ISNisp6

  • Family IS66
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAMY00000000 ND Nitrobacter sp.
Nitrobacter sp. Nb-311A
DNA section
IS Length : 2489 bp

Ends


IR Length : 15/22

IRL : GTAAGCGCTGTGGTGGCCCCACCTTTTTCTGACGTTGCTGATCAGCGATG
IRR : GTAAGCGGTGTTTTCAGGCCACTTCCCTGGTATCCAGCGCAGCGGTATAG

Insertion site


Left flankDirect repeatRight flankDR Length
TGCGCGCACCGCTCCTTGGTGGCCTCTC8

DNA sequence

GTAAGCGCTGTGGTGGCCCCACCTTTTTCTGACGTTGCTGATCAGCGATGGTGAAGATCTCTGAAGGGGAGATCGGCTTGTGTCTACGCTTGACCATACG
CTTAAGCCGCAGGATTTGCACCGGCTTGAGGTGATCACGGGCACTGGGCGTCGGCGCCGGTTCTCGGATGATGACAAGGCCCGCATCATCGAAGAGACAC
TTGTTCCGGGCGCTGTAGTTTCGGAGATTGCGCGCCGTCATGGGTTATCGCCGCAACAGTTGTTCGGCTGGCGCCGTCAAGCACGGCAGCCTGCATCGGC
GAGCACCGAGACGTCAGGGCCGCTTTTTGTTCCGGCGCTCGTGGAAGCTACATTGCCGGAGCGCGCGGTTCGCCGCCGCGGTCGCAACCGTGCGCTCGAT
GAGGATCGTGTTGCTGGAATCATCGAGGTTGAGATTGGCAGCGTGACGGTGCGCGTCGGCCGCGGTGCCGACGCCAGGACGGTCACGGCGGTGATCCGCG
CGCTAAAGGCCAGCGCGTGATCGGTCCGACCGGCGCAGTTCGGGTTATGATGGCGACCAAGCCGGTCGACTTCCGGAAGGGTGCCGAGGGTCTCGCGGCT
CTGGTGCGAGACGGGATGAAGACCGATCCGTTCTCCGGTGCTGTCTACGTGTTCCGCGCCAAGCGGGCGGACCGTGTGAAGCTGATCTTCTGGGATGGCA
CTGGTGTCTGCCTGTTTGCCAAGCGGCTCGAAGATGGCGCATTCCGCTGGCCCAATGTACAGGACGGCGTCATGCATTTGACTGCGGCGCAGCTCTCGGC
GTTATTGGAAGGTCTCGACTGGCGCCGTGTCCACGTCGCGCGCGAGACGACGGTGCCGACGCAGGCCAGTTGATCTGCGACACAGTGAATCATCTTCATC
GGATCGCTCGCGACGCATTGAGGCTCGTGATTTAATTGCTTCCATGACGGCTCTGGCAGACGCGCTTCCCGATGATCCCGGTACGCTGAAGGCGATGCTG
CTGGCGGAACGGGCACGCGCCGAACGGTTGGAACAAATCATCAGGGAGTTGCGCCGCCATCGCTTTGGCCGGCGCGCCGAGACGCTGCCGGAAGATCAAC
TTCTGCTCGGGCTCGAAGAGGTCGAGCAGGCTGCTGCGAGCAGCGAGGCGGCAGGTGAAGCGGTCGCTCCGGCCGAGCGAGCACGTCATGCCGTCAGGCA
CCGCATGAACCGCGGATCGCTTCCGGCACATCTGCCGCGCATCGAGATGGTGGCCGATATCGAGGACCACAGCTGTCCATGCTGTCGTAACGCGCTGCAT
CGGATTGGCGAAGACCGGAGCGAGAGACTCGACATGATCCCCGCGCAGCTGCGCGTGCTCGTCGTGCGCCGGCCGAAGTATGCCTGTCGGGCCTGCGAAG
AGGTGGTGGTGCAGGCTCCGGCGCCGGCACGGCTGATCGAGGGCGGATTGCCGACCGAAGCGACAGTGGCGCAGGTCCTCGTCTCCAAATACGCCGATCA
CTTGCCGCTCTACCGCCAATCCCAGATCTACGCCCGGCAGGGCATCATACTCGACCGCTCGACATTGGCCGACTGGGTCGGCCGCGCCGCCTGGTTGCTG
CGGCCGGTGCATGAGCGCCTGCTCGCTACTTTGAAGACCTCGACCAAGCTGTTCGCCGACGAGACCACGGCGCCGGTGCTCGATCCCGGCCGCGGGCGGA
CCAAGATCGGCCAGCTCTGGGCCTACGCACGCGATGATCGCCCTTGGGGCGGGGCCGATCCGCCGGGCGTAGCTTACCTCTATGCGCCCGACCGCAAGGC
GGAGCGGCCGATCGCTCATCTCGCCGGCTTCACCGGCATCCTGCAGGTAGACGGCTATGCCGGCTATCGCGCCCTCGCCGAACGCGGCGACGTGCGGCTC
GCGTTCTGCTGGGCCCACGTGCGCCGGCGCTTCTACGAGCTTGCCGTCGCCGGTCCGGCGCCGATCGCCAGCGAGGCGCTCAAACGCATTGTCGATCTCT
ATGCCGTCGAGACCCAATGCCGGGGCCGCTGCGCCGATGAGCGGCGCGCGCTTCGGCAGGAGAAGAGCCGCCCCATTCTGGAAGCCCTCGAACCCTGGCT
GCGTGCCAAGCTCGACCTGATCAGCCAGAAGACCAAACTCGCCGAGGCGATCCGCTACGCGCTGTCGCGCTGGGAGGGGCTCACGCGATACCTCAATGAC
GGCCGCATCGAGATCGATAGCAACATCGTCGAACGCTCAATCCGACCGATTGCGCTCAACCGCAAAAACGCGTTGTTCGCCGGCTCCGACGGCGGCGGCG
AGCACTGGGCCGTCATCGCCTCGCTGATCGAGACCTGCAAGCTTTGCAGCATCGAACCGCATAACTATCTGGCCGACGTCATCACCAGGATCGTCAACGG
CCATCCCAACAGCCAGATCAACGACCTGCTGCCTTGGGCCTATACCGCTGCGCTGGATACCAGGGAAGTGGCCTGAAAACACCGCTTAC
Protein section
ORF number : 3

