ISGebe1
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAZA01000004 | ND | Geobacter bemidjiensis | Geobacter bemidjiensis Bem |
DNA section
IS Length : 1269 bp
Ends
IR Length : 42/50
IRL : TGTATAGACTGGGGACATGGTTTACAAATGTTCGGGGACATAGTTAACAC
IRR : TGTATGGACCGGGGTCAAGGTTTACAGTTGTTCGGGGACATGGTTTACAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTAGCCCCCT | CCCGCC | AAGGGGAGGG | 6 |
DNA sequence
TGTATAGACTGGGGACATGGTTTACAAATGTTCGGGGACATAGTTAACACTTTTGCCAAGAATGACCTTTCCTCGGAGGAGGGAGACCATGCCTTGGCGA
CCGGTGGATACTATGACCCTGAGATTCGAGTTCGTTCATTTGGCGTTGCAGGAAGGCAGCAACATAGCCTTCCTTTGCAAACGCTTTAACATCAGCCGTC
CGACCGGCTACAAATGGATTAGCAGGTTCCTTGAAACCGGCGTCGAAGGCCTAATTGACTTATCTCGCAAGCCACTGACCTGTCCACATAAGACGGTCAC
TGCGACCGAAGATGCTATTCTCAAGCTTCGCGAAGAACATCAGGCTTGGGGAGCACGTAAGCTACGTAAGCGTCTTGAAAAACTTGGGCATCAGGGGGTG
CCTGTACCTTCGACCATAACAGCAATCTTGCGCCGCAACGGCTGCATTGATCCAGCTGAGTCAGATAAACATACTGCTTTCCAACGGTTCGAGCACCCAT
ACCCAAACGACCTATGGCAGATGGATTTCAAGGGCAGTATTCCGATGAAGCATCATGGTCGCTGTCATCCGTTGACTGTTCTGGATGACCATTCCCGGTT
TAGTGTGGTGCTTGTAGCCTGTGCCAATGAGCGAACAGAAACGGTTAAAGCTGCTTTGATTGAGGCATTCAGGCAATATGGATTGCCATATCGAATGACC
ATGGACAATGGCAGCCCATGGGGTAACGATCAATACAACGACCTTACGCCATTAACGGTCTGGCTTATCAGAAACGAGATACGGGTCAGCCACTCTCGCC
CCTATCATCCTCAAACACAGGGTAAGGACGAGCGGTTTCACAGAACTCTGGTTGCAGAAGCAATCGCTGGAAGAGTCTTCGAAGACCTAGCTGACTGCCA
GCTTAGATTCGACACCTTCAGGCATTGCTACAACTTGGAGCGCCCACACGAATCACTAGGTATGGAAACTCCGATGACGCGTTATAAGCCTAGCCGGCGG
ACTTACTCAGAAATACTGCCCGAGATTCAGTACGCCCCAGACGACGAGATCCGAAAGGTCCAGGCCGAGGGTAAGGTGTCATTCAAAGGCCGATGTGTGC
GCCTCGCGAAGGCGCTCAGGGGGCAGCCGGTGGCATTTCGGCCAACCATACGCGATGGCGAATATGGCGTTTATTTCTGCAGCCAGAAAATCGCAGAAGT
CGATCTCAAAGAACAAAAAGTGTAAACCATGTCCCCGAACAACTGTAAACCTTGACCCCGGTCCATACA
CCGGTGGATACTATGACCCTGAGATTCGAGTTCGTTCATTTGGCGTTGCAGGAAGGCAGCAACATAGCCTTCCTTTGCAAACGCTTTAACATCAGCCGTC
CGACCGGCTACAAATGGATTAGCAGGTTCCTTGAAACCGGCGTCGAAGGCCTAATTGACTTATCTCGCAAGCCACTGACCTGTCCACATAAGACGGTCAC
