ISSpu13

  • Family ISAs1
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009438 ND Shewanella putrefaciens
Shewanella putrefaciens CN-32
DNA section
IS Length : 1240 bp

Ends


IR Length : 15/17

IRL : CAGGGGCTGATCATACTCGATCGCTTTTTATGCATAACCCTTAAAAACAA
IRR : CAGGGGCTGATTACACTTTTTGACCAGTTCCAAAAATAATCTCTTCTCTG

Insertion site


Left flankDirect repeatRight flankDR Length
AATCAATCCAATATAAAATAACGATGCAA9

DNA sequence

CAGGGGCTGATCATACTCGATCGCTTTTTATGCATAACCCTTAAAAACAATGAGATAAGAAATAGCTTGATTGATCCCGCCAATGTGATCAAATAGGTCA
CTTTTTCTTTGTCTTTTGACCTATATATGCTCAAACATCTCGATAACATTACTGATTGCCGTTCCCATATAAATCAAGAACATGATGTCATTGACATCTG
TTTTCTTGTGCTTAGTGCCGTCATCTCAGGCGCTCAAAGCTGGTCTGCTTGCCATGAATTCGGCACATTGGAATTGGAATGGTTACGGAAATACCGCCCC
TTTACCAATGGTATTCCCAGCCAGCAGAGTATTGGTCGTATTTTTAGAGGAGTGTCGAAGCAATCACTGCTTGATGCACTGATGAGTTGGGTGAATGAGT
ATCGCGTCAATACAGGACAATCTTCTATTGCTATCGATGGTAAAGTGTTAAAAGGTGCCAAAGCATCAGCCTCAAGTGCGGCGTTACATATGGTAACCGC
ATATGATACAGGCTCTGGCTTAGTATTCAGCGCGAAATCAGGTGCGAGTAAAAAGAGTGAACTTAAACTTGTGCAAGAACTGCTTACGTGTCTTGATTTG
AAATCGGAATTACTTACATTTGATGCGTTGCACTGTCAATCACAAACACTTGATTACATAGCAAAAGAAGGTGGAGATTGCATTCTGCAAGTAAAAGGGA
ATCAGCCCAAACTGTACGAGGCTCTACAGGCACAATTTACTGATTACATTGAAAATAACCCTGATGCAGAATGCTTTACCGAAACTAATAAAGGGCATGG
TCGAGTTGAAAAACGAATAACGTTTCAATGTCCACTGAATTTACCCGCCGAGATAAAGATGAAGTGGTCTCAACTAAAAACATTAATCGCAGTAGAACGT
CATCGAAAAGTGGGTAATAAAACCAGTATAGACACACATTTTTATGTCAGCAGTGCAGTGCTAACATCAGAAGCCTTTGGTAGAGCGATTAGGGCTCATT
GGCAAACTGAAAATAATCAACATTGGCTTTTAGATAAGCTATTTCAAGAAGATAAGCAGAAAATGTATGATGAAGATGGCGCCAGTATCTTGGCCATTTT
ACGCCGCTGGGCCTTAAATCTGGTGAAATTACACCCAGCTAAAACCAGCCAAACTCAAAAATTTAATCGAGCATGTTGGAGTGATGACTTCAGAGAAGAG
ATTATTTTTGGAACTGGTCAAAAAGTGTAATCAGCCCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1104 bp367 aa1271230+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MLKHLDNITDCRSHINQEHDVIDICFLVLSAVISGAQSWSACHEFGTLELEWLRKYRPFTNGIPSQQSIGRIFRGVSKQSLLDALMSWVNEYRVNTGQSS
IAIDGKVLKGAKASASSAALHMVTAYDTGSGLVFSAKSGASKKSELKLVQELLTCLDLKSELLTFDALHCQSQTLDYIAKEGGDCILQVKGNQPKLYEAL
QAQFTDYIENNPDAECFTETNKGHGRVEKRITFQCPLNLPAEIKMKWSQLKTLIAVERHRKVGNKTSIDTHFYVSSAVLTSEAFGRAIRAHWQTENNQHW
LLDKLFQEDKQKMYDEDGASILAILRRWALNLVKLHPAKTSQTQKFNRACWSDDFREEIIFGTGQKV

 

Blast result :
Comments
There is one copy of ISSpu13 encoded in the Shewanella putrefaciens CN-32 genome.
The transposase encoded by ISSpu13 has 45% identity to that encoded by ISSba2.
References
1]Romine, M.F. (2008) Direct submission.