ISNisp6
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAMY00000000 | ND | Nitrobacter sp. | Nitrobacter sp. Nb-311A |
DNA section
IS Length : 2489 bp
Ends
IR Length : 15/22
IRL : GTAAGCGCTGTGGTGGCCCCACCTTTTTCTGACGTTGCTGATCAGCGATG
IRR : GTAAGCGGTGTTTTCAGGCCACTTCCCTGGTATCCAGCGCAGCGGTATAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGCGCGCACC | GCTCCTTG | GTGGCCTCTC | 8 |
DNA sequence
GTAAGCGCTGTGGTGGCCCCACCTTTTTCTGACGTTGCTGATCAGCGATGGTGAAGATCTCTGAAGGGGAGATCGGCTTGTGTCTACGCTTGACCATACG
CTTAAGCCGCAGGATTTGCACCGGCTTGAGGTGATCACGGGCACTGGGCGTCGGCGCCGGTTCTCGGATGATGACAAGGCCCGCATCATCGAAGAGACAC
TTGTTCCGGGCGCTGTAGTTTCGGAGATTGCGCGCCGTCATGGGTTATCGCCGCAACAGTTGTTCGGCTGGCGCCGTCAAGCACGGCAGCCTGCATCGGC
GAGCACCGAGACGTCAGGGCCGCTTTTTGTTCCGGCGCTCGTGGAAGCTACATTGCCGGAGCGCGCGGTTCGCCGCCGCGGTCGCAACCGTGCGCTCGAT
GAGGATCGTGTTGCTGGAATCATCGAGGTTGAGATTGGCAGCGTGACGGTGCGCGTCGGCCGCGGTGCCGACGCCAGGACGGTCACGGCGGTGATCCGCG
CGCTAAAGGCCAGCGCGTGATCGGTCCGACCGGCGCAGTTCGGGTTATGATGGCGACCAAGCCGGTCGACTTCCGGAAGGGTGCCGAGGGTCTCGCGGCT
CTGGTGCGAGACGGGATGAAGACCGATCCGTTCTCCGGTGCTGTCTACGTGTTCCGCGCCAAGCGGGCGGACCGTGTGAAGCTGATCTTCTGGGATGGCA
CTGGTGTCTGCCTGTTTGCCAAGCGGCTCGAAGATGGCGCATTCCGCTGGCCCAATGTACAGGACGGCGTCATGCATTTGACTGCGGCGCAGCTCTCGGC
GTTATTGGAAGGTCTCGACTGGCGCCGTGTCCACGTCGCGCGCGAGACGACGGTGCCGACGCAGGCCAGTTGATCTGCGACACAGTGAATCATCTTCATC
GGATCGCTCGCGACGCATTGAGGCTCGTGATTTAATTGCTTCCATGACGGCTCTGGCAGACGCGCTTCCCGATGATCCCGGTACGCTGAAGGCGATGCTG
CTGGCGGAACGGGCACGCGCCGAACGGTTGGAACAAATCATCAGGGAGTTGCGCCGCCATCGCTTTGGCCGGCGCGCCGAGACGCTGCCGGAAGATCAAC
TTCTGCTCGGGCTCGAAGAGGTCGAGCAGGCTGCTGCGAGCAGCGAGGCGGCAGGTGAAGCGGTCGCTCCGGCCGAGCGAGCACGTCATGCCGTCAGGCA
CCGCATGAACCGCGGATCGCTTCCGGCACATCTGCCGCGCATCGAGATGGTGGCCGATATCGAGGACCACAGCTGTCCATGCTGTCGTAACGCGCTGCAT
CGGATTGGCGAAGACCGGAGCGAGAGACTCGACATGATCCCCGCGCAGCTGCGCGTGCTCGTCGTGCGCCGGCCGAAGTATGCCTGTCGGGCCTGCGAAG
AGGTGGTGGTGCAGGCTCCGGCGCCGGCACGGCTGATCGAGGGCGGATTGCCGACCGAAGCGACAGTGGCGCAGGTCCTCGTCTCCAAATACGCCGATCA
