ISThsp3

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 2455 bp

Ends


IR Length : 18/24

IRL : GTAAGCGTTTGCCGAACCCATCTTTTCAATGAGTCTGAGCTGAGCGAAGC
IRR : GTAAGCGTGCAGGGAACCCCTCTTGACACCCGAAGTGAAGGTCAGGTGCT

Insertion site


Left flankDirect repeatRight flankDR Length
TCGACGTTTGGAAATACCCTCTGGCCGA8

DNA sequence

GTAAGCGTTTGCCGAACCCATCTTTTCAATGAGTCTGAGCTGAGCGAAGCTTGGGTTTTTTCGGGGGCTCCATGCGATCAGACAAACTCAGTGAAGAGCG
GATTGATGAGATTCTGGCGATCCTCGATGAACTCAAAGCCAGCGGGATGAAGGCCGAAGCGTTTGCGCAAAGCAAGGGGCTGGGCTACGGGCAACTGCGC
GGCTGGCTGTCGAGCGCGCCGCGCTGGCGCGCCCAACGCGCGGGTCTGGCCCTGCCGCCTCGGCGCAGCGCCTTCGTGCGCGCCCACTGCAACCCGTCCC
CCGCTGCGGCTGCGGAGGGAAGCCCCCATCCCGGACACGCCCGCATCACCTGCGAGGGGGCCCAGCGCCGCGCCCAGATTGACTGGCCCGTGGCCCACGC
AGCCGAGTGCGCGCAGTGGCTGCAGGCCTGGCTGGGATAAGCCATGCTGCGCATTGAGGCCATCTGGCTGGCCGTGGGCGCCAGCGATCTGCGCGGCGGC
ATGGATAGCCTGCTGGGCCAGGTTGTGGCCCGGTTTGGCTCGGCCCAGCGCCACCATGCCTACGTGTTTGCCAACCGCCGCGCCACCCGGCTGAAGGTGC
TCGTCTTTGATGGCTCGGGGATCTGGCTGTGCACGCGCCGACTGCAAGAAGGCCGGTTTGCCTGGCCGCAGGAGGACCGTGAGGCGCTGCACCTGAGTGC
CGAGCAATGGAGTTGGCTGGCCGCCGGGCTGCCGTGGCAGCGCATGACCGCGCACGCCACCGCCAGCGCCATTGCCGTGGTGTAGTCCCCCGGACGTTTG
TCGATCGGGGCAACTCCCGATTCTCGCGCGCGCGTGCGCGCGAGAGAATTCGGCATGGTCAGCGCCATCGACGACGACAAACTCCAGTCCCTGGGCGACG
ATCCGGCGGCGCAGTACGCGCGCACGGTCATTGCGCAGTTCGGTGCACAGATCGCGCACCAGCGTGCCGAGCTCAAATTTCAATCGACCAAGATTGCGGC
CCTGAGCTTCGAGCTGGCGCGCCTCAAGCAATGGCGCTTCGGCCAGTCCAGCGAGAGCCTGGACACGCAAGGCCAGCTCTTCGACGCCAAGACGCAGGCG
CTGCTGCAAGCCGAGGAACAGGCCGAGGACCGCGCCGCCGATGCGGAGCGCACCGCCCCAGGCAAACGTCGCCCCAAACGCCAGCCCCTGCCCAGCCAGT
TGCCGCGCATCGAGCATCGCTACGAGATCGACTCCGGCCTGTGCCCGCAGGGCCACACCCTGCGCCGTATCGGGGAGGAGATCAGCGAGCAACTCGACTG
CGAGCCCACGCGTTTCTTCGTGCACCGGCACATCCGCGGCAAGTATGCCTGCGCCTGCTGCCAGACGGTGTTGGCTGCACCCCTGCCAGCGCAACTCATT
GACAAAGGCATTCCCGCCCCCGGCCTGCTGGCGCAGGTGGTGCTGGCCAAGCACGACGATCACCTGCCGCTGTACCGCCAGGAGGAGATTTACCGCCGCA
GCGGCGTGCACCTCCCGCGCTCGAGCCTGGCGCAGTGGGTGGGCCTGTGCGGGGTGCGCCTGGAACCGCTGGCCCAGGCCCTCAAAGACCATCTGCTGGA
GCAACCCGTGCTGCATGCCGATGAGACCCCGGTAGCCGAGCTGGCGCCGGGCACGGGCAAGACACACCGCGCTTATGTCTGGGTCTACCGCAGCGCGGCT
ACGCCGGCGGTGGTGTTTGACTATTGCGCCAGTCGTGCCGGTGCGCATGCGCGCGACTTCCTGCAGGATTGGTCAGGCACCTTGCTCACCGATGACTTCA
GCGGCTACAAGGCGCTGTATGCCCAGGGGAGCATTGTGGAGGCGGGGTGCTGGGCGCATGTACGCAGAAAGTTCTTCGAGGCGCACAAGCTGGCGGGCAG
CGCCATCGCGCAGGAGGCGCTTGAGCGCATCAAAGCCTTGTATGCCATTGAGCAGACCCTTCGGGAGCATCCGCCCGATGCGCGCACCGCGCTGCGCCAG
CGCCAAAGCCAACCCCTGCTCGAGGCCTTGCACGCCTGGCTGATCGAGCAACGCCCGCTTCTGGCCAAGGCCGACGCCACGGCGCGGGCCATCGACTATG
CGCTGGGCCGCTGGCGGGCGTTGTGTGTGTTTGCCACCGATGGGCGCGTGCCGATCGATAACAACGCGGTGGAAAACGCCATTCGGCCTCTCGCACTCGG
GCGCCGAAACTGGCTCTTCGTGGGCTCGCCCCAGGCCGGCCGCCGAGCCGCCGTGCTCATGACGCTGATCGAATCGGCCAAGCTCTGCGAGGTCGACCCC
TGGGCCTATCTCAAGGACGTGCTGACGAAGCTGCCCACCTGGCCCAACAGCCGTCTGGGCGAATTGCTGCCCCACAACTGGGCGAAAACCAATCCCCCTG
CACTCAGCACCTGACCTTCACTTCGGGTGTCAAGAGGGGTTCCCTGCACGCTTAC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
369 bp122 aa72440+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

