ISGdi17

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Gluconacetobacter diazotrophicus
Gluconacetobacter diazotrophicus
DNA section
IS Length : 2482 bp

Ends


IR Length : 9/10

IRL : TGTTGATTTCCAGCGAGAACTGACCCTGTAGGGGCGGAAATTTTCATTGA
IRR : TGTTAATTTCTGCTGAGATTTGACCCTGGGTTTTCATCGAGAACTGACCC

Insertion site


Left flankDirect repeatRight flankDR Length
GGTCAGGCCGAAGGCGTGGCTGCTCGCCATAGAAGGCTTC0
CGGTCACCAGGGTCCCGATCGTTCAGGGGCGCGTGGCCTC0
TCCAGCGTGACATTGTTGGCCCCAGACGGCGATAGCCAAA0

DNA sequence

TGTTGATTTCCAGCGAGAACTGACCCTGTAGGGGCGGAAATTTTCATTGAGAATTGACCCGTGTCTGACACTTCCCCGGAGCAACTGTCCGGGGGTTAAA
GGAGTGATCAGCATGGAATTGTTGAGTGTGATCCGGCGGTGGCATTACCGGGATCATGTACCGATCCGCGAGATTGAGCGTCGGACGCGATTGTCGCGCA
ACACGATCCGCAAGTATCTCCGGGCGGAGACGGTTGAGCCGCAGTTCAAGGTTGCCGAGCGTCCGAGCCGGCTGGACCCGTTTGCGGAGAAACTGGCGAC
CTGGCTTGCTCTGGAGACGTCAAAGTCGCGCAAGCAGCGCCGCACGGGGCGGCGCCTGCATGTGGATCTTGTAGCGCTGGGTTATGACGGATCGTATGGA
CGGGTTGCGGCCTTTATCCGGAACTGGAAGGCGGAACAGCAAAGGGCGCGGCAGACGACGGGACGCGGCGTGTTCGTTCCGTTGCGCTTTCAACCCGGAG
AGGCCTTCCAGTTCGACTGGGGAGAGGACTGGGCGGTGATCGGGGGGCGGCGCGTCAAGCTGCAGGTCGCCCACACCAAGCTGTCCTACAGCCGGGCCTT
CATTCTGCGGGCGTATCCGCTCCAGACTCACGAGATGCTGTTCGACGCGCTGACGGAAGCCTTTCGCGTTTTGGGCGGGGTGCCGCGTCGAGGTATTTTT
GACAATATGAAAACCGCCGTGGACCGGGTTGGGCCCGGCAAGGTCCGCCAGGTCAATCTGCGTTTTTCGGCCCTGGTGAGCCATTATCTGTTCGAGGCGG
AGTTCTGCAATCCGGCAGCGGGTTGGGAGAAAGGTCAAATCGAGAAGACCGTCCAGGACGCCCGGCGGCAGATCTGGCAGGAGATGCCGCATTTTCCTGA
TCTGGCCTCCCTGAACGTCTGGCTCGAGGCGCGTTGCCGGGAACGTTGGACTATCTTGAGGCATGTCGAATTGCCCGGCAGCCTCGCCGAGGCCCATGCG
GCGGAAGTGCCTCACCTGATGGTTCCAGGGCGCCCGTTCGACGGGTTCGTCGAACATACCAAACGGGTTTCGCCGACTTGCCTCGTGCAGTTCGAAAGCA
ACCGCTACAGTGTGCCCGCCTCTTTTGCCAATCGGCCGGTCAGCCTGCGCGTCTATCCCGACCGGTTGGTGATCGCGGCCGAGGGGCGGATCCTATGCGA
ACATCCCCGGATCGTCGAGCGGTCCCACGGCGTGCCCGGTCGCACGATCTATGACTGGCGGCATTACTTGGCGGTGCTCCAGCGCAAACCCGGGGCCTTG
CGCAATGGCGCGCCCTTCTCTGAATTGCCCGAGGCGTTCCGGACGCTGCAGACGCACCTCCTCCGGCGCACGGGCGGCGACCGGGAAATGGTCGAGATCC
TCGCCCTGGTGCTGCAGCATGATGAGCAGGCCGTGCTTTGCGCGGTTGAACTCGCGCTCGAGGAGGGAGTAGCCACCAAGACACACGTCCTCAATACGTT
GCATCGTCTGACGGACGCCAAGAAAACAGGAGCACCCAGGCTCGACGCGCCGCAGGCATTGGTGCTCGAACGCGAGCCTCAGGCCGATACCGGACGGTAT
