ISGdi13
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Gluconacetobacter diazotrophicus | Gluconacetobacter diazotrophicus |
DNA section
IS Length : 1452 bp
Ends
IR Length : 17/18
IRL : GCAGGCTGTCGGGTTGGGGTACCTGGCTCTGGCGATCTGCGGTAAGCTTT
IRR : GCAGGCTGTCGGATTGGGCGCTGCCGTAGTGATGAGTGATGGCGACGACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GCAGGCTGTCGGGTTGGGGTACCTGGCTCTGGCGATCTGCGGTAAGCTTTCAGGATGAGCAGCTTCATTCCGTTTGATCGATCGCAGCCGTATCTTCTGC
CGCCGGATCTGAAGTCATGGCTGCCGTCGGACGATGTGGCGCATTTCATCGTGGCGGCGGTAGAGCGGGTGCCGTTGAGGGCATTTTCCGTTCCTGTGCG
GACTGGCGGCAAGGCGCAGTATCATCCGCGCCTGATGCTGGCGCTGCTGATTTACGCCTATGCGAACGGCGTGTTCTCATCGCGTCGGATCGAACGGGCG
ACATATCGTGATATCGGTATGCGCTTTGTGGCGGCGAACCTGCATCCTGACCATGACACGATCGCGACGTTCCGGCGCGGCAACCGCACGGCGATCGAGG
CAGCGTTCATGCATGTACTCCTGCTGGCACGCGAGACGGGACTGGTGCGGCTTGGCACGGTGTCGATCGACGGCACGAAGATCGATGCCAATGCCTCGAA
ATACCGTTCCATTCGTTATGATCGCGCGAAAGAGCTGCGCGAGAAACTGGCCACCGATATCTCCACCCTGATGGAACGGGCAGAGGCGGCGGATACAACC
GATGTGGATCATCAGGCGTTGCCGGAGGAACTGGCCCGGCGGGAGGCTCTGAAGGCAAAGCTGGATGAAGCCTGTGCGCGACTGGAGGCGGAAGCCCGCG
AGCAGGCCAAGACCGCCCGACCAGAATATGAGCGCAAGAAGGCAGCTTTTGATGCGAAGCGGGGACGGCGCGGTCGGCCGCCGAAAGAACCGGACGATGA
ACCGCCACCAGACCGGCAGATCAACCTGACCGATCCGGACAGCAAGCTGATGCGCCGCTCCGACGCGCATGAATACCGGCAAGCCTACAATGCCCAGGCC
GTGGTTTGTGCCGAGGGCAGCCAGTTGATCTTGGAAAATGGCGTCGTTGCGACGACGGCGGACGCGCCCAGCTTCGCCGCCACCATCCTGGGTATGGAGG
AGAGGATCGGCCTGCCACGAACCGTCCTCGCCGACACGGGTTTCGCCAGCGGCAAAGCCGTCGAAACGTTGCAGGCCAGCGGCGTGGACCCGCTGGTCGC
CATCGGACGCCCTGTGAATCGGCGCCCTTATGACTTCCGGCCAGAACCGCCACCCAGGGAGCCGCGCCGGATCACCGAGCCCTGGCGCCTGGAAATGAAG
GCCAGGCTGCAACAGAACCCGGCAAAAGCCCTTTACGCCTTACGCAAGCAGACCGTCGAACCGGTCTTCGGTATCATCAAGAGCGCCATGGGCTTCACCC
GTTTCCATCTCCGTGGCCTCCCCAACGTCGCAACAGAATGGACGCTCGTCGCCCTCGCATATAATTGCCGTAGGATCACGCGACTGACGGCCGCATAAAC
GCCGTCGTCGCCATCACTCATCACTACGGCAGCGCCCAATCCGACAGCCTGC
CGCCGGATCTGAAGTCATGGCTGCCGTCGGACGATGTGGCGCATTTCATCGTGGCGGCGGTAGAGCGGGTGCCGTTGAGGGCATTTTCCGTTCCTGTGCG
GACTGGCGGCAAGGCGCAGTATCATCCGCGCCTGATGCTGGCGCTGCTGATTTACGCCTATGCGAACGGCGTGTTCTCATCGCGTCGGATCGAACGGGCG
ACATATCGTGATATCGGTATGCGCTTTGTGGCGGCGAACCTGCATCCTGACCATGACACGATCGCGACGTTCCGGCGCGGCAACCGCACGGCGATCGAGG
