ISBj7_B
- Family IS66
- Group
Isoform Synonym(s) ISBj13
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004463 | ND | Bradyrhizobium japonicum | Bradyrhizobium japonicum USDA 110 |
DNA section
IS Length : 2865 bp
Ends
IR Length : 40/50
IRL : GTAAGCGGTGTGTCTCCCACACCTTGTTTGGCGTGAGCTGATCGGCAACA
IRR : GTAAGCGGCGTGTCTCCCGCACCTTGTTGCTGTTGAGCAGACCGGCAATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CACTCCGCGT | CTTAAATC | GCCGCATCCT | 8 |
DNA sequence
GTAAGCGGTGTGTCTCCCACACCTTGTTTGGCGTGAGCTGATCGGCAACATGCGAGCCGTCATATACAGTAAGGTTCGCATATATGGTTGACCATATAGT
TGACGCTTCAGAGCCACGGGGCCGGGTGGATATCCAGGTCGGAGCGGGGCGTCGGCGGCGGTGGAGCGCCGTGGTCAAGGGGCGGATCGTGGCGGAGTCA
TATGCGCCGGGCACAGTTGTGTCCGAGGTGGCGCGCCGGCACGACCTCTCACCGCAACACCTGTTTGCTTGGCGCAAGGCCGCGCGTGCCGGTCTGCTGA
GCTTGCCGGCGGAGGATGCACCGCTCTTCGTTCCGGTGGTGTCGGAGCTTCGCCCCGCTGGGATGTGCGTGGAAGCGGCAACGCGGAACGGGATAACGAT
CAGCATCGAGATTGGCGATGCGGTAGTTCGCGCAGCGGCGGGGGTCGATCCGACCTGGCTGCGCGATGTGCTGCGGGCCGTGAGGGCGACGACATGATCG
CGGCTTCGGCGGGCGTGAAGATCATGGTCGCGACGCGGCCGGTCGACTTTCGTAAAGGTGCCGATGGTCTCGCCGCGCTGGTGCGCGAGCAACTCCACCA
TGATCCGTTCGCGGGAACGATTTTCGTCTTCCGTTCAAAGCGAGCGGACCGTTTGAAGATTTTTGCCTGGGACGGGTCCGGGCTCGTGCTGCTGTGGAAG
CGGCTGGAGCATAGCGCGTTCCGCTGGCCGCCGATCAGCGATGGCGTGATGCGTTTGTCTGCCTCACAGCTCGCCGCGCTGATGGACGGCCTGGATTGGT
CGCGCCTGCATGCCCGCGACATTGGTCAGCCGAGCGCAACGTCGTGAACCCTGTGACCAATTGAATCATGTCGGCTGCAGTCTTCCACAAGGGCCCGCGA
ATCAGCTTGAGTACCGGGCGTGAGCGAGACCACGGATCAACTTCCGACCGATATCGAGGCGCTGCAGGCGCTGGTTGCGGCGGCACGCGCGGAGCGCGAC
GCGGCGATCGCAAAGTGCGACGCGGCGATCATCGAACGCGATCAGGCGCTGTCGCAAATGGATCGCCTTCAGCATCTCTTGCGCCAGCTGCAACGCGCGC
AGTTCGGTCGCCGCTCGGAGAAGCTCGACCCTGAGCAGTTGCAACTGGCGATCGAGGACATCGAGCAGGCCATTGCCGGCGATGAAGCGGTCCAGGACAG
GAAGGACACGGCAGGCGCACGCCAGCGTGCTGAACGGCGCCGCGCCAGCCGTGGTGCGCTTCCGGCCCATCTGCCGCATATCGACGTCACGATTGCCCCG
GAGGATACCAACTGTCCGTGCTGCCGCACGCCTCTGCATGTGATCGGTGAGGAGACCTCACGGCGGCTCGACGTCGTCCCGGCGCAGTTCCGCGTGATCG
TCACCCATCGTCCCAAATATGCCTGTCGGGCCTGCACGGATGGCGTGGTTCAGGCGCCGGCACCAGAGCGGCTGATCAAGGGCGGCTTGCCGACCGAGGC
GATGGTCGCCCATGTTCTGGTCGCCAAATTTGCCTGGCACCTGCCGCTGTATCGGCAGGCTCAGATGCTGCTGGCGCAGGGTATCGACATCAAGCGCTCG
GTTTTGGCGTTCTGGGTGGGCTATGCAGGCGCAGAGCTTCGTCCGCTCTGGCTCAGGCTGCGCGAGATCATTTTGACCGCGAACAAGATCGCGGTGGACG
AGACCACAGCGCCTGTGCTCGATCCCGGCCGCGGCCGCACCAAGAAAGGCTTCTTCTGGGCGATCGCGCGCGACGATCGGCCGTGGGGCGGGGCCGATCC
