ISGdi16
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Gluconacetobacter diazotrophicus | Gluconacetobacter diazotrophicus |
DNA section
IS Length : 1524 bp
Ends
IR Length : 17/18
IRL : GATAGTGTTGAAAAAGTCGCGCTTGCTTTGAGAGTGAAGCACTGATTCAC
IRR : GATAGTGTTGAAAAACTCATGGTGAAGAGTGAAAGTGTTGCCAAGCCACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATGTGGGCTGGC | GAGC | GAAAGCGGCCCGA | 4 |
CAGACAGGCGGATCA | GGGGG | AAAGCGGATGGTCCG | 5 |
DNA sequence
GATAGTGTTGAAAAAGTCGCGCTTGCTTTGAGAGTGAAGCACTGATTCACTCTTCGCAGGAGGAACCTGCAAATGATGGGTGATCGAACGAAAATACAGG
AGGCACTGTTCTACGAGTTCCGTCTTGAAGATCATGTGCCAGCTGGCCACCTTTTGCGTTCAATTGATCGCTTTGTCGATCTGGACGGCCTGCGTGAGCA
TCTTCGCCCATTTTACAGCGGCACGGGGCGGCCTTCAATCGATCCCGAGCTGATCATCAGGATGTTAATCGTTGGCTACGTGATGGGTATTCGATCCGAG
CGACGGCTATGTGAAGAAGTCCATCTTAACCTGGCCTACCGGTGGTTCTGTGGTCTTGGTCTCAACGGCCCTGTGCCTGATCATTCGACATTCTCGAAAA
ACCGGCACGGACGCTTCCGGGAGAGTGATCTGCTTCGCCAAATGTTCGAAATGACCGTCCGGCAGTGCATCGCCAAGGGACTGGTGGGCGGTGAAGGCTT
TGCGGTCGATGCCAGTACGATCAAGGCCGACGCTAATCGGCAGCGCAGTGTTCCGAGCCCAGATAAACTGCCGATCGAGGTGGCCCAACGTGCTGTGCGG
GAGTATTTCTCGGTGCTGGACGATGCTGCATTTGGGTCTGCTACGCCCGTGCAACCAAAATATATCTCTCCGGTCGATCCTGCTGCACGTTGGAACGCTG
CAAGCGGTGGCCTTGCTTATTATGCCTACTGCACAAATTACCTCATTGACCTTAAATCGGCTGTCATCATGGATGTAGAAACCACGACAGCCATCCGGCA
GGCCGAGGTTACGGCGCAACGCAGAATGATAGAGCGTACGCAGGAAACATTTGGAATATGGCCCGAAAGGCTTGCTGCGGATACAGCTTATGGATCCGCA
GAAAATCTTGCGTGGCTGGTTCATGAGCGTGGCATAGAACCTCACATTCCGGTCTTCGACAAATCTGCCCGGCAGGACGGGACTTTCGAACGTCGAGATT
TCACATATGACCACGTGCACGATCTTTACATCTGTCCTGGAGGACAGCAACTGAAGCAGCAGTGGCGCAAGATCAACTCGGATCAACCAAATGCCCCTCC
CGACAACCTACTTCGATACCGTTCGTCGAAACTGGCGTGCGACGTATGCACTCTCAAACCAAAATGCTGCCCTAATCAGCCCAATCGTAAGGTTCTGCGC
TCTATTCATGAAGGCGCTCGTGATATGGCCCGCGACATTGCTTTAACCGACGCCTATATTATCTCCAGACGAGAACGAAAGAAGGTCGAAATGCTATTTG
CTCACCTCAAGCGCATTTTGAAGATCGATCGGTTGAGGCTCAGAGGACCAAACGGCGCCCGTGATGAGTTCCATCTCGCCGCAGCTGCCCAAAATCTCCG
CAAAATGGCGAAACTGATACCTCCCGGAGTGCCTGCCTTATCCACCTGAGGCAAGAAAGCTGCACTTATGTCGAAGTGGCTTGGCAACACTTTCACTCTT
CACCATGAGTTTTTCAACACTATC
AGGCACTGTTCTACGAGTTCCGTCTTGAAGATCATGTGCCAGCTGGCCACCTTTTGCGTTCAATTGATCGCTTTGTCGATCTGGACGGCCTGCGTGAGCA
TCTTCGCCCATTTTACAGCGGCACGGGGCGGCCTTCAATCGATCCCGAGCTGATCATCAGGATGTTAATCGTTGGCTACGTGATGGGTATTCGATCCGAG
