ISVer1
- Family IS1595
- Group ISNwi1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABOX01000007 | ND | Bacterium Ellin514 | Bacterium Ellin514 |
DNA section
IS Length : 2783 bp
Ends
IR Length : 22/25
IRL : CGGAATTATATACTTTACAAACACAACCAAACTGTTAGTCTCACTCCATG
IRR : CGGACTTATATACTTTCCAAACGCAGATTTTTTAAGTAAGGATAGTGAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGGTCAGCTCTCGCT | GGTGAGCT | TGTCCCCAGTACTGG | 8 |
DNA sequence
CGGAATTATATACTTTACAAACACAACCAAACTGTTAGTCTCACTCCATGACAGAGAAGGAACTGAAACCCGAAGAGCTAAATCTAGTAACGCTGGCCGC
CCAATATTCCGATGAGGACAAGGCGCGTGGATTACTTGAACAAATGCGCTGGCCTGATGGCCCGATCTGTCCACATTGTAAGCACAACGAGGTTTACATC
ATCACTCCAAAGGCAACCAGCAAGTCGCCAGCTCGCAAAGGTCTGTATTGCTGTGCTGCTTGTCGCAAACAATTTACGGTAAAGGTCGGCACCATCTTTG
AAGGCAGTCATATTCCCATTTCCAAATGGCTCATGGCTCTGTTCATCATGTGCTCAAGCAAGAAGTCGATTAGCTCTCACCAATTGCACCGGATGTTGGG
CATCACGTACAAAACCGCGTGGTTCATGACTCATCGCATCCGTTATGCAATGGGTGGAGATAGCACCAAGAAGCTTTCCGGCATTGTCGAAGTAGATGAA
ACATTCGTTGGCGGCAAAGGTTCACGTGATACCACACTGGCGCGTAAAACGCCCGTGGTTGCACTGATTGAACGTGATGGCAATATGCGTACGGCAGTTG
TGTCCAACGTCACCCAGAAGAATCTAGGCAGGGTGTTGAATGAATCAGTGAGCAAGAATGCGATTGTGAACACCGACGAACACGGCGCTTATCGTAATCC
CTTGAAGGAATTCAAACAGCACAACACCGTTGTCCATTCCAAATACGAATACAGCCGCAAGCTGGATGATGGAACGAAAGCGGGAATCAATACTTGCGAA
TCCTTTTTCAGCCTGCTTAAGCGTGGCGTTTATGGTAGCTGGCACCATGTGAGCCGTGAGCATCTGCCAAAGTATGCGGGTGAATTTGAATTTCGCTGGA
ACAATCGCAAGGTAACAGACGGCGAGCGCATGGTTGCAGCCGTTGGCCGGATTGAAGGCAAACGGCTGACCTATCGCCAAGCGATCTGAATGGGGCGCAG
GGTTAAGTTTCTGTTTCTCGTCGAAAGGTTTCAGGTTATTGTAAACCGTCAACTACGATGGAAACGCTACTATGCCAAAACCGAAAAATTCCAAGCCGTC
CAAAAAGCCTATGACGCGTTCGGCGTCGAAGCCGAAAGCTGAATCGCTTAATCTGTCTGGGGTGAAGTTTGAGGATGCTTTGCGTGTGATGCTGGCAGCA
CCACCACCGCCAAGTTCTAAGAAAGCCAAGCAGGGAGTCAAATAGCCTTTTCTTCAAGGTTTGTTCTACTCTAAAAATGTCCGCAATGGATAAGTGTTCT
TTGTTGGCTTAGTTTCTTAAGCATACTAAGCTTCTTTTGGGTTAAAACCCCATTGAACGCGACATTAATTTTTGACAAAAAGAGGATTGCATGAACAAAA
CCGTTACCTATACTCATTCTATGAGAATAACCCCCCCCGCTTTTAACGGCGATAGGGTGAAGGCGGAAAACCTTATCATCTACGTTTGCCAAAAGATGGA
GAATTGCCCTGGATTTGGGGCGATCCTTCTAAACAAAGTCCTGTACTATATCGACCATGTTCATTATCTGAAACATGGTAAGAAGCTTACCGGATTCAAA