MRSDKLSEERIDEILAILDELKASGMKAEAFAQSKGLGYGQLRGWLSSAPRWRAQRAGLALPPRRSAFVRAHCNPSPAAAAEGSPHPGHARITCEGAQRR
AQIDWPVAHAAECAQWLQAWLG

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
342 bp113 aa444785+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

MLRIEAIWLAVGASDLRGGMDSLLGQVVARFGSAQRHHAYVFANRRATRLKVLVFDGSGIWLCTRRLQEGRFAWPQEDREALHLSAEQWSWLAAGLPWQR
MTAHATASAIAVV

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1560 bp519 aa8552414+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVSAIDDDKLQSLGDDPAAQYARTVIAQFGAQIAHQRAELKFQSTKIAALSFELARLKQWRFGQSSESLDTQGQLFDAKTQALLQAEEQAEDRAADAERT
APGKRRPKRQPLPSQLPRIEHRYEIDSGLCPQGHTLRRIGEEISEQLDCEPTRFFVHRHIRGKYACACCQTVLAAPLPAQLIDKGIPAPGLLAQVVLAKH
DDHLPLYRQEEIYRRSGVHLPRSSLAQWVGLCGVRLEPLAQALKDHLLEQPVLHADETPVAELAPGTGKTHRAYVWVYRSAATPAVVFDYCASRAGAHAR
DFLQDWSGTLLTDDFSGYKALYAQGSIVEAGCWAHVRRKFFEAHKLAGSAIAQEALERIKALYAIEQTLREHPPDARTALRQRQSQPLLEALHAWLIEQR
PLLAKADATARAIDYALGRWRALCVFATDGRVPIDNNAVENAIRPLALGRRNWLFVGSPQAGRRAAVLMTLIESAKLCEVDPWAYLKDVLTKLPTWPNSR
LGELLPHNWAKTNPPALST

 

Blast result :
Comments
ISThsp3 is 30% (ORF1) and 54% (ORF2) aa similar to ISBcen19, 50% (ORF3) to ISBcen14.
References