CAGCGTTCATGCATGTACTCCTGCTGGCACGCGAGACGGGACTGGTGCGGCTTGGCACGGTGTCGATCGACGGCACGAAGATCGATGCCAATGCCTCGAA
ATACCGTTCCATTCGTTATGATCGCGCGAAAGAGCTGCGCGAGAAACTGGCCACCGATATCTCCACCCTGATGGAACGGGCAGAGGCGGCGGATACAACC
GATGTGGATCATCAGGCGTTGCCGGAGGAACTGGCCCGGCGGGAGGCTCTGAAGGCAAAGCTGGATGAAGCCTGTGCGCGACTGGAGGCGGAAGCCCGCG
AGCAGGCCAAGACCGCCCGACCAGAATATGAGCGCAAGAAGGCAGCTTTTGATGCGAAGCGGGGACGGCGCGGTCGGCCGCCGAAAGAACCGGACGATGA
ACCGCCACCAGACCGGCAGATCAACCTGACCGATCCGGACAGCAAGCTGATGCGCCGCTCCGACGCGCATGAATACCGGCAAGCCTACAATGCCCAGGCC
GTGGTTTGTGCCGAGGGCAGCCAGTTGATCTTGGAAAATGGCGTCGTTGCGACGACGGCGGACGCGCCCAGCTTCGCCGCCACCATCCTGGGTATGGAGG
AGAGGATCGGCCTGCCACGAACCGTCCTCGCCGACACGGGTTTCGCCAGCGGCAAAGCCGTCGAAACGTTGCAGGCCAGCGGCGTGGACCCGCTGGTCGC
CATCGGACGCCCTGTGAATCGGCGCCCTTATGACTTCCGGCCAGAACCGCCACCCAGGGAGCCGCGCCGGATCACCGAGCCCTGGCGCCTGGAAATGAAG
GCCAGGCTGCAACAGAACCCGGCAAAAGCCCTTTACGCCTTACGCAAGCAGACCGTCGAACCGGTCTTCGGTATCATCAAGAGCGCCATGGGCTTCACCC
GTTTCCATCTCCGTGGCCTCCCCAACGTCGCAACAGAATGGACGCTCGTCGCCCTCGCATATAATTGCCGTAGGATCACGCGACTGACGGCCGCATAAAC
GCCGTCGTCGCCATCACTCATCACTACGGCAGCGCCCAATCCGACAGCCTGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1344 bp | 447 aa | 55 | 1398 | + | No |
Chemistry : DDE
ORF sequence :
MSSFIPFDRSQPYLLPPDLKSWLPSDDVAHFIVAAVERVPLRAFSVPVRTGGKAQYHPRLMLALLIYAYANGVFSSRRIERATYRDIGMRFVAANLHPDH
DTIATFRRGNRTAIEAAFMHVLLLARETGLVRLGTVSIDGTKIDANASKYRSIRYDRAKELREKLATDISTLMERAEAADTTDVDHQALPEELARREALK
AKLDEACARLEAEAREQAKTARPEYERKKAAFDAKRGRRGRPPKEPDDEPPPDRQINLTDPDSKLMRRSDAHEYRQAYNAQAVVCAEGSQLILENGVVAT
TADAPSFAATILGMEERIGLPRTVLADTGFASGKAVETLQASGVDPLVAIGRPVNRRPYDFRPEPPPREPRRITEPWRLEMKARLQQNPAKALYALRKQT
VEPVFGIIKSAMGFTRFHLRGLPNVATEWTLVALAYNCRRITRLTAA
DTIATFRRGNRTAIEAAFMHVLLLARETGLVRLGTVSIDGTKIDANASKYRSIRYDRAKELREKLATDISTLMERAEAADTTDVDHQALPEELARREALK
AKLDEACARLEAEAREQAKTARPEYERKKAAFDAKRGRRGRPPKEPDDEPPPDRQINLTDPDSKLMRRSDAHEYRQAYNAQAVVCAEGSQLILENGVVAT
TADAPSFAATILGMEERIGLPRTVLADTGFASGKAVETLQASGVDPLVAIGRPVNRRPYDFRPEPPPREPRRITEPWRLEMKARLQQNPAKALYALRKQT
VEPVFGIIKSAMGFTRFHLRGLPNVATEWTLVALAYNCRRITRLTAA
Blast result :
Comments
ISGdi13 is 51% aa similar to ISKpn6.
References
1] Miriam Land (2008) direct submission.