ISMlu1

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Micrococcus luteus
Micrococcus luteus
DNA section
IS Length : 1413 bp

Ends


IR Length : 21/26

IRL : GTCCCGCATAGTGGTGTAGCGCACGGTGACTGGGCACGTCGTTCCGGATG
IRR : GTCCCGAGTAGTGGTGTAACGCTCTGATCCTCCATTGGTGCTGTTAGGCG

Insertion site


Left flankDirect repeatRight flankDR Length
CAGCGCCACCGATAGTTGACCCCACCGATTCGG4

DNA sequence

GTCCCGCATAGTGGTGTAGCGCACGGTGACTGGGCACGTCGTTCCGGATGTGGACGCGGCCACCGTGTGATCCTTCGAGTCAACCTTCCACAGAATCCTC
GAACGGAGTCATCACGATGACCGCTCCTCATATTGTCGACCCTGCCGGCCTGCTCGGCGAAGCCCTGTCCGAAGCATCCCCGGATTTGATGCGTTCGTTG
CTGCAGACCGTGATCAACTCCCTGCTCTCCGCTGACGCCGACGCGGTGGTCGGCGCCGAATGGGGTAAACCCACCCCGGGCCGAGCTACCCAGCGCAACG
GGTACCGGCACCGGGACCTGGACACCCGGGTCGGGACCCTGGACGTGGCGATCCCCAAACTCAGGTCGGGCACGTACTTCCCGGAGTGGCTGCTCGAGCG
CCGCAAAAGGGCCGAATCCGCGCTGATCACGGTGGTCGCCGACTGCTACCTGGCCGGGGTCTCGACCCGGCGGATGGACAAACTGGTCAAGACCCTCGGG
ATCAACGCGCTGTCGAAGTCCCAGGTCTCGCGGATGGCCACCGAGCTGGACGAGCAGGTCGAGTCCTTCCGTCATCGCCCGCTCGGGGAGGCTGGGCCGT
TCACGTTCGTGGCCGCCGACGCGCTGAGCATGAAGGTCCGCGAGGGCGGCCGGGTGGTCAACGCCGTGGTGCTGCTGGCCACCGGGGTCAATGGTGACGG
CCACCGCGAGGTCCTCGGCCTGCGGGTGGCCACCTCGGAGACGGGGTCGGCGTGGAACGAGTTCTTCGCCGACCTGGTGGCCCGGGGCCTGACCGGAGTC
CGCCTGGTCACTTCCGACGCCCACACCGGGCTCAAGGACGCCATCGCCGCGAACCTGCCCGGAGCGACCTGGCAGCGGTGCCGGACCCACTACGCGGCGA
ACCTGATGGGCATCACCCCCAAGTCCATGTGGCCGGCCGTGAAGGCCATGCTGCACTCGGTGTATGACCAGCCCGACGCCGCCAGCGTGGACGCCCAGTT
CGACCGGCTGCTGGACTACGTCAGCGAAAAGCTGCCCGCGGTGGCCGAACACCTCGATGGTGCCCGGGCGGACATCCTGGCGTTCACCACGTTCCCCAAG
GACGTGTGGACCCAGATCTGGTCGAACAACCCGGCCGAACGGCTCAACCGCGAGATCCGGCGTCGCACCGACGCCGTGGGCATCTTCCCGAACCGGGCAG
CGATCGTGCGCCTGGTCGGGGCGGTGCTGGCTGAGCAGACCGATGAGTGGGCCGAGGGCCGCCGCTACCTCGGCCTCGAGGTGTTGGCCCGCTGCCGCCT
CACCACCGTGGACGACACCGGGAACGAGGTGAACGCCGAACCGGAAACCACCCTCGAACTCAGCGCCTAACAGCACCAATGGAGGATCAGAGCGTTACAC
CACTACTCGGGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1254 bp417 aa1171370+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTAPHIVDPAGLLGEALSEASPDLMRSLLQTVINSLLSADADAVVGAEWGKPTPGRATQRNGYRHRDLDTRVGTLDVAIPKLRSGTYFPEWLLERRKRAE
SALITVVADCYLAGVSTRRMDKLVKTLGINALSKSQVSRMATELDEQVESFRHRPLGEAGPFTFVAADALSMKVREGGRVVNAVVLLATGVNGDGHREVL
GLRVATSETGSAWNEFFADLVARGLTGVRLVTSDAHTGLKDAIAANLPGATWQRCRTHYAANLMGITPKSMWPAVKAMLHSVYDQPDAASVDAQFDRLLD
YVSEKLPAVAEHLDGARADILAFTTFPKDVWTQIWSNNPAERLNREIRRRTDAVGIFPNRAAIVRLVGAVLAEQTDEWAEGRRYLGLEVLARCRLTTVDD
TGNEVNAEPETTLELSA

 

Blast result :
Comments
ISMlu1 is 92% aa smilar to IS1601.
References
1] ISfinder annotation (2008)