CTTGCCGCTCTACCGCCAATCCCAGATCTACGCCCGGCAGGGCATCATACTCGACCGCTCGACATTGGCCGACTGGGTCGGCCGCGCCGCCTGGTTGCTG
CGGCCGGTGCATGAGCGCCTGCTCGCTACTTTGAAGACCTCGACCAAGCTGTTCGCCGACGAGACCACGGCGCCGGTGCTCGATCCCGGCCGCGGGCGGA
CCAAGATCGGCCAGCTCTGGGCCTACGCACGCGATGATCGCCCTTGGGGCGGGGCCGATCCGCCGGGCGTAGCTTACCTCTATGCGCCCGACCGCAAGGC
GGAGCGGCCGATCGCTCATCTCGCCGGCTTCACCGGCATCCTGCAGGTAGACGGCTATGCCGGCTATCGCGCCCTCGCCGAACGCGGCGACGTGCGGCTC
GCGTTCTGCTGGGCCCACGTGCGCCGGCGCTTCTACGAGCTTGCCGTCGCCGGTCCGGCGCCGATCGCCAGCGAGGCGCTCAAACGCATTGTCGATCTCT
ATGCCGTCGAGACCCAATGCCGGGGCCGCTGCGCCGATGAGCGGCGCGCGCTTCGGCAGGAGAAGAGCCGCCCCATTCTGGAAGCCCTCGAACCCTGGCT
GCGTGCCAAGCTCGACCTGATCAGCCAGAAGACCAAACTCGCCGAGGCGATCCGCTACGCGCTGTCGCGCTGGGAGGGGCTCACGCGATACCTCAATGAC
GGCCGCATCGAGATCGATAGCAACATCGTCGAACGCTCAATCCGACCGATTGCGCTCAACCGCAAAAACGCGTTGTTCGCCGGCTCCGACGGCGGCGGCG
AGCACTGGGCCGTCATCGCCTCGCTGATCGAGACCTGCAAGCTTTGCAGCATCGAACCGCATAACTATCTGGCCGACGTCATCACCAGGATCGTCAACGG
CCATCCCAACAGCCAGATCAACGACCTGCTGCCTTGGGCCTATACCGCTGCGCTGGATACCAGGGAAGTGGCCTGAAAACACCGCTTAC
CTTAAGCCGCAGGATTTGCACCGGCTTGAGGTGATCACGGGCACTGGGCGTCGGCGCCGGTTCTCGGATGATGACAAGGCCCGCATCATCGAAGAGACAC
TTGTTCCGGGCGCTGTAGTTTCGGAGATTGCGCGCCGTCATGGGTTATCGCCGCAACAGTTGTTCGGCTGGCGCCGTCAAGCACGGCAGCCTGCATCGGC
GAGCACCGAGACGTCAGGGCCGCTTTTTGTTCCGGCGCTCGTGGAAGCTACATTGCCGGAGCGCGCGGTTCGCCGCCGCGGTCGCAACCGTGCGCTCGAT
GAGGATCGTGTTGCTGGAATCATCGAGGTTGAGATTGGCAGCGTGACGGTGCGCGTCGGCCGCGGTGCCGACGCCAGGACGGTCACGGCGGTGATCCGCG
CGCTAAAGGCCAGCGCGTGATCGGTCCGACCGGCGCAGTTCGGGTTATGATGGCGACCAAGCCGGTCGACTTCCGGAAGGGTGCCGAGGGTCTCGCGGCT
CTGGTGCGAGACGGGATGAAGACCGATCCGTTCTCCGGTGCTGTCTACGTGTTCCGCGCCAAGCGGGCGGACCGTGTGAAGCTGATCTTCTGGGATGGCA
CTGGTGTCTGCCTGTTTGCCAAGCGGCTCGAAGATGGCGCATTCCGCTGGCCCAATGTACAGGACGGCGTCATGCATTTGACTGCGGCGCAGCTCTCGGC
GTTATTGGAAGGTCTCGACTGGCGCCGTGTCCACGTCGCGCGCGAGACGACGGTGCCGACGCAGGCCAGTTGATCTGCGACACAGTGAATCATCTTCATC
GGATCGCTCGCGACGCATTGAGGCTCGTGATTTAATTGCTTCCATGACGGCTCTGGCAGACGCGCTTCCCGATGATCCCGGTACGCTGAAGGCGATGCTG