TATATTAAACAGCGGCTTGGCCCAACGCCAAAGCCATCGGAATTCTTGCCCATTCGGGAGAGCTTGATTGACAATGAAAAGATTAACGAAAAGCCAGTAG
AGTTTTTTGGCAGGGTCCAGAAACGGCTTTCTGCGCTAACAGAGCCAGACCTTAAAGGGTTCACTGTGGATGAAATCTCATTGATTGATAATGTTATTTC
CGCCCTTTCTCCATTCAACGGCAAAGCCATAAGCGACGTAACCCATGAGGAGCTATCATGGAAATTTGCGGGAATGATGGAAGAGCTTCCCGACTATGCT
TATCTGCTTACAGAAGCCCCTCTTAACGAAGATGACCTAACTTGGGCGCGCAAAACAATCACCGAATATGCAGGTAACGTTCGTTAGAGAAAATCAATTT
GATGACGCAATAGAACGCATATCTCAAACTCATAGCAGAATGGATGAGTTAGATATGGCAATTGAATGGGGACTTTCAAGAAACCCAAAGCATTTTTACA
ACATTTCCAAAGATTTTTATGTTTGGAAAACTGAAAGGCTTGTGGCTGGCATCCCTCAGTTAATTATTGTTTACCGGTTCGTGGAAATAATTAACCAAAT
TATTCTCATTTCCGTTTCGGAAATTCCCGATTCAGCATCTGAAGAAGAATAAAGGCTGAACACATTCATAAATCTCCCCGCCAGATAATTCTGGTGGGGT
TTTTATTTCTGGCAATTCTAATTGCAAATGATTTGCAATACGGTAAAGAAATCATCATGCATTATACCGGATCACATTCTACTTTGGTGGCTCGTCTTTT
TTGGGGGGCTGCTCTGAAGGAAAATACCACTTATCTTGGCCAGCATCTGGAAGCTTTGAGCGCATATCAATCTCGGCAGCTAAAGCGGGAAAAGAATTCT
CAAGCTCGGAAATGTGTTGATCGTAAGCAATCATTATAAGCCTCTCTACCGCCGCAGACTCCTTTTGCCTGTCTACTTTGGCGATTTCCGATATTCTTGA
AACCGTGTAGGTTTTAAGCCCCTCAATAACAGCTTTCTGCAAGTGAATCAGTTGCCTTAAATGTACAACCTCTGATTCCAGCCTTTTGAATTGTTCGTCG
TTCATAAGATAACACCCGCCTCGTCTTTAGTAATCTCACTATCCTTACTTAAAAAATCTGCGTTTGGAAAGTATATAAGTCCG
CCAATATTCCGATGAGGACAAGGCGCGTGGATTACTTGAACAAATGCGCTGGCCTGATGGCCCGATCTGTCCACATTGTAAGCACAACGAGGTTTACATC
ATCACTCCAAAGGCAACCAGCAAGTCGCCAGCTCGCAAAGGTCTGTATTGCTGTGCTGCTTGTCGCAAACAATTTACGGTAAAGGTCGGCACCATCTTTG
AAGGCAGTCATATTCCCATTTCCAAATGGCTCATGGCTCTGTTCATCATGTGCTCAAGCAAGAAGTCGATTAGCTCTCACCAATTGCACCGGATGTTGGG
CATCACGTACAAAACCGCGTGGTTCATGACTCATCGCATCCGTTATGCAATGGGTGGAGATAGCACCAAGAAGCTTTCCGGCATTGTCGAAGTAGATGAA
ACATTCGTTGGCGGCAAAGGTTCACGTGATACCACACTGGCGCGTAAAACGCCCGTGGTTGCACTGATTGAACGTGATGGCAATATGCGTACGGCAGTTG
TGTCCAACGTCACCCAGAAGAATCTAGGCAGGGTGTTGAATGAATCAGTGAGCAAGAATGCGATTGTGAACACCGACGAACACGGCGCTTATCGTAATCC
CTTGAAGGAATTCAAACAGCACAACACCGTTGTCCATTCCAAATACGAATACAGCCGCAAGCTGGATGATGGAACGAAAGCGGGAATCAATACTTGCGAA
TCCTTTTTCAGCCTGCTTAAGCGTGGCGTTTATGGTAGCTGGCACCATGTGAGCCGTGAGCATCTGCCAAAGTATGCGGGTGAATTTGAATTTCGCTGGA