GCCGGCAGTGGCCTACACTTATGCGCCTGGTCGCGGCGCCGTCCACGCGCTCAAGCTGCTCGACGGTTATCGCGGCATCGTGCAATGCGACGGCTACACC
GTCTACAAGACCATTGCCGACACCGCGCCTGACGCGGCGATCACGCTCGCCTTCTGCTGGGCTCATCTGCGGCGGCGCTTCTTCGACGTTGTCCAGGACG
GTCCTGCCCCGATCGCGAGCGAAGCGCTCGAGCGTATTGCCGCTCTCTATGCGATCGAGAAGACGATCAGGGGCCGCAGCGCCGATGAGCGTCGTGCCAT
CCGCCAGGAGCGCAGCAAGCCGCTGGTGCTGGCGCTCAAGGCCTGGTTCGAGCAGCAACTCACCCGCGTCTCGGGCAAAGCGACAATCGCCGAGCACATC
CGTTACGCCTTGAACCACTGGGTTGGCCTGATGCGCTTCCTTGACGACGGCCGCATCGAGCTCGACACAAATATTGTCGAGCGAAGCATCCGTCCTCTTA
TCCTCAACCGCAAGAACGCACTGTTCGCGGGGCATGATGAGGGCGCGGAGAACTGGGCCTGCATCGCTTCGCTGATTGAGACCTGCAAGCTCTGCGGCGT
GGAGCCGCAGGCCTATCTGACCGACGTCCTCACCAGACTCGTCAACCTCTGGCCGGCCTCGCGTCTGGACGAACTCATGCCCTGGGCGTGGAGCGCCGAG
CAAGCTAAAAGCCTCGCCGCTTGATGAACTCGCTTCCTGGATCGCGACCGCTCCAGCCGGCCTCGTCGCCACCGGCTCCGTGTGTTCCGACAACGTCAAC
AACCCGTCGCGCACCGCCTTGCGCCAGGTCGACAAATGCTGCGGCGATAGACCGTGGCGCCGCGCGACGTCCGAGACGACCGCGCCGGGAACAAAGGATT
CCGCGACGATCCGTCCCTTGACCTCGCCACCCCAGCGCCGCCGAACCCGTAGCTCCGATGCGTCGACAACACGCTCGATCATATATGCAAACCGTCCTCT
TCAAGACGGAACGCATATTGCCGGTCTGCTCAACAGCAACAAGGTGCGGGAGACACGCCGCTTAC
TGACGCTTCAGAGCCACGGGGCCGGGTGGATATCCAGGTCGGAGCGGGGCGTCGGCGGCGGTGGAGCGCCGTGGTCAAGGGGCGGATCGTGGCGGAGTCA
TATGCGCCGGGCACAGTTGTGTCCGAGGTGGCGCGCCGGCACGACCTCTCACCGCAACACCTGTTTGCTTGGCGCAAGGCCGCGCGTGCCGGTCTGCTGA
GCTTGCCGGCGGAGGATGCACCGCTCTTCGTTCCGGTGGTGTCGGAGCTTCGCCCCGCTGGGATGTGCGTGGAAGCGGCAACGCGGAACGGGATAACGAT
CAGCATCGAGATTGGCGATGCGGTAGTTCGCGCAGCGGCGGGGGTCGATCCGACCTGGCTGCGCGATGTGCTGCGGGCCGTGAGGGCGACGACATGATCG
CGGCTTCGGCGGGCGTGAAGATCATGGTCGCGACGCGGCCGGTCGACTTTCGTAAAGGTGCCGATGGTCTCGCCGCGCTGGTGCGCGAGCAACTCCACCA
TGATCCGTTCGCGGGAACGATTTTCGTCTTCCGTTCAAAGCGAGCGGACCGTTTGAAGATTTTTGCCTGGGACGGGTCCGGGCTCGTGCTGCTGTGGAAG
CGGCTGGAGCATAGCGCGTTCCGCTGGCCGCCGATCAGCGATGGCGTGATGCGTTTGTCTGCCTCACAGCTCGCCGCGCTGATGGACGGCCTGGATTGGT
CGCGCCTGCATGCCCGCGACATTGGTCAGCCGAGCGCAACGTCGTGAACCCTGTGACCAATTGAATCATGTCGGCTGCAGTCTTCCACAAGGGCCCGCGA
ATCAGCTTGAGTACCGGGCGTGAGCGAGACCACGGATCAACTTCCGACCGATATCGAGGCGCTGCAGGCGCTGGTTGCGGCGGCACGCGCGGAGCGCGAC
GCGGCGATCGCAAAGTGCGACGCGGCGATCATCGAACGCGATCAGGCGCTGTCGCAAATGGATCGCCTTCAGCATCTCTTGCGCCAGCTGCAACGCGCGC
AGTTCGGTCGCCGCTCGGAGAAGCTCGACCCTGAGCAGTTGCAACTGGCGATCGAGGACATCGAGCAGGCCATTGCCGGCGATGAAGCGGTCCAGGACAG
