ISSpu13
- Family ISAs1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009438 | ND | Shewanella putrefaciens | Shewanella putrefaciens CN-32 |
DNA section
IS Length : 1240 bp
Ends
IR Length : 15/17
IRL : CAGGGGCTGATCATACTCGATCGCTTTTTATGCATAACCCTTAAAAACAA
IRR : CAGGGGCTGATTACACTTTTTGACCAGTTCCAAAAATAATCTCTTCTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATCAATCCA | ATATAAAAT | AACGATGCAA | 9 |
DNA sequence
CAGGGGCTGATCATACTCGATCGCTTTTTATGCATAACCCTTAAAAACAATGAGATAAGAAATAGCTTGATTGATCCCGCCAATGTGATCAAATAGGTCA
CTTTTTCTTTGTCTTTTGACCTATATATGCTCAAACATCTCGATAACATTACTGATTGCCGTTCCCATATAAATCAAGAACATGATGTCATTGACATCTG
TTTTCTTGTGCTTAGTGCCGTCATCTCAGGCGCTCAAAGCTGGTCTGCTTGCCATGAATTCGGCACATTGGAATTGGAATGGTTACGGAAATACCGCCCC
TTTACCAATGGTATTCCCAGCCAGCAGAGTATTGGTCGTATTTTTAGAGGAGTGTCGAAGCAATCACTGCTTGATGCACTGATGAGTTGGGTGAATGAGT
ATCGCGTCAATACAGGACAATCTTCTATTGCTATCGATGGTAAAGTGTTAAAAGGTGCCAAAGCATCAGCCTCAAGTGCGGCGTTACATATGGTAACCGC
ATATGATACAGGCTCTGGCTTAGTATTCAGCGCGAAATCAGGTGCGAGTAAAAAGAGTGAACTTAAACTTGTGCAAGAACTGCTTACGTGTCTTGATTTG
AAATCGGAATTACTTACATTTGATGCGTTGCACTGTCAATCACAAACACTTGATTACATAGCAAAAGAAGGTGGAGATTGCATTCTGCAAGTAAAAGGGA
ATCAGCCCAAACTGTACGAGGCTCTACAGGCACAATTTACTGATTACATTGAAAATAACCCTGATGCAGAATGCTTTACCGAAACTAATAAAGGGCATGG
TCGAGTTGAAAAACGAATAACGTTTCAATGTCCACTGAATTTACCCGCCGAGATAAAGATGAAGTGGTCTCAACTAAAAACATTAATCGCAGTAGAACGT
CATCGAAAAGTGGGTAATAAAACCAGTATAGACACACATTTTTATGTCAGCAGTGCAGTGCTAACATCAGAAGCCTTTGGTAGAGCGATTAGGGCTCATT
GGCAAACTGAAAATAATCAACATTGGCTTTTAGATAAGCTATTTCAAGAAGATAAGCAGAAAATGTATGATGAAGATGGCGCCAGTATCTTGGCCATTTT
ACGCCGCTGGGCCTTAAATCTGGTGAAATTACACCCAGCTAAAACCAGCCAAACTCAAAAATTTAATCGAGCATGTTGGAGTGATGACTTCAGAGAAGAG
ATTATTTTTGGAACTGGTCAAAAAGTGTAATCAGCCCCTG
CTTTTTCTTTGTCTTTTGACCTATATATGCTCAAACATCTCGATAACATTACTGATTGCCGTTCCCATATAAATCAAGAACATGATGTCATTGACATCTG
TTTTCTTGTGCTTAGTGCCGTCATCTCAGGCGCTCAAAGCTGGTCTGCTTGCCATGAATTCGGCACATTGGAATTGGAATGGTTACGGAAATACCGCCCC
TTTACCAATGGTATTCCCAGCCAGCAGAGTATTGGTCGTATTTTTAGAGGAGTGTCGAAGCAATCACTGCTTGATGCACTGATGAGTTGGGTGAATGAGT
