ISSpu17

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009438 ND Shewanella putrefaciens
Shewanella putrefaciens 200
Shewanella putrefaciens CN-32
Shewanella putrefaciens W3-18-1
DNA section
IS Length : 818 bp

Ends


IR Length : 18/19

IRL : GGCTCTGTCGCAAACTGAGGAACGAGTTTATCATGAGCGATGCTCTCTTA
IRR : GGTTCTGTCGCAAACTGAGAGCTTGCAGCTAAGATTTGAGGGCGCAAGAT

Insertion site


Left flankDirect repeatRight flankDR Length
CAGATCAACTCTATTTTTTA0
CAGATCAACTCTATTTTTTA0
CAGATCAACTCTATTTTTTA0

DNA sequence

GGCTCTGTCGCAAACTGAGGAACGAGTTTATCATGAGCGATGCTCTCTTAACTAACATCATCAATGTCGCTAAACTTTTCTGGACGCCATTTCCCAACAG
ATATCATCATGCAAGCCCTACGATATTACCTGGCCTATAAACTGAGTTACCGTGAAATTGAGGAGATGTTCGCTGAACGTAATATCCATTTTGACCACTC
AACACTGAACCGTTGGGTTATCAAATATGCGCCGCAACTCGAAGCCGTATTCAGGAAGAGAAAGCGTCGAGTATCAGGGTCGTGGCGAATGGACGAAACC
TACATAAAGATTAAAGGTCGCTGGGTTTACTATTATCGCGCCGTGGATAAATACGGTGCTATTATTGATTTTTATTTGAGTGAGACCCGTGATGAACCCG
CTGCTCGGGCGTTTTTCAATAAAGCTATCAACCAACATGGCTTACCTGAAAAGGTCGTCATTGATCAAAGTGGGGCGAATGCTGCGGCATTAGACACCAT
TAATATTCGTCTTTGGCTGTCTGGTTGCATGTTGTTTATGATTGAGGTTTTAGCCATAAAATATCTGAATAATATTGTTGAGCAAAGTCATCGAAAAGTG
AAAGGTAAAATGATCAATGTTTGGGTTGGAAGTCTTGGGAAGGTGCCGAATCAACGCTTGCTGGCGTTGAACTTTGGTTCATGATAAAGCAAGGGCAAAT
GAACACCACCGAAAAGATGACACCATGGGAACAATTTTATTCTTTAGCCGCATAATTATATCTGAGGGATCTTGCGCCCTCAAATCTTAGCTGCAAGCTC
TCAGTTTGCGACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
621 bp206 aa64684+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSLNFSGRHFPTDIIMQALRYYLAYKLSYREIEEMFAERNIHFDHSTLNRWVIKYAPQLEAVFRKRKRRVSGSWRMDETYIKIKGRWVYYYRAVDKYGAI
IDFYLSETRDEPAARAFFNKAINQHGLPEKVVIDQSGANAAALDTINIRLWLSGCMLFMIEVLAIKYLNNIVEQSHRKVKGKMINVWVGSLGKVPNQRLL
ALNFGS

 

Blast result :
Comments
There is one copy of ISSpu17 in each of the 3 Shewanella putrefaciens genomes listed. The transposase encoded by ISSpu17 has 89% identity that encoded by ISSod8.
References
1] Romine, M.F. (2008) Direct submission.