GAAGGACACGGCAGGCGCACGCCAGCGTGCTGAACGGCGCCGCGCCAGCCGTGGTGCGCTTCCGGCCCATCTGCCGCATATCGACGTCACGATTGCCCCG
GAGGATACCAACTGTCCGTGCTGCCGCACGCCTCTGCATGTGATCGGTGAGGAGACCTCACGGCGGCTCGACGTCGTCCCGGCGCAGTTCCGCGTGATCG
TCACCCATCGTCCCAAATATGCCTGTCGGGCCTGCACGGATGGCGTGGTTCAGGCGCCGGCACCAGAGCGGCTGATCAAGGGCGGCTTGCCGACCGAGGC
GATGGTCGCCCATGTTCTGGTCGCCAAATTTGCCTGGCACCTGCCGCTGTATCGGCAGGCTCAGATGCTGCTGGCGCAGGGTATCGACATCAAGCGCTCG
GTTTTGGCGTTCTGGGTGGGCTATGCAGGCGCAGAGCTTCGTCCGCTCTGGCTCAGGCTGCGCGAGATCATTTTGACCGCGAACAAGATCGCGGTGGACG
AGACCACAGCGCCTGTGCTCGATCCCGGCCGCGGCCGCACCAAGAAAGGCTTCTTCTGGGCGATCGCGCGCGACGATCGGCCGTGGGGCGGGGCCGATCC
GCCGGCAGTGGCCTACACTTATGCGCCTGGTCGCGGCGCCGTCCACGCGCTCAAGCTGCTCGACGGTTATCGCGGCATCGTGCAATGCGACGGCTACACC
GTCTACAAGACCATTGCCGACACCGCGCCTGACGCGGCGATCACGCTCGCCTTCTGCTGGGCTCATCTGCGGCGGCGCTTCTTCGACGTTGTCCAGGACG
GTCCTGCCCCGATCGCGAGCGAAGCGCTCGAGCGTATTGCCGCTCTCTATGCGATCGAGAAGACGATCAGGGGCCGCAGCGCCGATGAGCGTCGTGCCAT
CCGCCAGGAGCGCAGCAAGCCGCTGGTGCTGGCGCTCAAGGCCTGGTTCGAGCAGCAACTCACCCGCGTCTCGGGCAAAGCGACAATCGCCGAGCACATC
CGTTACGCCTTGAACCACTGGGTTGGCCTGATGCGCTTCCTTGACGACGGCCGCATCGAGCTCGACACAAATATTGTCGAGCGAAGCATCCGTCCTCTTA
TCCTCAACCGCAAGAACGCACTGTTCGCGGGGCATGATGAGGGCGCGGAGAACTGGGCCTGCATCGCTTCGCTGATTGAGACCTGCAAGCTCTGCGGCGT
GGAGCCGCAGGCCTATCTGACCGACGTCCTCACCAGACTCGTCAACCTCTGGCCGGCCTCGCGTCTGGACGAACTCATGCCCTGGGCGTGGAGCGCCGAG
CAAGCTAAAAGCCTCGCCGCTTGATGAACTCGCTTCCTGGATCGCGACCGCTCCAGCCGGCCTCGTCGCCACCGGCTCCGTGTGTTCCGACAACGTCAAC
AACCCGTCGCGCACCGCCTTGCGCCAGGTCGACAAATGCTGCGGCGATAGACCGTGGCGCCGCGCGACGTCCGAGACGACCGCGCCGGGAACAAAGGATT
CCGCGACGATCCGTCCCTTGACCTCGCCACCCCAGCGCCGCCGAACCCGTAGCTCCGATGCGTCGACAACACGCTCGATCATATATGCAAACCGTCCTCT
TCAAGACGGAACGCATATTGCCGGTCTGCTCAACAGCAACAAGGTGCGGGAGACACGCCGCTTAC
Protein section
ORF number : 4
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
414 bp | 137 aa | 84 | 497 | + | No |
AG : IS66 TnpA
ORF sequence :
MVDHIVDASEPRGRVDIQVGAGRRRRWSAVVKGRIVAESYAPGTVVSEVARRHDLSPQHLFAWRKAARAGLLSLPAEDAPLFVPVVSELRPAGMCVEAAT
RNGITISIEIGDAVVRAAAGVDPTWLRDVLRAVRATT
RNGITISIEIGDAVVRAAAGVDPTWLRDVLRAVRATT
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
354 bp | 117 aa | 494 | 847 | + | No |
AG : IS66 TnpB
ORF sequence :
MIAASAGVKIMVATRPVDFRKGADGLAALVREQLHHDPFAGTIFVFRSKRADRLKIFAWDGSGLVLLWKRLEHSAFRWPPISDGVMRLSASQLAALMDGL
DWSRLHARDIGQPSATS