CTGGCGGAACGGGCACGCGCCGAACGGTTGGAACAAATCATCAGGGAGTTGCGCCGCCATCGCTTTGGCCGGCGCGCCGAGACGCTGCCGGAAGATCAAC
TTCTGCTCGGGCTCGAAGAGGTCGAGCAGGCTGCTGCGAGCAGCGAGGCGGCAGGTGAAGCGGTCGCTCCGGCCGAGCGAGCACGTCATGCCGTCAGGCA
CCGCATGAACCGCGGATCGCTTCCGGCACATCTGCCGCGCATCGAGATGGTGGCCGATATCGAGGACCACAGCTGTCCATGCTGTCGTAACGCGCTGCAT
CGGATTGGCGAAGACCGGAGCGAGAGACTCGACATGATCCCCGCGCAGCTGCGCGTGCTCGTCGTGCGCCGGCCGAAGTATGCCTGTCGGGCCTGCGAAG
AGGTGGTGGTGCAGGCTCCGGCGCCGGCACGGCTGATCGAGGGCGGATTGCCGACCGAAGCGACAGTGGCGCAGGTCCTCGTCTCCAAATACGCCGATCA
CTTGCCGCTCTACCGCCAATCCCAGATCTACGCCCGGCAGGGCATCATACTCGACCGCTCGACATTGGCCGACTGGGTCGGCCGCGCCGCCTGGTTGCTG
CGGCCGGTGCATGAGCGCCTGCTCGCTACTTTGAAGACCTCGACCAAGCTGTTCGCCGACGAGACCACGGCGCCGGTGCTCGATCCCGGCCGCGGGCGGA
CCAAGATCGGCCAGCTCTGGGCCTACGCACGCGATGATCGCCCTTGGGGCGGGGCCGATCCGCCGGGCGTAGCTTACCTCTATGCGCCCGACCGCAAGGC
GGAGCGGCCGATCGCTCATCTCGCCGGCTTCACCGGCATCCTGCAGGTAGACGGCTATGCCGGCTATCGCGCCCTCGCCGAACGCGGCGACGTGCGGCTC
GCGTTCTGCTGGGCCCACGTGCGCCGGCGCTTCTACGAGCTTGCCGTCGCCGGTCCGGCGCCGATCGCCAGCGAGGCGCTCAAACGCATTGTCGATCTCT
ATGCCGTCGAGACCCAATGCCGGGGCCGCTGCGCCGATGAGCGGCGCGCGCTTCGGCAGGAGAAGAGCCGCCCCATTCTGGAAGCCCTCGAACCCTGGCT
GCGTGCCAAGCTCGACCTGATCAGCCAGAAGACCAAACTCGCCGAGGCGATCCGCTACGCGCTGTCGCGCTGGGAGGGGCTCACGCGATACCTCAATGAC
GGCCGCATCGAGATCGATAGCAACATCGTCGAACGCTCAATCCGACCGATTGCGCTCAACCGCAAAAACGCGTTGTTCGCCGGCTCCGACGGCGGCGGCG
AGCACTGGGCCGTCATCGCCTCGCTGATCGAGACCTGCAAGCTTTGCAGCATCGAACCGCATAACTATCTGGCCGACGTCATCACCAGGATCGTCAACGG
CCATCCCAACAGCCAGATCAACGACCTGCTGCCTTGGGCCTATACCGCTGCGCTGGATACCAGGGAAGTGGCCTGAAAACACCGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
441 bp | 146 aa | 80 | 520 | + | No |
AG : IS66 TnpA
ORF sequence :
VSTLDHTLKPQDLHRLEVITGTGRRRRFSDDDKARIIEETLVPGAVVSEIARRHGLSPQQLFGWRRQARQPASASTETSGPLFVPALVEATLPERAVRRR
GRNRALDEDRVAGIIEVEIGSVTVRVGRGADARTVTAVIRALKASA
GRNRALDEDRVAGIIEVEIGSVTVRVGRGADARTVTAVIRALKASA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
