ISPa29
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas aeruginosa | Pseudomonas aeruginosa |
DNA section
IS Length : 1534 bp
Ends
IR Length : 12/13
IRL : gaatgaAAGGGACTTCCCCGTCCCAAGCGCAGCGCGTATTTGCGCAGAAC
IRR : ----tacAAGGGCTTCCCCACCTTTGCAAGCAATACCTCTCCCTGGGTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCATCTAAC | GCTGAGTTAA | 0 |
DNA sequence
GAATGAAAGGGACTTCCCCGTCCCAAGCGCAGCGCGTATTTGCGCAGAACGGCATCAAAGTGCCACGATGGGAAGTGCAATCTCTCATCAACACGCTTGT
TTCATTGGAAGGGGAAGTCCATGACCATCGTAACCGTAGGAATCGACCTGGCAAAGAACGTCTTTGCCGTACACGGCGTGGATGCGGCAGGCAAGCCAGC
CCTCGTGCGCCCGAGCGTAGCGCGCAGCAACCTGCTGGAACTCATCGCCACCTTGCCCCCGTGCCTGATCGGCATGGAGGCATGCTCCGGCGCCCACCAC
TGGGCCCGGGAATTCGAGAAGCTCGGCCACACCGTGCGCCTGATGGCCCCCAAGTTCGTCGCCCCCTACCGCCTCTCGGGCAAACGCGGCAAGAACGACG
CGGCCGATGCCGCAGCGATCTGCGAAGCCGTCACCCGCCCCCAGATGCGTTTCGTGCCCCACAAGAGCATCGAGCAGCAAGGCCAGCTCATGGTGCACCG
CACACGCCAGGGATTCGTGGAACAACGCACCGCCACGCTCAACCGCATTCGGGGTCTGCTCTCGGAGCTGGGCATCGTGCTGCCCCTCAAAGCCGCCACC
GTGCGCCGTGAAGCGCTGGCACGCCTCGAAGAGCTGCCCGGCTGGGCCAACACTGTCATCGGCGATCTCTTGAGTGAAGTCACCCGGCTTGATGAACGCA
TCACCGAGTACGACCGCCACATCGCCCTCATGGCCCGCCACAGCACCCAGGCGCAGCAGTTGATGCAACTCGGCGGTATTGGCCAGACCACCGCCATGGC
ACTCATCAGCACCGTGGGCAATGGCCACGACTTCGCCTGCGGGCGCAGCTTCAGCGCCTGGCTGGGCTTGGTGCCCGGGCAATACAGCTCGGGCGGCAAG
CAGAGATTGGGACGCATCACCAAAGCCGGAGATGCCTACCTGCGCAGCCTGCTGGTGATGGGAGCCAGAGCGGTGCTTGCCGCTGCCATGAACACCCGCA
CGCCCAAGCAAGACCCCATCAGCCGCTGGGCCCGCAGCCTGGCCGAGCGCCGAGGCTACTGGCGCGCCGTGGTGGCCATTGCCGCCAAGAACGCCCGCAT
GTGCTGGGCCGTGCTGCAGCGCGGAGATGCCTTCAAGATGCCCGCGTGAGCTGGGCCGGCTACGCACACAGACACCAGACAAGCTGACAGATCAGAAATC
CGCCGCGTGAAGGCAGTCGTTGATGTGCAAAAGGCAAGGACCTGCGCCGGGGAATGCTCGGTTAACTCAAGGGGACCCATGGGAGCCATCCCAAAGCCCG
ACTAACGAATGGAGCCCCCGGCGCGCGTCTTTCATCAGGGTTTGCTGCCAACCAGAAGGCAGCGTAATGACCGTTTGTAGTCACGCCGTCCGCACCGTTT
GCCAAGAAGCATCGACGCGCTGCATGCACAAGGCTGGGAGCTGATCTGAAATTGACGAAAACCATGCCTGGGTTGATCGCTGTGCGATCAACCCAGGGAG
AGGTATTGCTTGCAAAGGTGGGGAAGCCCTTGTA
TTCATTGGAAGGGGAAGTCCATGACCATCGTAACCGTAGGAATCGACCTGGCAAAGAACGTCTTTGCCGTACACGGCGTGGATGCGGCAGGCAAGCCAGC
CCTCGTGCGCCCGAGCGTAGCGCGCAGCAACCTGCTGGAACTCATCGCCACCTTGCCCCCGTGCCTGATCGGCATGGAGGCATGCTCCGGCGCCCACCAC
