ISVer1

  • Family IS1595
  • Group ISNwi1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABOX01000007 ND Bacterium Ellin514
Bacterium Ellin514
DNA section
IS Length : 2783 bp

Ends


IR Length : 22/25

IRL : CGGAATTATATACTTTACAAACACAACCAAACTGTTAGTCTCACTCCATG
IRR : CGGACTTATATACTTTCCAAACGCAGATTTTTTAAGTAAGGATAGTGAGA

Insertion site


Left flankDirect repeatRight flankDR Length
GGGGTCAGCTCTCGCTGGTGAGCTTGTCCCCAGTACTGG8

DNA sequence

CGGAATTATATACTTTACAAACACAACCAAACTGTTAGTCTCACTCCATGACAGAGAAGGAACTGAAACCCGAAGAGCTAAATCTAGTAACGCTGGCCGC
CCAATATTCCGATGAGGACAAGGCGCGTGGATTACTTGAACAAATGCGCTGGCCTGATGGCCCGATCTGTCCACATTGTAAGCACAACGAGGTTTACATC
ATCACTCCAAAGGCAACCAGCAAGTCGCCAGCTCGCAAAGGTCTGTATTGCTGTGCTGCTTGTCGCAAACAATTTACGGTAAAGGTCGGCACCATCTTTG
AAGGCAGTCATATTCCCATTTCCAAATGGCTCATGGCTCTGTTCATCATGTGCTCAAGCAAGAAGTCGATTAGCTCTCACCAATTGCACCGGATGTTGGG
CATCACGTACAAAACCGCGTGGTTCATGACTCATCGCATCCGTTATGCAATGGGTGGAGATAGCACCAAGAAGCTTTCCGGCATTGTCGAAGTAGATGAA
ACATTCGTTGGCGGCAAAGGTTCACGTGATACCACACTGGCGCGTAAAACGCCCGTGGTTGCACTGATTGAACGTGATGGCAATATGCGTACGGCAGTTG
TGTCCAACGTCACCCAGAAGAATCTAGGCAGGGTGTTGAATGAATCAGTGAGCAAGAATGCGATTGTGAACACCGACGAACACGGCGCTTATCGTAATCC
CTTGAAGGAATTCAAACAGCACAACACCGTTGTCCATTCCAAATACGAATACAGCCGCAAGCTGGATGATGGAACGAAAGCGGGAATCAATACTTGCGAA
TCCTTTTTCAGCCTGCTTAAGCGTGGCGTTTATGGTAGCTGGCACCATGTGAGCCGTGAGCATCTGCCAAAGTATGCGGGTGAATTTGAATTTCGCTGGA
ACAATCGCAAGGTAACAGACGGCGAGCGCATGGTTGCAGCCGTTGGCCGGATTGAAGGCAAACGGCTGACCTATCGCCAAGCGATCTGAATGGGGCGCAG
GGTTAAGTTTCTGTTTCTCGTCGAAAGGTTTCAGGTTATTGTAAACCGTCAACTACGATGGAAACGCTACTATGCCAAAACCGAAAAATTCCAAGCCGTC
CAAAAAGCCTATGACGCGTTCGGCGTCGAAGCCGAAAGCTGAATCGCTTAATCTGTCTGGGGTGAAGTTTGAGGATGCTTTGCGTGTGATGCTGGCAGCA
CCACCACCGCCAAGTTCTAAGAAAGCCAAGCAGGGAGTCAAATAGCCTTTTCTTCAAGGTTTGTTCTACTCTAAAAATGTCCGCAATGGATAAGTGTTCT
TTGTTGGCTTAGTTTCTTAAGCATACTAAGCTTCTTTTGGGTTAAAACCCCATTGAACGCGACATTAATTTTTGACAAAAAGAGGATTGCATGAACAAAA
CCGTTACCTATACTCATTCTATGAGAATAACCCCCCCCGCTTTTAACGGCGATAGGGTGAAGGCGGAAAACCTTATCATCTACGTTTGCCAAAAGATGGA
GAATTGCCCTGGATTTGGGGCGATCCTTCTAAACAAAGTCCTGTACTATATCGACCATGTTCATTATCTGAAACATGGTAAGAAGCTTACCGGATTCAAA
TATATTAAACAGCGGCTTGGCCCAACGCCAAAGCCATCGGAATTCTTGCCCATTCGGGAGAGCTTGATTGACAATGAAAAGATTAACGAAAAGCCAGTAG
AGTTTTTTGGCAGGGTCCAGAAACGGCTTTCTGCGCTAACAGAGCCAGACCTTAAAGGGTTCACTGTGGATGAAATCTCATTGATTGATAATGTTATTTC
CGCCCTTTCTCCATTCAACGGCAAAGCCATAAGCGACGTAACCCATGAGGAGCTATCATGGAAATTTGCGGGAATGATGGAAGAGCTTCCCGACTATGCT
TATCTGCTTACAGAAGCCCCTCTTAACGAAGATGACCTAACTTGGGCGCGCAAAACAATCACCGAATATGCAGGTAACGTTCGTTAGAGAAAATCAATTT
GATGACGCAATAGAACGCATATCTCAAACTCATAGCAGAATGGATGAGTTAGATATGGCAATTGAATGGGGACTTTCAAGAAACCCAAAGCATTTTTACA
ACATTTCCAAAGATTTTTATGTTTGGAAAACTGAAAGGCTTGTGGCTGGCATCCCTCAGTTAATTATTGTTTACCGGTTCGTGGAAATAATTAACCAAAT
TATTCTCATTTCCGTTTCGGAAATTCCCGATTCAGCATCTGAAGAAGAATAAAGGCTGAACACATTCATAAATCTCCCCGCCAGATAATTCTGGTGGGGT
TTTTATTTCTGGCAATTCTAATTGCAAATGATTTGCAATACGGTAAAGAAATCATCATGCATTATACCGGATCACATTCTACTTTGGTGGCTCGTCTTTT
TTGGGGGGCTGCTCTGAAGGAAAATACCACTTATCTTGGCCAGCATCTGGAAGCTTTGAGCGCATATCAATCTCGGCAGCTAAAGCGGGAAAAGAATTCT
CAAGCTCGGAAATGTGTTGATCGTAAGCAATCATTATAAGCCTCTCTACCGCCGCAGACTCCTTTTGCCTGTCTACTTTGGCGATTTCCGATATTCTTGA
AACCGTGTAGGTTTTAAGCCCCTCAATAACAGCTTTCTGCAAGTGAATCAGTTGCCTTAAATGTACAACCTCTGATTCCAGCCTTTTGAATTGTTCGTCG
TTCATAAGATAACACCCGCCTCGTCTTTAGTAATCTCACTATCCTTACTTAAAAAATCTGCGTTTGGAAAGTATATAAGTCCG
Protein section
ORF number : 5

