ISSpu14

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009438 ND Shewanella putrefaciens
Shewanella putrefaciens CN-32
DNA section
IS Length : 1052 bp

Ends


IR Length : 13/17

IRL : GGCGTTGTTGCCTAAATCGAAGGAACCATTTGGTCACTCTGTGATCTGAT
IRR : GGCCTTGTTGATCAAATAACTGCTTGAGATGCAGCTATACCAAAGTTTCC

Insertion site


Left flankDirect repeatRight flankDR Length
AGATAAAAATAACTGTATGA0

DNA sequence

GGCGTTGTTGCCTAAATCGAAGGAACCATTTGGTCACTCTGTGATCTGATCTTGTAAGTACCAACACGAGACAGGCTACATGGGCAAATCCAAACGTAAA
ATACTTAACTGGAAACAGTACAACCAAGCATTAGTCAATCGAGGTTCGGTCACTTTTTGGCTGGATAAATCAGCCATCAATGCTTGGCACTGCAAAGCCC
ATCACGGCGGTCGTGGTAGAGGTTTTCAATTCAGTGATACAGCGATTGAAACAGCCCTCATGCTCAAAGGCGTATTTAAGTTGTCACTGCGAGCAACTGA
AGGCTTCATAAATTCTCTGTTTCGACTGATGGATGTGCCATTAGCGGCACCGGATTACACTTGTATAAGCAAACGGGCAAAGACTGTTGAGGTTAAGTAT
CGTAACCCCTGTCGAGGCCCCGTTACTCATCTTGTCGTCGATTCAACAGGATTGAAAGTTTACGGTGAAGGCGAATGGAAAACGCGCAAGCACGGTAAGG
AGCGGCGACGCACGTGGCGTAAGTTACACCTCGCGATTGACGCAGATACTCACGATGTTGTATCAGCCGAAGTCAGCCTCGTTAATGTGGCTGATAACGA
AGTATTACCGACAATGCTCAATCCGCTTCGTCGGAAGGTCAATCAAGTCTCAGCCGATGGTGCATACGACACAAAAGAGTGCCACAAATTGCTGCGACAC
AAAGGTGCAAAACCAACTATTCCGCCGCGTTCAAACGCAGGATATTGGGAAGATGGTCACCCGCGAAATGAAGCTGTTGAAGCATTGAAATCTGGGACGT
TAAAGCAATGGAAAGACGACAATGATTACCATCAACGCTCGCTATCGGAGACAGCGATGTATCGTTATAAACAGCTCATCAGTTCCAAGTTAAGCTTACG
TGATTACAATGCACAGGTCGGGGAAGCTTTGGCTGGTGTAAAAGCGATGAACAAAGTCATAGGGCTAGGTATGCCTGTTCGACAGACAACTGCATAAACA
CGGGAAACTTTGGTATAGCTGCATCTCAAGCAGTTATTTGATCAACAAGGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
918 bp305 aa80997+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGKSKRKILNWKQYNQALVNRGSVTFWLDKSAINAWHCKAHHGGRGRGFQFSDTAIETALMLKGVFKLSLRATEGFINSLFRLMDVPLAAPDYTCISKRA
KTVEVKYRNPCRGPVTHLVVDSTGLKVYGEGEWKTRKHGKERRRTWRKLHLAIDADTHDVVSAEVSLVNVADNEVLPTMLNPLRRKVNQVSADGAYDTKE
CHKLLRHKGAKPTIPPRSNAGYWEDGHPRNEAVEALKSGTLKQWKDDNDYHQRSLSETAMYRYKQLISSKLSLRDYNAQVGEALAGVKAMNKVIGLGMPV
RQTTA

 

Blast result :
Comments
There is one copy of ISSpu14 encoded in the S. putrefaciens CN-32 genome.
The ISSpu14 transposase has 70% identity to that encoded by ISVa1.
References
1]Romine, M.F. (2008) Direct submission.