CGACGGCTATGTGAAGAAGTCCATCTTAACCTGGCCTACCGGTGGTTCTGTGGTCTTGGTCTCAACGGCCCTGTGCCTGATCATTCGACATTCTCGAAAA
ACCGGCACGGACGCTTCCGGGAGAGTGATCTGCTTCGCCAAATGTTCGAAATGACCGTCCGGCAGTGCATCGCCAAGGGACTGGTGGGCGGTGAAGGCTT
TGCGGTCGATGCCAGTACGATCAAGGCCGACGCTAATCGGCAGCGCAGTGTTCCGAGCCCAGATAAACTGCCGATCGAGGTGGCCCAACGTGCTGTGCGG
GAGTATTTCTCGGTGCTGGACGATGCTGCATTTGGGTCTGCTACGCCCGTGCAACCAAAATATATCTCTCCGGTCGATCCTGCTGCACGTTGGAACGCTG
CAAGCGGTGGCCTTGCTTATTATGCCTACTGCACAAATTACCTCATTGACCTTAAATCGGCTGTCATCATGGATGTAGAAACCACGACAGCCATCCGGCA
GGCCGAGGTTACGGCGCAACGCAGAATGATAGAGCGTACGCAGGAAACATTTGGAATATGGCCCGAAAGGCTTGCTGCGGATACAGCTTATGGATCCGCA
GAAAATCTTGCGTGGCTGGTTCATGAGCGTGGCATAGAACCTCACATTCCGGTCTTCGACAAATCTGCCCGGCAGGACGGGACTTTCGAACGTCGAGATT
TCACATATGACCACGTGCACGATCTTTACATCTGTCCTGGAGGACAGCAACTGAAGCAGCAGTGGCGCAAGATCAACTCGGATCAACCAAATGCCCCTCC
CGACAACCTACTTCGATACCGTTCGTCGAAACTGGCGTGCGACGTATGCACTCTCAAACCAAAATGCTGCCCTAATCAGCCCAATCGTAAGGTTCTGCGC
TCTATTCATGAAGGCGCTCGTGATATGGCCCGCGACATTGCTTTAACCGACGCCTATATTATCTCCAGACGAGAACGAAAGAAGGTCGAAATGCTATTTG
CTCACCTCAAGCGCATTTTGAAGATCGATCGGTTGAGGCTCAGAGGACCAAACGGCGCCCGTGATGAGTTCCATCTCGCCGCAGCTGCCCAAAATCTCCG
CAAAATGGCGAAACTGATACCTCCCGGAGTGCCTGCCTTATCCACCTGAGGCAAGAAAGCTGCACTTATGTCGAAGTGGCTTGGCAACACTTTCACTCTT
CACCATGAGTTTTTCAACACTATC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1377 bp | 458 aa | 73 | 1449 | + | No |
Chemistry : DDE
ORF sequence :
MMGDRTKIQEALFYEFRLEDHVPAGHLLRSIDRFVDLDGLREHLRPFYSGTGRPSIDPELIIRMLIVGYVMGIRSERRLCEEVHLNLAYRWFCGLGLNGP
VPDHSTFSKNRHGRFRESDLLRQMFEMTVRQCIAKGLVGGEGFAVDASTIKADANRQRSVPSPDKLPIEVAQRAVREYFSVLDDAAFGSATPVQPKYISP
VDPAARWNAASGGLAYYAYCTNYLIDLKSAVIMDVETTTAIRQAEVTAQRRMIERTQETFGIWPERLAADTAYGSAENLAWLVHERGIEPHIPVFDKSAR
QDGTFERRDFTYDHVHDLYICPGGQQLKQQWRKINSDQPNAPPDNLLRYRSSKLACDVCTLKPKCCPNQPNRKVLRSIHEGARDMARDIALTDAYIISRR
ERKKVEMLFAHLKRILKIDRLRLRGPNGARDEFHLAAAAQNLRKMAKLIPPGVPALST
VPDHSTFSKNRHGRFRESDLLRQMFEMTVRQCIAKGLVGGEGFAVDASTIKADANRQRSVPSPDKLPIEVAQRAVREYFSVLDDAAFGSATPVQPKYISP
VDPAARWNAASGGLAYYAYCTNYLIDLKSAVIMDVETTTAIRQAEVTAQRRMIERTQETFGIWPERLAADTAYGSAENLAWLVHERGIEPHIPVFDKSAR
QDGTFERRDFTYDHVHDLYICPGGQQLKQQWRKINSDQPNAPPDNLLRYRSSKLACDVCTLKPKCCPNQPNRKVLRSIHEGARDMARDIALTDAYIISRR
ERKKVEMLFAHLKRILKIDRLRLRGPNGARDEFHLAAAAQNLRKMAKLIPPGVPALST
Blast result :
Comments
ISGdi16 is 70% aa similar to ISCfr1.
References
1] Miriam Land (2008) Direct submission.