TGGGCCCGGGAATTCGAGAAGCTCGGCCACACCGTGCGCCTGATGGCCCCCAAGTTCGTCGCCCCCTACCGCCTCTCGGGCAAACGCGGCAAGAACGACG
CGGCCGATGCCGCAGCGATCTGCGAAGCCGTCACCCGCCCCCAGATGCGTTTCGTGCCCCACAAGAGCATCGAGCAGCAAGGCCAGCTCATGGTGCACCG
CACACGCCAGGGATTCGTGGAACAACGCACCGCCACGCTCAACCGCATTCGGGGTCTGCTCTCGGAGCTGGGCATCGTGCTGCCCCTCAAAGCCGCCACC
GTGCGCCGTGAAGCGCTGGCACGCCTCGAAGAGCTGCCCGGCTGGGCCAACACTGTCATCGGCGATCTCTTGAGTGAAGTCACCCGGCTTGATGAACGCA
TCACCGAGTACGACCGCCACATCGCCCTCATGGCCCGCCACAGCACCCAGGCGCAGCAGTTGATGCAACTCGGCGGTATTGGCCAGACCACCGCCATGGC
ACTCATCAGCACCGTGGGCAATGGCCACGACTTCGCCTGCGGGCGCAGCTTCAGCGCCTGGCTGGGCTTGGTGCCCGGGCAATACAGCTCGGGCGGCAAG
CAGAGATTGGGACGCATCACCAAAGCCGGAGATGCCTACCTGCGCAGCCTGCTGGTGATGGGAGCCAGAGCGGTGCTTGCCGCTGCCATGAACACCCGCA
CGCCCAAGCAAGACCCCATCAGCCGCTGGGCCCGCAGCCTGGCCGAGCGCCGAGGCTACTGGCGCGCCGTGGTGGCCATTGCCGCCAAGAACGCCCGCAT
GTGCTGGGCCGTGCTGCAGCGCGGAGATGCCTTCAAGATGCCCGCGTGAGCTGGGCCGGCTACGCACACAGACACCAGACAAGCTGACAGATCAGAAATC
CGCCGCGTGAAGGCAGTCGTTGATGTGCAAAAGGCAAGGACCTGCGCCGGGGAATGCTCGGTTAACTCAAGGGGACCCATGGGAGCCATCCCAAAGCCCG
ACTAACGAATGGAGCCCCCGGCGCGCGTCTTTCATCAGGGTTTGCTGCCAACCAGAAGGCAGCGTAATGACCGTTTGTAGTCACGCCGTCCGCACCGTTT
GCCAAGAAGCATCGACGCGCTGCATGCACAAGGCTGGGAGCTGATCTGAAATTGACGAAAACCATGCCTGGGTTGATCGCTGTGCGATCAACCCAGGGAG
AGGTATTGCTTGCAAAGGTGGGGAAGCCCTTGTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 121 | 1149 | + | No |
Chemistry : DEDD
ORF sequence :
MTIVTVGIDLAKNVFAVHGVDAAGKPALVRPSVARSNLLELIATLPPCLIGMEACSGAHHWAREFEKLGHTVRLMAPKFVAPYRLSGKRGKNDAADAAAI
CEAVTRPQMRFVPHKSIEQQGQLMVHRTRQGFVEQRTATLNRIRGLLSELGIVLPLKAATVRREALARLEELPGWANTVIGDLLSEVTRLDERITEYDRH
IALMARHSTQAQQLMQLGGIGQTTAMALISTVGNGHDFACGRSFSAWLGLVPGQYSSGGKQRLGRITKAGDAYLRSLLVMGARAVLAAAMNTRTPKQDPI
SRWARSLAERRGYWRAVVAIAAKNARMCWAVLQRGDAFKMPA
CEAVTRPQMRFVPHKSIEQQGQLMVHRTRQGFVEQRTATLNRIRGLLSELGIVLPLKAATVRREALARLEELPGWANTVIGDLLSEVTRLDERITEYDRH
IALMARHSTQAQQLMQLGGIGQTTAMALISTVGNGHDFACGRSFSAWLGLVPGQYSSGGKQRLGRITKAGDAYLRSLLVMGARAVLAAAMNTRTPKQDPI
SRWARSLAERRGYWRAVVAIAAKNARMCWAVLQRGDAFKMPA
Blast result :
Comments
ISPa29 is 78% aa similare to IS1492.
References
1] Poirel, L. (2008) Direct submission.