ISSpu17
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009438 | ND | Shewanella putrefaciens | Shewanella putrefaciens 200 Shewanella putrefaciens CN-32 Shewanella putrefaciens W3-18-1 |
DNA section
IS Length : 818 bp
Ends
IR Length : 18/19
IRL : GGCTCTGTCGCAAACTGAGGAACGAGTTTATCATGAGCGATGCTCTCTTA
IRR : GGTTCTGTCGCAAACTGAGAGCTTGCAGCTAAGATTTGAGGGCGCAAGAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGATCAACT | CTATTTTTTA | 0 | |
CAGATCAACT | CTATTTTTTA | 0 | |
CAGATCAACT | CTATTTTTTA | 0 |
DNA sequence
GGCTCTGTCGCAAACTGAGGAACGAGTTTATCATGAGCGATGCTCTCTTAACTAACATCATCAATGTCGCTAAACTTTTCTGGACGCCATTTCCCAACAG
ATATCATCATGCAAGCCCTACGATATTACCTGGCCTATAAACTGAGTTACCGTGAAATTGAGGAGATGTTCGCTGAACGTAATATCCATTTTGACCACTC
AACACTGAACCGTTGGGTTATCAAATATGCGCCGCAACTCGAAGCCGTATTCAGGAAGAGAAAGCGTCGAGTATCAGGGTCGTGGCGAATGGACGAAACC
TACATAAAGATTAAAGGTCGCTGGGTTTACTATTATCGCGCCGTGGATAAATACGGTGCTATTATTGATTTTTATTTGAGTGAGACCCGTGATGAACCCG
CTGCTCGGGCGTTTTTCAATAAAGCTATCAACCAACATGGCTTACCTGAAAAGGTCGTCATTGATCAAAGTGGGGCGAATGCTGCGGCATTAGACACCAT
TAATATTCGTCTTTGGCTGTCTGGTTGCATGTTGTTTATGATTGAGGTTTTAGCCATAAAATATCTGAATAATATTGTTGAGCAAAGTCATCGAAAAGTG
AAAGGTAAAATGATCAATGTTTGGGTTGGAAGTCTTGGGAAGGTGCCGAATCAACGCTTGCTGGCGTTGAACTTTGGTTCATGATAAAGCAAGGGCAAAT
GAACACCACCGAAAAGATGACACCATGGGAACAATTTTATTCTTTAGCCGCATAATTATATCTGAGGGATCTTGCGCCCTCAAATCTTAGCTGCAAGCTC
TCAGTTTGCGACAGAACC
ATATCATCATGCAAGCCCTACGATATTACCTGGCCTATAAACTGAGTTACCGTGAAATTGAGGAGATGTTCGCTGAACGTAATATCCATTTTGACCACTC
AACACTGAACCGTTGGGTTATCAAATATGCGCCGCAACTCGAAGCCGTATTCAGGAAGAGAAAGCGTCGAGTATCAGGGTCGTGGCGAATGGACGAAACC
TACATAAAGATTAAAGGTCGCTGGGTTTACTATTATCGCGCCGTGGATAAATACGGTGCTATTATTGATTTTTATTTGAGTGAGACCCGTGATGAACCCG
CTGCTCGGGCGTTTTTCAATAAAGCTATCAACCAACATGGCTTACCTGAAAAGGTCGTCATTGATCAAAGTGGGGCGAATGCTGCGGCATTAGACACCAT
TAATATTCGTCTTTGGCTGTCTGGTTGCATGTTGTTTATGATTGAGGTTTTAGCCATAAAATATCTGAATAATATTGTTGAGCAAAGTCATCGAAAAGTG
AAAGGTAAAATGATCAATGTTTGGGTTGGAAGTCTTGGGAAGGTGCCGAATCAACGCTTGCTGGCGTTGAACTTTGGTTCATGATAAAGCAAGGGCAAAT
GAACACCACCGAAAAGATGACACCATGGGAACAATTTTATTCTTTAGCCGCATAATTATATCTGAGGGATCTTGCGCCCTCAAATCTTAGCTGCAAGCTC
TCAGTTTGCGACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
621 bp | 206 aa | 64 | 684 | + | No |
Chemistry : DDE
ORF sequence :
MSLNFSGRHFPTDIIMQALRYYLAYKLSYREIEEMFAERNIHFDHSTLNRWVIKYAPQLEAVFRKRKRRVSGSWRMDETYIKIKGRWVYYYRAVDKYGAI
IDFYLSETRDEPAARAFFNKAINQHGLPEKVVIDQSGANAAALDTINIRLWLSGCMLFMIEVLAIKYLNNIVEQSHRKVKGKMINVWVGSLGKVPNQRLL
ALNFGS
IDFYLSETRDEPAARAFFNKAINQHGLPEKVVIDQSGANAAALDTINIRLWLSGCMLFMIEVLAIKYLNNIVEQSHRKVKGKMINVWVGSLGKVPNQRLL
ALNFGS
Blast result :
Comments
There is one copy of ISSpu17 in each of the 3 Shewanella putrefaciens genomes listed. The transposase encoded by ISSpu17 has 89% identity that encoded by ISSod8.
References
1] Romine, M.F. (2008) Direct submission.