TGCGACCGAAGATGCTATTCTCAAGCTTCGCGAAGAACATCAGGCTTGGGGAGCACGTAAGCTACGTAAGCGTCTTGAAAAACTTGGGCATCAGGGGGTG
CCTGTACCTTCGACCATAACAGCAATCTTGCGCCGCAACGGCTGCATTGATCCAGCTGAGTCAGATAAACATACTGCTTTCCAACGGTTCGAGCACCCAT
ACCCAAACGACCTATGGCAGATGGATTTCAAGGGCAGTATTCCGATGAAGCATCATGGTCGCTGTCATCCGTTGACTGTTCTGGATGACCATTCCCGGTT
TAGTGTGGTGCTTGTAGCCTGTGCCAATGAGCGAACAGAAACGGTTAAAGCTGCTTTGATTGAGGCATTCAGGCAATATGGATTGCCATATCGAATGACC
ATGGACAATGGCAGCCCATGGGGTAACGATCAATACAACGACCTTACGCCATTAACGGTCTGGCTTATCAGAAACGAGATACGGGTCAGCCACTCTCGCC
CCTATCATCCTCAAACACAGGGTAAGGACGAGCGGTTTCACAGAACTCTGGTTGCAGAAGCAATCGCTGGAAGAGTCTTCGAAGACCTAGCTGACTGCCA
GCTTAGATTCGACACCTTCAGGCATTGCTACAACTTGGAGCGCCCACACGAATCACTAGGTATGGAAACTCCGATGACGCGTTATAAGCCTAGCCGGCGG
ACTTACTCAGAAATACTGCCCGAGATTCAGTACGCCCCAGACGACGAGATCCGAAAGGTCCAGGCCGAGGGTAAGGTGTCATTCAAAGGCCGATGTGTGC
GCCTCGCGAAGGCGCTCAGGGGGCAGCCGGTGGCATTTCGGCCAACCATACGCGATGGCGAATATGGCGTTTATTTCTGCAGCCAGAAAATCGCAGAAGT
CGATCTCAAAGAACAAAAAGTGTAAACCATGTCCCCGAACAACTGTAAACCTTGACCCCGGTCCATACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1137 bp | 378 aa | 89 | 1225 | + | No |
Chemistry : DDE
ORF sequence :
MPWRPVDTMTLRFEFVHLALQEGSNIAFLCKRFNISRPTGYKWISRFLETGVEGLIDLSRKPLTCPHKTVTATEDAILKLREEHQAWGARKLRKRLEKLG
HQGVPVPSTITAILRRNGCIDPAESDKHTAFQRFEHPYPNDLWQMDFKGSIPMKHHGRCHPLTVLDDHSRFSVVLVACANERTETVKAALIEAFRQYGLP
YRMTMDNGSPWGNDQYNDLTPLTVWLIRNEIRVSHSRPYHPQTQGKDERFHRTLVAEAIAGRVFEDLADCQLRFDTFRHCYNLERPHESLGMETPMTRYK
PSRRTYSEILPEIQYAPDDEIRKVQAEGKVSFKGRCVRLAKALRGQPVAFRPTIRDGEYGVYFCSQKIAEVDLKEQKV
HQGVPVPSTITAILRRNGCIDPAESDKHTAFQRFEHPYPNDLWQMDFKGSIPMKHHGRCHPLTVLDDHSRFSVVLVACANERTETVKAALIEAFRQYGLP
YRMTMDNGSPWGNDQYNDLTPLTVWLIRNEIRVSHSRPYHPQTQGKDERFHRTLVAEAIAGRVFEDLADCQLRFDTFRHCYNLERPHESLGMETPMTRYK
PSRRTYSEILPEIQYAPDDEIRKVQAEGKVSFKGRCVRLAKALRGQPVAFRPTIRDGEYGVYFCSQKIAEVDLKEQKV
Blast result :
Comments
ISGebe1 is 66% aa similar to ISAzvi11.
References
1]Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Lovley,D. and Richardson,P.(2007) Direct Submission GenBank.