DWSRLHARDIGQPSATS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1605 bp | 534 aa | 920 | 2524 | + | No |
Chemistry : DDE
ORF sequence :
VSETTDQLPTDIEALQALVAAARAERDAAIAKCDAAIIERDQALSQMDRLQHLLRQLQRAQFGRRSEKLDPEQLQLAIEDIEQAIAGDEAVQDRKDTAGA
RQRAERRRASRGALPAHLPHIDVTIAPEDTNCPCCRTPLHVIGEETSRRLDVVPAQFRVIVTHRPKYACRACTDGVVQAPAPERLIKGGLPTEAMVAHVL
VAKFAWHLPLYRQAQMLLAQGIDIKRSVLAFWVGYAGAELRPLWLRLREIILTANKIAVDETTAPVLDPGRGRTKKGFFWAIARDDRPWGGADPPAVAYT
YAPGRGAVHALKLLDGYRGIVQCDGYTVYKTIADTAPDAAITLAFCWAHLRRRFFDVVQDGPAPIASEALERIAALYAIEKTIRGRSADERRAIRQERSK
PLVLALKAWFEQQLTRVSGKATIAEHIRYALNHWVGLMRFLDDGRIELDTNIVERSIRPLILNRKNALFAGHDEGAENWACIASLIETCKLCGVEPQAYL
TDVLTRLVNLWPASRLDELMPWAWSAEQAKSLAA
RQRAERRRASRGALPAHLPHIDVTIAPEDTNCPCCRTPLHVIGEETSRRLDVVPAQFRVIVTHRPKYACRACTDGVVQAPAPERLIKGGLPTEAMVAHVL
VAKFAWHLPLYRQAQMLLAQGIDIKRSVLAFWVGYAGAELRPLWLRLREIILTANKIAVDETTAPVLDPGRGRTKKGFFWAIARDDRPWGGADPPAVAYT
YAPGRGAVHALKLLDGYRGIVQCDGYTVYKTIADTAPDAAITLAFCWAHLRRRFFDVVQDGPAPIASEALERIAALYAIEKTIRGRSADERRAIRQERSK
PLVLALKAWFEQQLTRVSGKATIAEHIRYALNHWVGLMRFLDDGRIELDTNIVERSIRPLILNRKNALFAGHDEGAENWACIASLIETCKLCGVEPQAYL
TDVLTRLVNLWPASRLDELMPWAWSAEQAKSLAA
Blast result :ORF 4
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
291 bp | 96 aa | 2580 | 2870 | + | No |
Annotation : Hypothetical proteinDescription :
ORF sequence :
VCSDNVNNPSRTALRQVDKCCGDRPWRRATSETTAPGTKDSATIRPLTSPPQRRRTRSSDASTTRSIIYANRPLQDGTHIAGLLNSNKVRETRRLP
Blast result :
Comments
ISBj7_B is 55% (ORFA) aa similar to ISApr6,
83% aa (ORFB) to ISFpe1, 71% aa (ORFC : the transposase) to ISBrsp6.
ORFD is a passenger gene, with an unknown function.
83% aa (ORFB) to ISFpe1, 71% aa (ORFC : the transposase) to ISBrsp6.
ORFD is a passenger gene, with an unknown function.
References
1] Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (6), 225-256
2]Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S.(2002)DNA Res. 9 (6), 189-197
3]Kaneko,T. (2002) Direct submission GenBank.
4] ISfinder annotation (2008).
2]Kaneko,T., Nakamura,Y., Sato,S., Minamisawa,K., Uchiumi,T., Sasamoto,S., Watanabe,A., Idesawa,K., Iriguchi,M., Kawashima,K., Kohara,M., Matsumoto,M., Shimpo,S., Tsuruoka,H., Wada,T., Yamada,M. and Tabata,S.(2002)DNA Res. 9 (6), 189-197
3]Kaneko,T. (2002) Direct submission GenBank.
4] ISfinder annotation (2008).