ACAATCGCAAGGTAACAGACGGCGAGCGCATGGTTGCAGCCGTTGGCCGGATTGAAGGCAAACGGCTGACCTATCGCCAAGCGATCTGAATGGGGCGCAG
GGTTAAGTTTCTGTTTCTCGTCGAAAGGTTTCAGGTTATTGTAAACCGTCAACTACGATGGAAACGCTACTATGCCAAAACCGAAAAATTCCAAGCCGTC
CAAAAAGCCTATGACGCGTTCGGCGTCGAAGCCGAAAGCTGAATCGCTTAATCTGTCTGGGGTGAAGTTTGAGGATGCTTTGCGTGTGATGCTGGCAGCA
CCACCACCGCCAAGTTCTAAGAAAGCCAAGCAGGGAGTCAAATAGCCTTTTCTTCAAGGTTTGTTCTACTCTAAAAATGTCCGCAATGGATAAGTGTTCT
TTGTTGGCTTAGTTTCTTAAGCATACTAAGCTTCTTTTGGGTTAAAACCCCATTGAACGCGACATTAATTTTTGACAAAAAGAGGATTGCATGAACAAAA
CCGTTACCTATACTCATTCTATGAGAATAACCCCCCCCGCTTTTAACGGCGATAGGGTGAAGGCGGAAAACCTTATCATCTACGTTTGCCAAAAGATGGA
GAATTGCCCTGGATTTGGGGCGATCCTTCTAAACAAAGTCCTGTACTATATCGACCATGTTCATTATCTGAAACATGGTAAGAAGCTTACCGGATTCAAA
TATATTAAACAGCGGCTTGGCCCAACGCCAAAGCCATCGGAATTCTTGCCCATTCGGGAGAGCTTGATTGACAATGAAAAGATTAACGAAAAGCCAGTAG
AGTTTTTTGGCAGGGTCCAGAAACGGCTTTCTGCGCTAACAGAGCCAGACCTTAAAGGGTTCACTGTGGATGAAATCTCATTGATTGATAATGTTATTTC
CGCCCTTTCTCCATTCAACGGCAAAGCCATAAGCGACGTAACCCATGAGGAGCTATCATGGAAATTTGCGGGAATGATGGAAGAGCTTCCCGACTATGCT
TATCTGCTTACAGAAGCCCCTCTTAACGAAGATGACCTAACTTGGGCGCGCAAAACAATCACCGAATATGCAGGTAACGTTCGTTAGAGAAAATCAATTT
GATGACGCAATAGAACGCATATCTCAAACTCATAGCAGAATGGATGAGTTAGATATGGCAATTGAATGGGGACTTTCAAGAAACCCAAAGCATTTTTACA
ACATTTCCAAAGATTTTTATGTTTGGAAAACTGAAAGGCTTGTGGCTGGCATCCCTCAGTTAATTATTGTTTACCGGTTCGTGGAAATAATTAACCAAAT
TATTCTCATTTCCGTTTCGGAAATTCCCGATTCAGCATCTGAAGAAGAATAAAGGCTGAACACATTCATAAATCTCCCCGCCAGATAATTCTGGTGGGGT
TTTTATTTCTGGCAATTCTAATTGCAAATGATTTGCAATACGGTAAAGAAATCATCATGCATTATACCGGATCACATTCTACTTTGGTGGCTCGTCTTTT
TTGGGGGGCTGCTCTGAAGGAAAATACCACTTATCTTGGCCAGCATCTGGAAGCTTTGAGCGCATATCAATCTCGGCAGCTAAAGCGGGAAAAGAATTCT
CAAGCTCGGAAATGTGTTGATCGTAAGCAATCATTATAAGCCTCTCTACCGCCGCAGACTCCTTTTGCCTGTCTACTTTGGCGATTTCCGATATTCTTGA
AACCGTGTAGGTTTTAAGCCCCTCAATAACAGCTTTCTGCAAGTGAATCAGTTGCCTTAAATGTACAACCTCTGATTCCAGCCTTTTGAATTGTTCGTCG
TTCATAAGATAACACCCGCCTCGTCTTTAGTAATCTCACTATCCTTACTTAAAAAATCTGCGTTTGGAAAGTATATAAGTCCG
Protein section
ORF number : 5
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 313 aa | 48 | 989 | + | No |
Chemistry : DDE
ORF sequence :