 

ORF 1
LengthBeginEndStrandFusion ORF
441 bp146 aa80520+No
ORF function : Accessory Gene
AG : IS66 TnpA

ORF sequence :

VSTLDHTLKPQDLHRLEVITGTGRRRRFSDDDKARIIEETLVPGAVVSEIARRHGLSPQQLFGWRRQARQPASASTETSGPLFVPALVEATLPERAVRRR
GRNRALDEDRVAGIIEVEIGSVTVRVGRGADARTVTAVIRALKASA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
357 bp118 aa517873+No
ORF function : Accessory Gene
AG : IS66 TnpB

ORF sequence :

VIGPTGAVRVMMATKPVDFRKGAEGLAALVRDGMKTDPFSGAVYVFRAKRADRVKLIFWDGTGVCLFAKRLEDGAFRWPNVQDGVMHLTAAQLSALLEGL
DWRRVHVARETTVPTQAS

 

Blast result :
ORF 3
LengthBeginEndStrandFusion ORF
1533 bp510 aa9442476+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTALADALPDDPGTLKAMLLAERARAERLEQIIRELRRHRFGRRAETLPEDQLLLGLEEVEQAAASSEAAGEAVAPAERARHAVRHRMNRGSLPAHLPRI
EMVADIEDHSCPCCRNALHRIGEDRSERLDMIPAQLRVLVVRRPKYACRACEEVVVQAPAPARLIEGGLPTEATVAQVLVSKYADHLPLYRQSQIYARQG
IILDRSTLADWVGRAAWLLRPVHERLLATLKTSTKLFADETTAPVLDPGRGRTKIGQLWAYARDDRPWGGADPPGVAYLYAPDRKAERPIAHLAGFTGIL
QVDGYAGYRALAERGDVRLAFCWAHVRRRFYELAVAGPAPIASEALKRIVDLYAVETQCRGRCADERRALRQEKSRPILEALEPWLRAKLDLISQKTKLA
EAIRYALSRWEGLTRYLNDGRIEIDSNIVERSIRPIALNRKNALFAGSDGGGEHWAVIASLIETCKLCSIEPHNYLADVITRIVNGHPNSQINDLLPWAY
TAALDTREVA

 

Blast result :
Comments
orfA of ISNisp6 is 61% aa similar to ISFpe1 (orfA).
orfB of ISNisp6 is 85% aa similar to ISAzca2 (orfB).
orfC of ISNisp6 is 85% aa similar to ISXau4 (orfC).
References
1] ISfinder annotation (2008).
2] Waterbury,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A.,Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct Submission GenBank.