ISGdi12
- Family IS701
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Gluconacetobacter diazotrophicus | Gluconacetobacter diazotrophicus |
DNA section
IS Length : 1419 bp
Ends
IR Length : 22
IRL : CTAGCACTACAGTTGCGTTTTTCTGAGAGTTCTGAATCTATGGGTAACCA
IRR : CTAGCACTACAGTTGCGTTTTTGCCCTGAGGCGCGAGAGGTATGCTGCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGTCTACCGG | TGC | CTAGCACTAC | 3 |
TGCCTTGACA | GGC | CTAGCACTAC | 3 |
GGGCGCGCGG | GCA | CTAGCACTAC | 3 |
GCGGCCAGAT | AGG | CTAGCACTAC | 3 |
DNA sequence
CTAGCACTACAGTTGCGTTTTTCTGAGAGTTCTGAATCTATGGGTAACCATGATTCTGAACGAGATGAATAGCGCAGCTTCGGTCGAGGATGTTCTGGCT
CTGACGCTGGAGGCGCTGCGGGACGCCAAGGAGCGAATGCGCCCGGTATTCGGCCAGGAGCGGGTGGCGGCATCGGCAGGCCGGTTTCTGGAAACACTAC
TGGGCAACGAGCCGCGCAAGACCGGCTGGATGCGGGCTGAAGCTGCGGGCGATCCGGGGCCATGGCGACAGCAGGCCCTGCTTGGACGCGGGCATTGGGA
CGCCGATGCATTGCGGGACGTCGTGCGCGATCATGTTGTCGAGCATCTGGGGGATGCCGACGCGGTACTGGTGGTCGACGAGACTGGTTTCCTCAAGAAG
GGCTCTGCATCATGCGGAGTGGGACGGCAATATACCGGGTCTGCCGGCAAGATCACGAATTGCCAGATTGGCGTGTTCGCAGCCTATGTCTCTGACAAGG
GGCATGCTTTTCTCGACCGGGCTTTGTATCTGCCGAAAGCCTGGACTGAAAAGCCTGAGCGGTTGGCGGCGGCCCATGTGCCGGGCGATGTCACGTTTGC
CAGCAAACCGTCCCTGGCCACCGCGATGATCGGCCGGGCGCTTGCGGCCGATGTGCCGTTCCGGTGGGTGGCTGGCGACAGCGTCTATGGCGTCGGTGAA
CTGGAAATGGCTTTGCGCCGCGCAGGCAAAGGCTTCGTCCTTGGCGTCAACGCCAATCACTGGTTCCATTCCTGGCGTCCGGACATCCACTGGTCCGGCG
AGGCGCGCGAAATCATCAAGACCCTGCCGGACGAGACCTGGGTCCGCTGTTCCGCCGGACGCGGCACCAAGGGCGAACGACTGTATGACTGGCTGTATTG
CCCGATGGCCGATCTCGAGGCCTCCGAATATTCAGGTATCTCAACCGGGATATGGACCCGTGGGCTGCTGGTCCGGCGTAATCCCTCCGATGGCGATCTG
GCATATTTCACGACCTGGTGCCCTCAGGGAACACCGCTTGAGATCTTGGTGCGTGTCGAGGGCACGCGCTGGCGAATCGAGGAAGGGTTCGAGACCGCCA
AGAACGAATTCGGACTCGACCATAATGAAACCCGTTCCTGGCATGGCTGGCACCGTCACGTCTCGTTGGTCATGCTGGCTTACGCCATGATGGCCGCTGT
GCGGTCCCAGGCCAACGCCATGGCGCTCAAAAAAAGCCAGTTGCACAAACGCGGCCGCTCATCCGCTGGTCAATCCAGGAAATCCGCCGCCTCGCCGTGA
AAATTACCCGAAGCCGCGCCTCCATCGAGCATATCCTCCGATGGTCGTTCTTTCGACGTGCTCATCAGGCCGCAGCATACCTCTCGCGCCTCAGGGCAAA
AACGCAACTGTAGTGCTAG
CTGACGCTGGAGGCGCTGCGGGACGCCAAGGAGCGAATGCGCCCGGTATTCGGCCAGGAGCGGGTGGCGGCATCGGCAGGCCGGTTTCTGGAAACACTAC
TGGGCAACGAGCCGCGCAAGACCGGCTGGATGCGGGCTGAAGCTGCGGGCGATCCGGGGCCATGGCGACAGCAGGCCCTGCTTGGACGCGGGCATTGGGA
