ISGdi12

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Gluconacetobacter diazotrophicus
Gluconacetobacter diazotrophicus
DNA section
IS Length : 1419 bp

Ends


IR Length : 22

IRL : CTAGCACTACAGTTGCGTTTTTCTGAGAGTTCTGAATCTATGGGTAACCA
IRR : CTAGCACTACAGTTGCGTTTTTGCCCTGAGGCGCGAGAGGTATGCTGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
GGTCTACCGGTGCCTAGCACTAC3
TGCCTTGACAGGCCTAGCACTAC3
GGGCGCGCGGGCACTAGCACTAC3
GCGGCCAGATAGGCTAGCACTAC3

DNA sequence

CTAGCACTACAGTTGCGTTTTTCTGAGAGTTCTGAATCTATGGGTAACCATGATTCTGAACGAGATGAATAGCGCAGCTTCGGTCGAGGATGTTCTGGCT
CTGACGCTGGAGGCGCTGCGGGACGCCAAGGAGCGAATGCGCCCGGTATTCGGCCAGGAGCGGGTGGCGGCATCGGCAGGCCGGTTTCTGGAAACACTAC
TGGGCAACGAGCCGCGCAAGACCGGCTGGATGCGGGCTGAAGCTGCGGGCGATCCGGGGCCATGGCGACAGCAGGCCCTGCTTGGACGCGGGCATTGGGA
CGCCGATGCATTGCGGGACGTCGTGCGCGATCATGTTGTCGAGCATCTGGGGGATGCCGACGCGGTACTGGTGGTCGACGAGACTGGTTTCCTCAAGAAG
GGCTCTGCATCATGCGGAGTGGGACGGCAATATACCGGGTCTGCCGGCAAGATCACGAATTGCCAGATTGGCGTGTTCGCAGCCTATGTCTCTGACAAGG
GGCATGCTTTTCTCGACCGGGCTTTGTATCTGCCGAAAGCCTGGACTGAAAAGCCTGAGCGGTTGGCGGCGGCCCATGTGCCGGGCGATGTCACGTTTGC
CAGCAAACCGTCCCTGGCCACCGCGATGATCGGCCGGGCGCTTGCGGCCGATGTGCCGTTCCGGTGGGTGGCTGGCGACAGCGTCTATGGCGTCGGTGAA
CTGGAAATGGCTTTGCGCCGCGCAGGCAAAGGCTTCGTCCTTGGCGTCAACGCCAATCACTGGTTCCATTCCTGGCGTCCGGACATCCACTGGTCCGGCG
AGGCGCGCGAAATCATCAAGACCCTGCCGGACGAGACCTGGGTCCGCTGTTCCGCCGGACGCGGCACCAAGGGCGAACGACTGTATGACTGGCTGTATTG
CCCGATGGCCGATCTCGAGGCCTCCGAATATTCAGGTATCTCAACCGGGATATGGACCCGTGGGCTGCTGGTCCGGCGTAATCCCTCCGATGGCGATCTG
GCATATTTCACGACCTGGTGCCCTCAGGGAACACCGCTTGAGATCTTGGTGCGTGTCGAGGGCACGCGCTGGCGAATCGAGGAAGGGTTCGAGACCGCCA
AGAACGAATTCGGACTCGACCATAATGAAACCCGTTCCTGGCATGGCTGGCACCGTCACGTCTCGTTGGTCATGCTGGCTTACGCCATGATGGCCGCTGT
GCGGTCCCAGGCCAACGCCATGGCGCTCAAAAAAAGCCAGTTGCACAAACGCGGCCGCTCATCCGCTGGTCAATCCAGGAAATCCGCCGCCTCGCCGTGA
AAATTACCCGAAGCCGCGCCTCCATCGAGCATATCCTCCGATGGTCGTTCTTTCGACGTGCTCATCAGGCCGCAGCATACCTCTCGCGCCTCAGGGCAAA
AACGCAACTGTAGTGCTAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1251 bp416 aa501300+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MILNEMNSAASVEDVLALTLEALRDAKERMRPVFGQERVAASAGRFLETLLGNEPRKTGWMRAEAAGDPGPWRQQALLGRGHWDADALRDVVRDHVVEHL
GDADAVLVVDETGFLKKGSASCGVGRQYTGSAGKITNCQIGVFAAYVSDKGHAFLDRALYLPKAWTEKPERLAAAHVPGDVTFASKPSLATAMIGRALAA
DVPFRWVAGDSVYGVGELEMALRRAGKGFVLGVNANHWFHSWRPDIHWSGEAREIIKTLPDETWVRCSAGRGTKGERLYDWLYCPMADLEASEYSGISTG
IWTRGLLVRRNPSDGDLAYFTTWCPQGTPLEILVRVEGTRWRIEEGFETAKNEFGLDHNETRSWHGWHRHVSLVMLAYAMMAAVRSQANAMALKKSQLHK
RGRSSAGQSRKSAASP

 

Blast result :
Comments
ISGdi12 is 81% aa similar to IS1452.
References
1] Miriam Land (2008) Direct submission.