ISSpu14
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009438 | ND | Shewanella putrefaciens | Shewanella putrefaciens CN-32 |
DNA section
IS Length : 1052 bp
Ends
IR Length : 13/17
IRL : GGCGTTGTTGCCTAAATCGAAGGAACCATTTGGTCACTCTGTGATCTGAT
IRR : GGCCTTGTTGATCAAATAACTGCTTGAGATGCAGCTATACCAAAGTTTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGATAAAAAT | AACTGTATGA | 0 |
DNA sequence
GGCGTTGTTGCCTAAATCGAAGGAACCATTTGGTCACTCTGTGATCTGATCTTGTAAGTACCAACACGAGACAGGCTACATGGGCAAATCCAAACGTAAA
ATACTTAACTGGAAACAGTACAACCAAGCATTAGTCAATCGAGGTTCGGTCACTTTTTGGCTGGATAAATCAGCCATCAATGCTTGGCACTGCAAAGCCC
ATCACGGCGGTCGTGGTAGAGGTTTTCAATTCAGTGATACAGCGATTGAAACAGCCCTCATGCTCAAAGGCGTATTTAAGTTGTCACTGCGAGCAACTGA
AGGCTTCATAAATTCTCTGTTTCGACTGATGGATGTGCCATTAGCGGCACCGGATTACACTTGTATAAGCAAACGGGCAAAGACTGTTGAGGTTAAGTAT
CGTAACCCCTGTCGAGGCCCCGTTACTCATCTTGTCGTCGATTCAACAGGATTGAAAGTTTACGGTGAAGGCGAATGGAAAACGCGCAAGCACGGTAAGG
AGCGGCGACGCACGTGGCGTAAGTTACACCTCGCGATTGACGCAGATACTCACGATGTTGTATCAGCCGAAGTCAGCCTCGTTAATGTGGCTGATAACGA
AGTATTACCGACAATGCTCAATCCGCTTCGTCGGAAGGTCAATCAAGTCTCAGCCGATGGTGCATACGACACAAAAGAGTGCCACAAATTGCTGCGACAC
AAAGGTGCAAAACCAACTATTCCGCCGCGTTCAAACGCAGGATATTGGGAAGATGGTCACCCGCGAAATGAAGCTGTTGAAGCATTGAAATCTGGGACGT
TAAAGCAATGGAAAGACGACAATGATTACCATCAACGCTCGCTATCGGAGACAGCGATGTATCGTTATAAACAGCTCATCAGTTCCAAGTTAAGCTTACG
TGATTACAATGCACAGGTCGGGGAAGCTTTGGCTGGTGTAAAAGCGATGAACAAAGTCATAGGGCTAGGTATGCCTGTTCGACAGACAACTGCATAAACA
CGGGAAACTTTGGTATAGCTGCATCTCAAGCAGTTATTTGATCAACAAGGCC
ATACTTAACTGGAAACAGTACAACCAAGCATTAGTCAATCGAGGTTCGGTCACTTTTTGGCTGGATAAATCAGCCATCAATGCTTGGCACTGCAAAGCCC
ATCACGGCGGTCGTGGTAGAGGTTTTCAATTCAGTGATACAGCGATTGAAACAGCCCTCATGCTCAAAGGCGTATTTAAGTTGTCACTGCGAGCAACTGA
AGGCTTCATAAATTCTCTGTTTCGACTGATGGATGTGCCATTAGCGGCACCGGATTACACTTGTATAAGCAAACGGGCAAAGACTGTTGAGGTTAAGTAT
CGTAACCCCTGTCGAGGCCCCGTTACTCATCTTGTCGTCGATTCAACAGGATTGAAAGTTTACGGTGAAGGCGAATGGAAAACGCGCAAGCACGGTAAGG
AGCGGCGACGCACGTGGCGTAAGTTACACCTCGCGATTGACGCAGATACTCACGATGTTGTATCAGCCGAAGTCAGCCTCGTTAATGTGGCTGATAACGA
AGTATTACCGACAATGCTCAATCCGCTTCGTCGGAAGGTCAATCAAGTCTCAGCCGATGGTGCATACGACACAAAAGAGTGCCACAAATTGCTGCGACAC
AAAGGTGCAAAACCAACTATTCCGCCGCGTTCAAACGCAGGATATTGGGAAGATGGTCACCCGCGAAATGAAGCTGTTGAAGCATTGAAATCTGGGACGT
TAAAGCAATGGAAAGACGACAATGATTACCATCAACGCTCGCTATCGGAGACAGCGATGTATCGTTATAAACAGCTCATCAGTTCCAAGTTAAGCTTACG
TGATTACAATGCACAGGTCGGGGAAGCTTTGGCTGGTGTAAAAGCGATGAACAAAGTCATAGGGCTAGGTATGCCTGTTCGACAGACAACTGCATAAACA
CGGGAAACTTTGGTATAGCTGCATCTCAAGCAGTTATTTGATCAACAAGGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
918 bp | 305 aa | 80 | 997 | + | No |
Chemistry : DDE
ORF sequence :
MGKSKRKILNWKQYNQALVNRGSVTFWLDKSAINAWHCKAHHGGRGRGFQFSDTAIETALMLKGVFKLSLRATEGFINSLFRLMDVPLAAPDYTCISKRA
KTVEVKYRNPCRGPVTHLVVDSTGLKVYGEGEWKTRKHGKERRRTWRKLHLAIDADTHDVVSAEVSLVNVADNEVLPTMLNPLRRKVNQVSADGAYDTKE
CHKLLRHKGAKPTIPPRSNAGYWEDGHPRNEAVEALKSGTLKQWKDDNDYHQRSLSETAMYRYKQLISSKLSLRDYNAQVGEALAGVKAMNKVIGLGMPV
RQTTA
KTVEVKYRNPCRGPVTHLVVDSTGLKVYGEGEWKTRKHGKERRRTWRKLHLAIDADTHDVVSAEVSLVNVADNEVLPTMLNPLRRKVNQVSADGAYDTKE
CHKLLRHKGAKPTIPPRSNAGYWEDGHPRNEAVEALKSGTLKQWKDDNDYHQRSLSETAMYRYKQLISSKLSLRDYNAQVGEALAGVKAMNKVIGLGMPV
RQTTA
Blast result :
Comments
There is one copy of ISSpu14 encoded in the S. putrefaciens CN-32 genome.
The ISSpu14 transposase has 70% identity to that encoded by ISVa1.
The ISSpu14 transposase has 70% identity to that encoded by ISVa1.
References
1]Romine, M.F. (2008) Direct submission.