GACGCCCTGCGCGGGGAGGCCCGTCATGCGTCATGATCCCGCGGCCGGTGCCCTCGTCGTCATGCTGCGCGGCCTGCGGATGTATGGCATGGCCCAGGCC
ACGGCCGAACTGACCGAACAGGGTGCGCCGGCATTCGAGGCCGCCATCCCCGTCCTCTCCCAGCTTTTGAAGGCGGAACTCGCCGAGCGAGAGGTGCGCT
CCATCGCCTATCAAACCAAGACTGCCAGGTTCCCGGCCTACAAAGATTTGGCAGGGTTCGATTTCTCGGCCGCCGAGGTCAACGAGGCCATGGTCCGTCA
ACTCCATGCCGGGGATTTCATCGACCGTGCCGACAACGTCGTCCTCATTGGTGGCCCAGGAACCGGCAAGACCCATCTGGCCACCGCACTTGCCGTGCAG
GCGATCGAACATCACCGCAAGAAGATACGGTTCTGGTCCACGGTCGACCTCGTCAACGCCCTCGAACAGGAAAAAACCGCCAATCGCGCAGGACAGATCG
CGGAACGTCTCCTGCGCCTCGATCTCGTGATCCTGGACGAACTTGGCTATTTGCCGTTCAGCGCATCAGGCGGTGCCCTGCTGTTCCATCTCCTCAGCCG
TCTCTACGAGCGCACCAGCGTCATCAATCTGAGCTTCAGCGAATGGGGCGAAGTCTTCGGTGATCCCAAAATGACGACAGCCCTGCTCGATCGCCTTACC
CACCACTGTCATATCCTCGAAACCGGAAATGACAGCTACCGGTTCCGCGCAAGCTCCGCCGCCCCCAGGAACCGGAAGGAAAAGGCAACCGCTTGACCAG
CCCATAAAACATAGCAGAGATAACCAAAGGCCGGGTCAGTTCTCGATGAAAACCCAGGGTCAAATCTCAGCAGAAATTAACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1524 bp507 aa1131636+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MELLSVIRRWHYRDHVPIREIERRTRLSRNTIRKYLRAETVEPQFKVAERPSRLDPFAEKLATWLALETSKSRKQRRTGRRLHVDLVALGYDGSYGRVAA
FIRNWKAEQQRARQTTGRGVFVPLRFQPGEAFQFDWGEDWAVIGGRRVKLQVAHTKLSYSRAFILRAYPLQTHEMLFDALTEAFRVLGGVPRRGIFDNMK
TAVDRVGPGKVRQVNLRFSALVSHYLFEAEFCNPAAGWEKGQIEKTVQDARRQIWQEMPHFPDLASLNVWLEARCRERWTILRHVELPGSLAEAHAAEVP
HLMVPGRPFDGFVEHTKRVSPTCLVQFESNRYSVPASFANRPVSLRVYPDRLVIAAEGRILCEHPRIVERSHGVPGRTIYDWRHYLAVLQRKPGALRNGA
PFSELPEAFRTLQTHLLRRTGGDREMVEILALVLQHDEQAVLCAVELALEEGVATKTHVLNTLHRLTDAKKTGAPRLDAPQALVLEREPQADTGRYDALR
GEARHAS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
771 bp256 aa16262396+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MRHDPAAGALVVMLRGLRMYGMAQATAELTEQGAPAFEAAIPVLSQLLKAELAEREVRSIAYQTKTARFPAYKDLAGFDFSAAEVNEAMVRQLHAGDFID
RADNVVLIGGPGTGKTHLATALAVQAIEHHRKKIRFWSTVDLVNALEQEKTANRAGQIAERLLRLDLVILDELGYLPFSASGGALLFHLLSRLYERTSVI
NLSFSEWGEVFGDPKMTTALLDRLTHHCHILETGNDSYRFRASSAAPRNRKEKATA

 

Blast result :
Comments
ISGdi17 is 84% (ORFA) aa similar to ISRsp3 and % (ORFB) to IS
References
1] Miriam Land (2008) Direct submission.