ISGdi16

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Gluconacetobacter diazotrophicus
Gluconacetobacter diazotrophicus
DNA section
IS Length : 1524 bp

Ends


IR Length : 17/18

IRL : GATAGTGTTGAAAAAGTCGCGCTTGCTTTGAGAGTGAAGCACTGATTCAC
IRR : GATAGTGTTGAAAAACTCATGGTGAAGAGTGAAAGTGTTGCCAAGCCACT

Insertion site


Left flankDirect repeatRight flankDR Length
AATGTGGGCTGGCGAGCGAAAGCGGCCCGA4
CAGACAGGCGGATCAGGGGGAAAGCGGATGGTCCG5

DNA sequence

GATAGTGTTGAAAAAGTCGCGCTTGCTTTGAGAGTGAAGCACTGATTCACTCTTCGCAGGAGGAACCTGCAAATGATGGGTGATCGAACGAAAATACAGG
AGGCACTGTTCTACGAGTTCCGTCTTGAAGATCATGTGCCAGCTGGCCACCTTTTGCGTTCAATTGATCGCTTTGTCGATCTGGACGGCCTGCGTGAGCA
TCTTCGCCCATTTTACAGCGGCACGGGGCGGCCTTCAATCGATCCCGAGCTGATCATCAGGATGTTAATCGTTGGCTACGTGATGGGTATTCGATCCGAG
CGACGGCTATGTGAAGAAGTCCATCTTAACCTGGCCTACCGGTGGTTCTGTGGTCTTGGTCTCAACGGCCCTGTGCCTGATCATTCGACATTCTCGAAAA
ACCGGCACGGACGCTTCCGGGAGAGTGATCTGCTTCGCCAAATGTTCGAAATGACCGTCCGGCAGTGCATCGCCAAGGGACTGGTGGGCGGTGAAGGCTT
TGCGGTCGATGCCAGTACGATCAAGGCCGACGCTAATCGGCAGCGCAGTGTTCCGAGCCCAGATAAACTGCCGATCGAGGTGGCCCAACGTGCTGTGCGG
GAGTATTTCTCGGTGCTGGACGATGCTGCATTTGGGTCTGCTACGCCCGTGCAACCAAAATATATCTCTCCGGTCGATCCTGCTGCACGTTGGAACGCTG
CAAGCGGTGGCCTTGCTTATTATGCCTACTGCACAAATTACCTCATTGACCTTAAATCGGCTGTCATCATGGATGTAGAAACCACGACAGCCATCCGGCA
GGCCGAGGTTACGGCGCAACGCAGAATGATAGAGCGTACGCAGGAAACATTTGGAATATGGCCCGAAAGGCTTGCTGCGGATACAGCTTATGGATCCGCA
GAAAATCTTGCGTGGCTGGTTCATGAGCGTGGCATAGAACCTCACATTCCGGTCTTCGACAAATCTGCCCGGCAGGACGGGACTTTCGAACGTCGAGATT
TCACATATGACCACGTGCACGATCTTTACATCTGTCCTGGAGGACAGCAACTGAAGCAGCAGTGGCGCAAGATCAACTCGGATCAACCAAATGCCCCTCC
CGACAACCTACTTCGATACCGTTCGTCGAAACTGGCGTGCGACGTATGCACTCTCAAACCAAAATGCTGCCCTAATCAGCCCAATCGTAAGGTTCTGCGC
TCTATTCATGAAGGCGCTCGTGATATGGCCCGCGACATTGCTTTAACCGACGCCTATATTATCTCCAGACGAGAACGAAAGAAGGTCGAAATGCTATTTG
CTCACCTCAAGCGCATTTTGAAGATCGATCGGTTGAGGCTCAGAGGACCAAACGGCGCCCGTGATGAGTTCCATCTCGCCGCAGCTGCCCAAAATCTCCG
CAAAATGGCGAAACTGATACCTCCCGGAGTGCCTGCCTTATCCACCTGAGGCAAGAAAGCTGCACTTATGTCGAAGTGGCTTGGCAACACTTTCACTCTT
CACCATGAGTTTTTCAACACTATC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1377 bp458 aa731449+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMGDRTKIQEALFYEFRLEDHVPAGHLLRSIDRFVDLDGLREHLRPFYSGTGRPSIDPELIIRMLIVGYVMGIRSERRLCEEVHLNLAYRWFCGLGLNGP
VPDHSTFSKNRHGRFRESDLLRQMFEMTVRQCIAKGLVGGEGFAVDASTIKADANRQRSVPSPDKLPIEVAQRAVREYFSVLDDAAFGSATPVQPKYISP
VDPAARWNAASGGLAYYAYCTNYLIDLKSAVIMDVETTTAIRQAEVTAQRRMIERTQETFGIWPERLAADTAYGSAENLAWLVHERGIEPHIPVFDKSAR
QDGTFERRDFTYDHVHDLYICPGGQQLKQQWRKINSDQPNAPPDNLLRYRSSKLACDVCTLKPKCCPNQPNRKVLRSIHEGARDMARDIALTDAYIISRR
ERKKVEMLFAHLKRILKIDRLRLRGPNGARDEFHLAAAAQNLRKMAKLIPPGVPALST

 

Blast result :
Comments
ISGdi16 is 70% aa similar to ISCfr1.
References
1] Miriam Land (2008) Direct submission.