CGCCGATGCATTGCGGGACGTCGTGCGCGATCATGTTGTCGAGCATCTGGGGGATGCCGACGCGGTACTGGTGGTCGACGAGACTGGTTTCCTCAAGAAG
GGCTCTGCATCATGCGGAGTGGGACGGCAATATACCGGGTCTGCCGGCAAGATCACGAATTGCCAGATTGGCGTGTTCGCAGCCTATGTCTCTGACAAGG
GGCATGCTTTTCTCGACCGGGCTTTGTATCTGCCGAAAGCCTGGACTGAAAAGCCTGAGCGGTTGGCGGCGGCCCATGTGCCGGGCGATGTCACGTTTGC
CAGCAAACCGTCCCTGGCCACCGCGATGATCGGCCGGGCGCTTGCGGCCGATGTGCCGTTCCGGTGGGTGGCTGGCGACAGCGTCTATGGCGTCGGTGAA
CTGGAAATGGCTTTGCGCCGCGCAGGCAAAGGCTTCGTCCTTGGCGTCAACGCCAATCACTGGTTCCATTCCTGGCGTCCGGACATCCACTGGTCCGGCG
AGGCGCGCGAAATCATCAAGACCCTGCCGGACGAGACCTGGGTCCGCTGTTCCGCCGGACGCGGCACCAAGGGCGAACGACTGTATGACTGGCTGTATTG
CCCGATGGCCGATCTCGAGGCCTCCGAATATTCAGGTATCTCAACCGGGATATGGACCCGTGGGCTGCTGGTCCGGCGTAATCCCTCCGATGGCGATCTG
GCATATTTCACGACCTGGTGCCCTCAGGGAACACCGCTTGAGATCTTGGTGCGTGTCGAGGGCACGCGCTGGCGAATCGAGGAAGGGTTCGAGACCGCCA
AGAACGAATTCGGACTCGACCATAATGAAACCCGTTCCTGGCATGGCTGGCACCGTCACGTCTCGTTGGTCATGCTGGCTTACGCCATGATGGCCGCTGT
GCGGTCCCAGGCCAACGCCATGGCGCTCAAAAAAAGCCAGTTGCACAAACGCGGCCGCTCATCCGCTGGTCAATCCAGGAAATCCGCCGCCTCGCCGTGA
AAATTACCCGAAGCCGCGCCTCCATCGAGCATATCCTCCGATGGTCGTTCTTTCGACGTGCTCATCAGGCCGCAGCATACCTCTCGCGCCTCAGGGCAAA
AACGCAACTGTAGTGCTAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 50 | 1300 | + | No |
Chemistry : DDE
ORF sequence :
MILNEMNSAASVEDVLALTLEALRDAKERMRPVFGQERVAASAGRFLETLLGNEPRKTGWMRAEAAGDPGPWRQQALLGRGHWDADALRDVVRDHVVEHL
GDADAVLVVDETGFLKKGSASCGVGRQYTGSAGKITNCQIGVFAAYVSDKGHAFLDRALYLPKAWTEKPERLAAAHVPGDVTFASKPSLATAMIGRALAA
DVPFRWVAGDSVYGVGELEMALRRAGKGFVLGVNANHWFHSWRPDIHWSGEAREIIKTLPDETWVRCSAGRGTKGERLYDWLYCPMADLEASEYSGISTG
IWTRGLLVRRNPSDGDLAYFTTWCPQGTPLEILVRVEGTRWRIEEGFETAKNEFGLDHNETRSWHGWHRHVSLVMLAYAMMAAVRSQANAMALKKSQLHK
RGRSSAGQSRKSAASP
GDADAVLVVDETGFLKKGSASCGVGRQYTGSAGKITNCQIGVFAAYVSDKGHAFLDRALYLPKAWTEKPERLAAAHVPGDVTFASKPSLATAMIGRALAA
DVPFRWVAGDSVYGVGELEMALRRAGKGFVLGVNANHWFHSWRPDIHWSGEAREIIKTLPDETWVRCSAGRGTKGERLYDWLYCPMADLEASEYSGISTG
IWTRGLLVRRNPSDGDLAYFTTWCPQGTPLEILVRVEGTRWRIEEGFETAKNEFGLDHNETRSWHGWHRHVSLVMLAYAMMAAVRSQANAMALKKSQLHK
RGRSSAGQSRKSAASP
Blast result :
Comments
ISGdi12 is 81% aa similar to IS1452.
References
1] Miriam Land (2008) Direct submission.