357 bp | 118 aa | 517 | 873 | + | No |
AG : IS66 TnpB
ORF sequence :
VIGPTGAVRVMMATKPVDFRKGAEGLAALVRDGMKTDPFSGAVYVFRAKRADRVKLIFWDGTGVCLFAKRLEDGAFRWPNVQDGVMHLTAAQLSALLEGL
DWRRVHVARETTVPTQAS
DWRRVHVARETTVPTQAS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1533 bp | 510 aa | 944 | 2476 | + | No |
Chemistry : DDE
ORF sequence :
MTALADALPDDPGTLKAMLLAERARAERLEQIIRELRRHRFGRRAETLPEDQLLLGLEEVEQAAASSEAAGEAVAPAERARHAVRHRMNRGSLPAHLPRI
EMVADIEDHSCPCCRNALHRIGEDRSERLDMIPAQLRVLVVRRPKYACRACEEVVVQAPAPARLIEGGLPTEATVAQVLVSKYADHLPLYRQSQIYARQG
IILDRSTLADWVGRAAWLLRPVHERLLATLKTSTKLFADETTAPVLDPGRGRTKIGQLWAYARDDRPWGGADPPGVAYLYAPDRKAERPIAHLAGFTGIL
QVDGYAGYRALAERGDVRLAFCWAHVRRRFYELAVAGPAPIASEALKRIVDLYAVETQCRGRCADERRALRQEKSRPILEALEPWLRAKLDLISQKTKLA
EAIRYALSRWEGLTRYLNDGRIEIDSNIVERSIRPIALNRKNALFAGSDGGGEHWAVIASLIETCKLCSIEPHNYLADVITRIVNGHPNSQINDLLPWAY
TAALDTREVA
EMVADIEDHSCPCCRNALHRIGEDRSERLDMIPAQLRVLVVRRPKYACRACEEVVVQAPAPARLIEGGLPTEATVAQVLVSKYADHLPLYRQSQIYARQG
IILDRSTLADWVGRAAWLLRPVHERLLATLKTSTKLFADETTAPVLDPGRGRTKIGQLWAYARDDRPWGGADPPGVAYLYAPDRKAERPIAHLAGFTGIL
QVDGYAGYRALAERGDVRLAFCWAHVRRRFYELAVAGPAPIASEALKRIVDLYAVETQCRGRCADERRALRQEKSRPILEALEPWLRAKLDLISQKTKLA
EAIRYALSRWEGLTRYLNDGRIEIDSNIVERSIRPIALNRKNALFAGSDGGGEHWAVIASLIETCKLCSIEPHNYLADVITRIVNGHPNSQINDLLPWAY
TAALDTREVA
Blast result :
Comments
orfA of ISNisp6 is 61% aa similar to ISFpe1 (orfA).
orfB of ISNisp6 is 85% aa similar to ISAzca2 (orfB).
orfC of ISNisp6 is 85% aa similar to ISXau4 (orfC).
orfB of ISNisp6 is 85% aa similar to ISAzca2 (orfB).
orfC of ISNisp6 is 85% aa similar to ISXau4 (orfC).
References
1] ISfinder annotation (2008).
2] Waterbury,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A.,Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct Submission GenBank.
2] Waterbury,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A.,Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct Submission GenBank.