ISPa29

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas aeruginosa
Pseudomonas aeruginosa
DNA section
IS Length : 1534 bp

Ends


IR Length : 12/13

IRL : gaatgaAAGGGACTTCCCCGTCCCAAGCGCAGCGCGTATTTGCGCAGAAC
IRR : ----tacAAGGGCTTCCCCACCTTTGCAAGCAATACCTCTCCCTGGGTTG

Insertion site


Left flankDirect repeatRight flankDR Length
TGCATCTAACGCTGAGTTAA0

DNA sequence

GAATGAAAGGGACTTCCCCGTCCCAAGCGCAGCGCGTATTTGCGCAGAACGGCATCAAAGTGCCACGATGGGAAGTGCAATCTCTCATCAACACGCTTGT
TTCATTGGAAGGGGAAGTCCATGACCATCGTAACCGTAGGAATCGACCTGGCAAAGAACGTCTTTGCCGTACACGGCGTGGATGCGGCAGGCAAGCCAGC
CCTCGTGCGCCCGAGCGTAGCGCGCAGCAACCTGCTGGAACTCATCGCCACCTTGCCCCCGTGCCTGATCGGCATGGAGGCATGCTCCGGCGCCCACCAC
TGGGCCCGGGAATTCGAGAAGCTCGGCCACACCGTGCGCCTGATGGCCCCCAAGTTCGTCGCCCCCTACCGCCTCTCGGGCAAACGCGGCAAGAACGACG
CGGCCGATGCCGCAGCGATCTGCGAAGCCGTCACCCGCCCCCAGATGCGTTTCGTGCCCCACAAGAGCATCGAGCAGCAAGGCCAGCTCATGGTGCACCG
CACACGCCAGGGATTCGTGGAACAACGCACCGCCACGCTCAACCGCATTCGGGGTCTGCTCTCGGAGCTGGGCATCGTGCTGCCCCTCAAAGCCGCCACC
GTGCGCCGTGAAGCGCTGGCACGCCTCGAAGAGCTGCCCGGCTGGGCCAACACTGTCATCGGCGATCTCTTGAGTGAAGTCACCCGGCTTGATGAACGCA
TCACCGAGTACGACCGCCACATCGCCCTCATGGCCCGCCACAGCACCCAGGCGCAGCAGTTGATGCAACTCGGCGGTATTGGCCAGACCACCGCCATGGC
ACTCATCAGCACCGTGGGCAATGGCCACGACTTCGCCTGCGGGCGCAGCTTCAGCGCCTGGCTGGGCTTGGTGCCCGGGCAATACAGCTCGGGCGGCAAG
CAGAGATTGGGACGCATCACCAAAGCCGGAGATGCCTACCTGCGCAGCCTGCTGGTGATGGGAGCCAGAGCGGTGCTTGCCGCTGCCATGAACACCCGCA
CGCCCAAGCAAGACCCCATCAGCCGCTGGGCCCGCAGCCTGGCCGAGCGCCGAGGCTACTGGCGCGCCGTGGTGGCCATTGCCGCCAAGAACGCCCGCAT
GTGCTGGGCCGTGCTGCAGCGCGGAGATGCCTTCAAGATGCCCGCGTGAGCTGGGCCGGCTACGCACACAGACACCAGACAAGCTGACAGATCAGAAATC
CGCCGCGTGAAGGCAGTCGTTGATGTGCAAAAGGCAAGGACCTGCGCCGGGGAATGCTCGGTTAACTCAAGGGGACCCATGGGAGCCATCCCAAAGCCCG
ACTAACGAATGGAGCCCCCGGCGCGCGTCTTTCATCAGGGTTTGCTGCCAACCAGAAGGCAGCGTAATGACCGTTTGTAGTCACGCCGTCCGCACCGTTT
GCCAAGAAGCATCGACGCGCTGCATGCACAAGGCTGGGAGCTGATCTGAAATTGACGAAAACCATGCCTGGGTTGATCGCTGTGCGATCAACCCAGGGAG
AGGTATTGCTTGCAAAGGTGGGGAAGCCCTTGTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa1211149+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MTIVTVGIDLAKNVFAVHGVDAAGKPALVRPSVARSNLLELIATLPPCLIGMEACSGAHHWAREFEKLGHTVRLMAPKFVAPYRLSGKRGKNDAADAAAI
CEAVTRPQMRFVPHKSIEQQGQLMVHRTRQGFVEQRTATLNRIRGLLSELGIVLPLKAATVRREALARLEELPGWANTVIGDLLSEVTRLDERITEYDRH
IALMARHSTQAQQLMQLGGIGQTTAMALISTVGNGHDFACGRSFSAWLGLVPGQYSSGGKQRLGRITKAGDAYLRSLLVMGARAVLAAAMNTRTPKQDPI
SRWARSLAERRGYWRAVVAIAAKNARMCWAVLQRGDAFKMPA

 

Blast result :
Comments
ISPa29 is 78% aa similare to IS1492.
References
1] Poirel, L. (2008) Direct submission.