ISGdi13

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Gluconacetobacter diazotrophicus
Gluconacetobacter diazotrophicus
DNA section
IS Length : 1452 bp

Ends


IR Length : 17/18

IRL : GCAGGCTGTCGGGTTGGGGTACCTGGCTCTGGCGATCTGCGGTAAGCTTT
IRR : GCAGGCTGTCGGATTGGGCGCTGCCGTAGTGATGAGTGATGGCGACGACG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GCAGGCTGTCGGGTTGGGGTACCTGGCTCTGGCGATCTGCGGTAAGCTTTCAGGATGAGCAGCTTCATTCCGTTTGATCGATCGCAGCCGTATCTTCTGC
CGCCGGATCTGAAGTCATGGCTGCCGTCGGACGATGTGGCGCATTTCATCGTGGCGGCGGTAGAGCGGGTGCCGTTGAGGGCATTTTCCGTTCCTGTGCG
GACTGGCGGCAAGGCGCAGTATCATCCGCGCCTGATGCTGGCGCTGCTGATTTACGCCTATGCGAACGGCGTGTTCTCATCGCGTCGGATCGAACGGGCG
ACATATCGTGATATCGGTATGCGCTTTGTGGCGGCGAACCTGCATCCTGACCATGACACGATCGCGACGTTCCGGCGCGGCAACCGCACGGCGATCGAGG
CAGCGTTCATGCATGTACTCCTGCTGGCACGCGAGACGGGACTGGTGCGGCTTGGCACGGTGTCGATCGACGGCACGAAGATCGATGCCAATGCCTCGAA
ATACCGTTCCATTCGTTATGATCGCGCGAAAGAGCTGCGCGAGAAACTGGCCACCGATATCTCCACCCTGATGGAACGGGCAGAGGCGGCGGATACAACC
GATGTGGATCATCAGGCGTTGCCGGAGGAACTGGCCCGGCGGGAGGCTCTGAAGGCAAAGCTGGATGAAGCCTGTGCGCGACTGGAGGCGGAAGCCCGCG
AGCAGGCCAAGACCGCCCGACCAGAATATGAGCGCAAGAAGGCAGCTTTTGATGCGAAGCGGGGACGGCGCGGTCGGCCGCCGAAAGAACCGGACGATGA
ACCGCCACCAGACCGGCAGATCAACCTGACCGATCCGGACAGCAAGCTGATGCGCCGCTCCGACGCGCATGAATACCGGCAAGCCTACAATGCCCAGGCC
GTGGTTTGTGCCGAGGGCAGCCAGTTGATCTTGGAAAATGGCGTCGTTGCGACGACGGCGGACGCGCCCAGCTTCGCCGCCACCATCCTGGGTATGGAGG
AGAGGATCGGCCTGCCACGAACCGTCCTCGCCGACACGGGTTTCGCCAGCGGCAAAGCCGTCGAAACGTTGCAGGCCAGCGGCGTGGACCCGCTGGTCGC
CATCGGACGCCCTGTGAATCGGCGCCCTTATGACTTCCGGCCAGAACCGCCACCCAGGGAGCCGCGCCGGATCACCGAGCCCTGGCGCCTGGAAATGAAG
GCCAGGCTGCAACAGAACCCGGCAAAAGCCCTTTACGCCTTACGCAAGCAGACCGTCGAACCGGTCTTCGGTATCATCAAGAGCGCCATGGGCTTCACCC
GTTTCCATCTCCGTGGCCTCCCCAACGTCGCAACAGAATGGACGCTCGTCGCCCTCGCATATAATTGCCGTAGGATCACGCGACTGACGGCCGCATAAAC
GCCGTCGTCGCCATCACTCATCACTACGGCAGCGCCCAATCCGACAGCCTGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1344 bp447 aa551398+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSSFIPFDRSQPYLLPPDLKSWLPSDDVAHFIVAAVERVPLRAFSVPVRTGGKAQYHPRLMLALLIYAYANGVFSSRRIERATYRDIGMRFVAANLHPDH
DTIATFRRGNRTAIEAAFMHVLLLARETGLVRLGTVSIDGTKIDANASKYRSIRYDRAKELREKLATDISTLMERAEAADTTDVDHQALPEELARREALK
AKLDEACARLEAEAREQAKTARPEYERKKAAFDAKRGRRGRPPKEPDDEPPPDRQINLTDPDSKLMRRSDAHEYRQAYNAQAVVCAEGSQLILENGVVAT
TADAPSFAATILGMEERIGLPRTVLADTGFASGKAVETLQASGVDPLVAIGRPVNRRPYDFRPEPPPREPRRITEPWRLEMKARLQQNPAKALYALRKQT
VEPVFGIIKSAMGFTRFHLRGLPNVATEWTLVALAYNCRRITRLTAA

 

Blast result :
Comments
ISGdi13 is 51% aa similar to ISKpn6.
References
1] Miriam Land (2008) direct submission.