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp313 aa48989+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTEKELKPEELNLVTLAAQYSDEDKARGLLEQMRWPDGPICPHCKHNEVYIITPKATSKSPARKGLYCCAACRKQFTVKVGTIFEGSHIPISKWLMALFI
MCSSKKSISSHQLHRMLGITYKTAWFMTHRIRYAMGGDSTKKLSGIVEVDETFVGGKGSRDTTLARKTPVVALIERDGNMRTAVVSNVTQKNLGRVLNES
VSKNAIVNTDEHGAYRNPLKEFKQHNTVVHSKYEYSRKLDDGTKAGINTCESFFSLLKRGVYGSWHHVSREHLPKYAGEFEFRWNNRKVTDGERMVAAVG
RIEGKRLTYRQAI

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
153 bp50 aa9901142+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MGRRVKFLFLVERFQVIVNRQLRWKRYYAKTEKFQAVQKAYDAFGVEAES

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
597 bp198 aa13911987+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MNKTVTYTHSMRITPPAFNGDRVKAENLIIYVCQKMENCPGFGAILLNKVLYYIDHVHYLKHGKKLTGFKYIKQRLGPTPKPSEFLPIRESLIDNEKINE
KPVEFFGRVQKRLSALTEPDLKGFTVDEISLIDNVISALSPFNGKAISDVTHEELSWKFAGMMEELPDYAYLLTEAPLNEDDLTWARKTITEYAGNVR

 

Blast result :
ORF 4
LengthBeginEndStrandFusion ORF
213 bp70 aa20402252+No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MDELDMAIEWGLSRNPKHFYNISKDFYVWKTERLVAGIPQLIIVYRFVEIINQIILISVSEIPDSASEEE

 

Blast result :
ORF 5
LengthBeginEndStrandFusion ORF
327 bp108 aa23792705-No
ORF function : Passenger Gene
Annotation : Hypothetical proteinDescription :

ORF sequence :

MNDEQFKRLESEVVHLRQLIHLQKAVIEGLKTYTVSRISEIAKVDRQKESAAVERLIMIAYDQHISELENSFPALAAEIDMRSKLPDAGQDKWYFPSEQP
PKKDEPPK

 

Blast result :
Comments
The first ORF is the transposase, others are passengers genes annotated as hypothetical protein.
ISver1 is 59% aa similar to ISMesp1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Smidt,H. and Richardson,P.(2008) US DOE Joint Genome Institute Direct submission GenBank
2] ISfinder annotation (2008)