ISSpu18
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009438 | ND | Shewanella putrefaciens | Shewanella putrefaciens CN-32 |
DNA section
IS Length : 1199 bp
Ends
IR Length : 22/26
IRL : TGTATTAGTCCCGACTTGATCTGACACATCTACTTGAAAAGATGAGAGTT
IRR : TGTACTAGCTCAGACTTGATCTGACAGTTACCAGTTTTTCACGGTGTCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTAATACTAT | TTTAATG | GTAGTTTACC | 7 |
DNA sequence
TGTATTAGTCCCGACTTGATCTGACACATCTACTTGAAAAGATGAGAGTTACCAGTTTTGATATGGGTGTCGAATCCGTAATCAAAAACAAAAGGTAACT
CTCATGCTGCATACTAACAATCCGATAATTAAACACAAGGCTGGGCTGCTGAATTTAGCTCAGGAGCTTAATAACGTCTCAAAAGCCTGCAAGGTTATGG
GCGTGTCACGGGATACGTTTTACCGCTATCAGGAGCTTGTTGCTGAAGGTGGCGTTGATGCTCTCATCGATAAAAGCCGCAGAGCGCCGAATCTCAAGAA
TCGAGTGGATGAAACCATCGAGAAAGCGGTTATTGATTATGCTATCGGGTATCCGGCTCATGGCCAGCATCGAACCAGTAATGAGCTACGTAAACAAGGC
GTGTTCGTCTCTGGCAGCGGTGTTCGCTCTGTCTGGCTACGACACGACTTGGAGAACTTCAAGAAACGCTTAAAAGCGCTGGAAGCAAAGGTTGCGAAGG
AAGGTATTTTACTGACTGATGCGCAGATTGCCGCGCTTGAGAAGAAAAAACATGACGATGAAGCCTGCGGTGAGATTGAGACTGCCCACCCAGGTTACCT
GGGCTCGCAGGATACGTTTTATGTCGGCAACCTGAAGGGCGTTGGCCGGATTTACCAGCAAACCTACGTCGATACTTACAGCAAAATCGCACATTGTAAG
CTGTATACCACCAAGACGCCGATCACAGCAGCAGACTTACTCAACGACAAAGTGCTGCCATTCTACGAGGCTCAGGGCTTGCCTGTGCTGCGTATTCTGA
CTGACCGGGGTACAGAATACTGTGGCAAAGTAGAACAGTACGACTACCAGCTGTATCTGGCGATCAACGACATTGACCACACTAAAACTAAAGACATGTC
GCCGCAAACGAACGGGATCTGCGAACGGTTCCACAAGACGATATTGCAGGAGTTCTATCAGGTTACGTTCCGTAAAAAGCTCTATGGCGACCTGGCAGAG
CTACAAAAAGATCTGGACGAATGGCTGGTTTATTACAACAATGACCGAACTCATCAGGGCAAGATGTGCAATGGCAGAACGCCAATGGATACTTTGCTGG
ATGGAAAGCAGGTTTGGGTGCAGAAGAATCTGACTCAAATCTAATCTGACAGACACCGTGAAAAACTGGTAACTGTCAGATCAAGTCTGAGCTAGTACA
CTCATGCTGCATACTAACAATCCGATAATTAAACACAAGGCTGGGCTGCTGAATTTAGCTCAGGAGCTTAATAACGTCTCAAAAGCCTGCAAGGTTATGG
GCGTGTCACGGGATACGTTTTACCGCTATCAGGAGCTTGTTGCTGAAGGTGGCGTTGATGCTCTCATCGATAAAAGCCGCAGAGCGCCGAATCTCAAGAA
TCGAGTGGATGAAACCATCGAGAAAGCGGTTATTGATTATGCTATCGGGTATCCGGCTCATGGCCAGCATCGAACCAGTAATGAGCTACGTAAACAAGGC
GTGTTCGTCTCTGGCAGCGGTGTTCGCTCTGTCTGGCTACGACACGACTTGGAGAACTTCAAGAAACGCTTAAAAGCGCTGGAAGCAAAGGTTGCGAAGG
AAGGTATTTTACTGACTGATGCGCAGATTGCCGCGCTTGAGAAGAAAAAACATGACGATGAAGCCTGCGGTGAGATTGAGACTGCCCACCCAGGTTACCT
GGGCTCGCAGGATACGTTTTATGTCGGCAACCTGAAGGGCGTTGGCCGGATTTACCAGCAAACCTACGTCGATACTTACAGCAAAATCGCACATTGTAAG
CTGTATACCACCAAGACGCCGATCACAGCAGCAGACTTACTCAACGACAAAGTGCTGCCATTCTACGAGGCTCAGGGCTTGCCTGTGCTGCGTATTCTGA
CTGACCGGGGTACAGAATACTGTGGCAAAGTAGAACAGTACGACTACCAGCTGTATCTGGCGATCAACGACATTGACCACACTAAAACTAAAGACATGTC
GCCGCAAACGAACGGGATCTGCGAACGGTTCCACAAGACGATATTGCAGGAGTTCTATCAGGTTACGTTCCGTAAAAAGCTCTATGGCGACCTGGCAGAG
CTACAAAAAGATCTGGACGAATGGCTGGTTTATTACAACAATGACCGAACTCATCAGGGCAAGATGTGCAATGGCAGAACGCCAATGGATACTTTGCTGG
ATGGAAAGCAGGTTTGGGTGCAGAAGAATCTGACTCAAATCTAATCTGACAGACACCGTGAAAAACTGGTAACTGTCAGATCAAGTCTGAGCTAGTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1041 bp | 346 aa | 104 | 1144 | + | No |
Chemistry : DDE
ORF sequence :
MLHTNNPIIKHKAGLLNLAQELNNVSKACKVMGVSRDTFYRYQELVAEGGVDALIDKSRRAPNLKNRVDETIEKAVIDYAIGYPAHGQHRTSNELRKQGV
FVSGSGVRSVWLRHDLENFKKRLKALEAKVAKEGILLTDAQIAALEKKKHDDEACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTYVDTYSKIAHCKL
YTTKTPITAADLLNDKVLPFYEAQGLPVLRILTDRGTEYCGKVEQYDYQLYLAINDIDHTKTKDMSPQTNGICERFHKTILQEFYQVTFRKKLYGDLAEL
QKDLDEWLVYYNNDRTHQGKMCNGRTPMDTLLDGKQVWVQKNLTQI
FVSGSGVRSVWLRHDLENFKKRLKALEAKVAKEGILLTDAQIAALEKKKHDDEACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTYVDTYSKIAHCKL
YTTKTPITAADLLNDKVLPFYEAQGLPVLRILTDRGTEYCGKVEQYDYQLYLAINDIDHTKTKDMSPQTNGICERFHKTILQEFYQVTFRKKLYGDLAEL
QKDLDEWLVYYNNDRTHQGKMCNGRTPMDTLLDGKQVWVQKNLTQI
Blast result :
Comments
There is one copy of ISSpu18 encoded by Shewanella putrefaciens CN-32.
The ISSpu18 transposase has 86% identity with that encoded by ISSod13.
The ISSpu18 transposase has 86% identity with that encoded by ISSod13.
References
1]Romine, M.F. (2008) Direct submission.