ISShes14
- Family IS3
- Group IS51
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008577 | ND | Shewanella sp. | Shewanella sp. ANA-3 |
DNA section
IS Length : 1235 bp
Ends
IR Length : 22/28
IRL : TGAATCGCCACCGATTTCCTAGACACCTCTTTTGGGTTAGTTAGATAAAC
IRR : TGAATCGCCACTATTTCACTAGACAACTTTGAGCCTCATTAAAATACTGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| AGATAAAATA | GGCTCCCTTA | 0 |
DNA sequence
TGAATCGCCACCGATTTCCTAGACACCTCTTTTGGGTTAGTTAGATAAACTAACCCAAAAGAGGTGTCTAGGAACCACAAACATTATTCCGAAGAATTTA
AAATCGAAGCTGTTAAGCAAGTTACCATTGCTGGCCATTCTGTTGCTGATGTTGCTCAGCGTTTAGGAACAACCACCCACAGTCTTTATGCCTGGATTAA
ACGCTACGGCCCCGATTCATCAGAACATTTGCAAAAGTCTGAAGAGTCAGCCGAGATTCGACTGCTACAGAAAGAGCTCAAGCGTGTCACTGAAGAACGT
GACTTGTAAAAAAAAGCCGCGGCGTACTTCGCAAGCCACCCCGAGTAAGATACGCCTTTATTCAAGAGCATCACCACAGCCATTCAGTGCGACAACTTTG
TCAGCTGTTTGATGTTCATCCGAGCGGGTATTACGCATGGAGACTCAGCCCTAAATCAAAGCGGCAGAAGGATAATGAACGGGTTACTAGGCAGCTTAAG
CAGAGTTGGCTCGAATCTGGTGGAGTTTATGAATATCGTAAAATCCACCGTGATATGCGGGATATTGGCGAGCAATGCGGGATTAATCGAGTACATCGGC
TCATGCAACGAGCAGGACTCAGAGCGCAGGTTGGATATCGAAAACCTCGTGCTCGTGGCGGAGAACAGCATGTAGTGACTCCAAATCGTTTAGAGCGGCA
ATTTAATCCATCGGCCCCAATATGGCTTGGGTAACGGATATTACCTACATCAAAACTCATGAAGGTTGGTTATATCTGGGTGCTGTGATGGACTTATTTT
CTCGTCGTATTATTGGGTGGTCGATGGGCAGCAGAATAACCAAAGAACTGGCATTAGACGCGCTTTTAATGGCTGTATGGCGCCGTAAGCCTACAGGTAA
AGTGTTAGTCCATTCAGATCAGGGAAGCCAATATACTAGCCATGACTGGAGTGAATTTCTGACCGCACATGGATTGGAAGGCAGCATGAGTCGACGTGGT
AGTTGCCATGATAATGCAGTGGCTGAGAGTTTCTTTCAGCTATTAAAGCGTGAGCGGATCAAGCGGAAAATCTATTCGACAAGAGAAGCGGCTAAAAGTG
ATATTTTTAATTATATCGATATGTTTTATAACCCTAAACGGCAGCATAGTTCCAATCATGGCTTATCACCGTTAGAGTATGAACGTCAGTATTTTAATGA
GGCTCAAAGTTGTCTAGTGAAATAGTGGCGATTCA
AAATCGAAGCTGTTAAGCAAGTTACCATTGCTGGCCATTCTGTTGCTGATGTTGCTCAGCGTTTAGGAACAACCACCCACAGTCTTTATGCCTGGATTAA
ACGCTACGGCCCCGATTCATCAGAACATTTGCAAAAGTCTGAAGAGTCAGCCGAGATTCGACTGCTACAGAAAGAGCTCAAGCGTGTCACTGAAGAACGT
GACTTGTAAAAAAAAGCCGCGGCGTACTTCGCAAGCCACCCCGAGTAAGATACGCCTTTATTCAAGAGCATCACCACAGCCATTCAGTGCGACAACTTTG
TCAGCTGTTTGATGTTCATCCGAGCGGGTATTACGCATGGAGACTCAGCCCTAAATCAAAGCGGCAGAAGGATAATGAACGGGTTACTAGGCAGCTTAAG
CAGAGTTGGCTCGAATCTGGTGGAGTTTATGAATATCGTAAAATCCACCGTGATATGCGGGATATTGGCGAGCAATGCGGGATTAATCGAGTACATCGGC
TCATGCAACGAGCAGGACTCAGAGCGCAGGTTGGATATCGAAAACCTCGTGCTCGTGGCGGAGAACAGCATGTAGTGACTCCAAATCGTTTAGAGCGGCA
ATTTAATCCATCGGCCCCAATATGGCTTGGGTAACGGATATTACCTACATCAAAACTCATGAAGGTTGGTTATATCTGGGTGCTGTGATGGACTTATTTT
CTCGTCGTATTATTGGGTGGTCGATGGGCAGCAGAATAACCAAAGAACTGGCATTAGACGCGCTTTTAATGGCTGTATGGCGCCGTAAGCCTACAGGTAA
AGTGTTAGTCCATTCAGATCAGGGAAGCCAATATACTAGCCATGACTGGAGTGAATTTCTGACCGCACATGGATTGGAAGGCAGCATGAGTCGACGTGGT
AGTTGCCATGATAATGCAGTGGCTGAGAGTTTCTTTCAGCTATTAAAGCGTGAGCGGATCAAGCGGAAAATCTATTCGACAAGAGAAGCGGCTAAAAGTG
ATATTTTTAATTATATCGATATGTTTTATAACCCTAAACGGCAGCATAGTTCCAATCATGGCTTATCACCGTTAGAGTATGAACGTCAGTATTTTAATGA
GGCTCAAAGTTGTCTAGTGAAATAGTGGCGATTCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1162 bp | 387 aa | 64 | 1225 | + | Yes |
Chemistry : DDE
ORF sequence :
Blast result :
Comments
There is one copy of ISShes14 in the Shewanella sp. ANA-3 chromosome.
The transposase that it encodes is degenerate, requiring read-through of one in-frame stop codon and a frameshift (in addition to the predicted programmed frameshift) to produce the protein shown here.
The repaired sequence of the ISShes14 transposase has 88% identity to ISSham2_aa3.
The transposase that it encodes is degenerate, requiring read-through of one in-frame stop codon and a frameshift (in addition to the predicted programmed frameshift) to produce the protein shown here.
The repaired sequence of the ISShes14 transposase has 88% identity to ISSham2_aa3.
References
1] Romine, M. F. (2008) Direct submission.