MTEKELKPEELNLVTLAAQYSDEDKARGLLEQMRWPDGPICPHCKHNEVYIITPKATSKSPARKGLYCCAACRKQFTVKVGTIFEGSHIPISKWLMALFI
MCSSKKSISSHQLHRMLGITYKTAWFMTHRIRYAMGGDSTKKLSGIVEVDETFVGGKGSRDTTLARKTPVVALIERDGNMRTAVVSNVTQKNLGRVLNES
VSKNAIVNTDEHGAYRNPLKEFKQHNTVVHSKYEYSRKLDDGTKAGINTCESFFSLLKRGVYGSWHHVSREHLPKYAGEFEFRWNNRKVTDGERMVAAVG
RIEGKRLTYRQAI
MCSSKKSISSHQLHRMLGITYKTAWFMTHRIRYAMGGDSTKKLSGIVEVDETFVGGKGSRDTTLARKTPVVALIERDGNMRTAVVSNVTQKNLGRVLNES
VSKNAIVNTDEHGAYRNPLKEFKQHNTVVHSKYEYSRKLDDGTKAGINTCESFFSLLKRGVYGSWHHVSREHLPKYAGEFEFRWNNRKVTDGERMVAAVG
RIEGKRLTYRQAI
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
153 bp | 50 aa | 990 | 1142 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MGRRVKFLFLVERFQVIVNRQLRWKRYYAKTEKFQAVQKAYDAFGVEAES
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
597 bp | 198 aa | 1391 | 1987 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MNKTVTYTHSMRITPPAFNGDRVKAENLIIYVCQKMENCPGFGAILLNKVLYYIDHVHYLKHGKKLTGFKYIKQRLGPTPKPSEFLPIRESLIDNEKINE
KPVEFFGRVQKRLSALTEPDLKGFTVDEISLIDNVISALSPFNGKAISDVTHEELSWKFAGMMEELPDYAYLLTEAPLNEDDLTWARKTITEYAGNVR
KPVEFFGRVQKRLSALTEPDLKGFTVDEISLIDNVISALSPFNGKAISDVTHEELSWKFAGMMEELPDYAYLLTEAPLNEDDLTWARKTITEYAGNVR
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
213 bp | 70 aa | 2040 | 2252 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MDELDMAIEWGLSRNPKHFYNISKDFYVWKTERLVAGIPQLIIVYRFVEIINQIILISVSEIPDSASEEE
Blast result :ORF 5
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
327 bp | 108 aa | 2379 | 2705 | - | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
MNDEQFKRLESEVVHLRQLIHLQKAVIEGLKTYTVSRISEIAKVDRQKESAAVERLIMIAYDQHISELENSFPALAAEIDMRSKLPDAGQDKWYFPSEQP
PKKDEPPK
PKKDEPPK
Blast result :
Comments
The first ORF is the transposase, others are passengers genes annotated as hypothetical protein.
ISver1 is 59% aa similar to ISMesp1.
ISver1 is 59% aa similar to ISMesp1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Smidt,H. and Richardson,P.(2008) US DOE Joint Genome Institute Direct submission GenBank
2] ISfinder annotation (2008)
2] ISfinder annotation (2008)