ISGebe1

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAZA01000004 ND Geobacter bemidjiensis
Geobacter bemidjiensis Bem
DNA section
IS Length : 1269 bp

Ends


IR Length : 42/50

IRL : TGTATAGACTGGGGACATGGTTTACAAATGTTCGGGGACATAGTTAACAC
IRR : TGTATGGACCGGGGTCAAGGTTTACAGTTGTTCGGGGACATGGTTTACAC

Insertion site


Left flankDirect repeatRight flankDR Length
CTAGCCCCCTCCCGCCAAGGGGAGGG6

DNA sequence

TGTATAGACTGGGGACATGGTTTACAAATGTTCGGGGACATAGTTAACACTTTTGCCAAGAATGACCTTTCCTCGGAGGAGGGAGACCATGCCTTGGCGA
CCGGTGGATACTATGACCCTGAGATTCGAGTTCGTTCATTTGGCGTTGCAGGAAGGCAGCAACATAGCCTTCCTTTGCAAACGCTTTAACATCAGCCGTC
CGACCGGCTACAAATGGATTAGCAGGTTCCTTGAAACCGGCGTCGAAGGCCTAATTGACTTATCTCGCAAGCCACTGACCTGTCCACATAAGACGGTCAC
TGCGACCGAAGATGCTATTCTCAAGCTTCGCGAAGAACATCAGGCTTGGGGAGCACGTAAGCTACGTAAGCGTCTTGAAAAACTTGGGCATCAGGGGGTG
CCTGTACCTTCGACCATAACAGCAATCTTGCGCCGCAACGGCTGCATTGATCCAGCTGAGTCAGATAAACATACTGCTTTCCAACGGTTCGAGCACCCAT
ACCCAAACGACCTATGGCAGATGGATTTCAAGGGCAGTATTCCGATGAAGCATCATGGTCGCTGTCATCCGTTGACTGTTCTGGATGACCATTCCCGGTT
TAGTGTGGTGCTTGTAGCCTGTGCCAATGAGCGAACAGAAACGGTTAAAGCTGCTTTGATTGAGGCATTCAGGCAATATGGATTGCCATATCGAATGACC
ATGGACAATGGCAGCCCATGGGGTAACGATCAATACAACGACCTTACGCCATTAACGGTCTGGCTTATCAGAAACGAGATACGGGTCAGCCACTCTCGCC
CCTATCATCCTCAAACACAGGGTAAGGACGAGCGGTTTCACAGAACTCTGGTTGCAGAAGCAATCGCTGGAAGAGTCTTCGAAGACCTAGCTGACTGCCA
GCTTAGATTCGACACCTTCAGGCATTGCTACAACTTGGAGCGCCCACACGAATCACTAGGTATGGAAACTCCGATGACGCGTTATAAGCCTAGCCGGCGG
ACTTACTCAGAAATACTGCCCGAGATTCAGTACGCCCCAGACGACGAGATCCGAAAGGTCCAGGCCGAGGGTAAGGTGTCATTCAAAGGCCGATGTGTGC
GCCTCGCGAAGGCGCTCAGGGGGCAGCCGGTGGCATTTCGGCCAACCATACGCGATGGCGAATATGGCGTTTATTTCTGCAGCCAGAAAATCGCAGAAGT
CGATCTCAAAGAACAAAAAGTGTAAACCATGTCCCCGAACAACTGTAAACCTTGACCCCGGTCCATACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1137 bp378 aa891225+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPWRPVDTMTLRFEFVHLALQEGSNIAFLCKRFNISRPTGYKWISRFLETGVEGLIDLSRKPLTCPHKTVTATEDAILKLREEHQAWGARKLRKRLEKLG
HQGVPVPSTITAILRRNGCIDPAESDKHTAFQRFEHPYPNDLWQMDFKGSIPMKHHGRCHPLTVLDDHSRFSVVLVACANERTETVKAALIEAFRQYGLP
YRMTMDNGSPWGNDQYNDLTPLTVWLIRNEIRVSHSRPYHPQTQGKDERFHRTLVAEAIAGRVFEDLADCQLRFDTFRHCYNLERPHESLGMETPMTRYK
PSRRTYSEILPEIQYAPDDEIRKVQAEGKVSFKGRCVRLAKALRGQPVAFRPTIRDGEYGVYFCSQKIAEVDLKEQKV

 

Blast result :
Comments
ISGebe1 is 66% aa similar to ISAzvi11.
References
1]Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Lovley,D. and Richardson,P.(2007) Direct Submission GenBank.