ATCGCGTCAATACAGGACAATCTTCTATTGCTATCGATGGTAAAGTGTTAAAAGGTGCCAAAGCATCAGCCTCAAGTGCGGCGTTACATATGGTAACCGC
ATATGATACAGGCTCTGGCTTAGTATTCAGCGCGAAATCAGGTGCGAGTAAAAAGAGTGAACTTAAACTTGTGCAAGAACTGCTTACGTGTCTTGATTTG
AAATCGGAATTACTTACATTTGATGCGTTGCACTGTCAATCACAAACACTTGATTACATAGCAAAAGAAGGTGGAGATTGCATTCTGCAAGTAAAAGGGA
ATCAGCCCAAACTGTACGAGGCTCTACAGGCACAATTTACTGATTACATTGAAAATAACCCTGATGCAGAATGCTTTACCGAAACTAATAAAGGGCATGG
TCGAGTTGAAAAACGAATAACGTTTCAATGTCCACTGAATTTACCCGCCGAGATAAAGATGAAGTGGTCTCAACTAAAAACATTAATCGCAGTAGAACGT
CATCGAAAAGTGGGTAATAAAACCAGTATAGACACACATTTTTATGTCAGCAGTGCAGTGCTAACATCAGAAGCCTTTGGTAGAGCGATTAGGGCTCATT
GGCAAACTGAAAATAATCAACATTGGCTTTTAGATAAGCTATTTCAAGAAGATAAGCAGAAAATGTATGATGAAGATGGCGCCAGTATCTTGGCCATTTT
ACGCCGCTGGGCCTTAAATCTGGTGAAATTACACCCAGCTAAAACCAGCCAAACTCAAAAATTTAATCGAGCATGTTGGAGTGATGACTTCAGAGAAGAG
ATTATTTTTGGAACTGGTCAAAAAGTGTAATCAGCCCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1104 bp | 367 aa | 127 | 1230 | + | No |
Chemistry : Unknow
ORF sequence :
MLKHLDNITDCRSHINQEHDVIDICFLVLSAVISGAQSWSACHEFGTLELEWLRKYRPFTNGIPSQQSIGRIFRGVSKQSLLDALMSWVNEYRVNTGQSS
IAIDGKVLKGAKASASSAALHMVTAYDTGSGLVFSAKSGASKKSELKLVQELLTCLDLKSELLTFDALHCQSQTLDYIAKEGGDCILQVKGNQPKLYEAL
QAQFTDYIENNPDAECFTETNKGHGRVEKRITFQCPLNLPAEIKMKWSQLKTLIAVERHRKVGNKTSIDTHFYVSSAVLTSEAFGRAIRAHWQTENNQHW
LLDKLFQEDKQKMYDEDGASILAILRRWALNLVKLHPAKTSQTQKFNRACWSDDFREEIIFGTGQKV
IAIDGKVLKGAKASASSAALHMVTAYDTGSGLVFSAKSGASKKSELKLVQELLTCLDLKSELLTFDALHCQSQTLDYIAKEGGDCILQVKGNQPKLYEAL
QAQFTDYIENNPDAECFTETNKGHGRVEKRITFQCPLNLPAEIKMKWSQLKTLIAVERHRKVGNKTSIDTHFYVSSAVLTSEAFGRAIRAHWQTENNQHW
LLDKLFQEDKQKMYDEDGASILAILRRWALNLVKLHPAKTSQTQKFNRACWSDDFREEIIFGTGQKV
Blast result :
Comments
There is one copy of ISSpu13 encoded in the Shewanella putrefaciens CN-32 genome.
The transposase encoded by ISSpu13 has 45% identity to that encoded by ISSba2.
The transposase encoded by ISSpu13 has 45% identity to that encoded by ISSba2.
References
1]Romine, M.F. (2008) Direct submission.