ISDha8
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011830 | ND | Desulfitobacterium hafniense | Desulfitobacterium hafniense DCB-2 |
DNA section
IS Length : 1564 bp
Ends
IR Length : 14/15
IRL : GAGTTAGTTTCATAACTCGAAACCCTTAATATTTCAGCTTTTTTTGACAA
IRR : GAGTTAATTTCATAATGTTAGTCTGAAAATAGAATAGACTAACAGAATTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTTTTGGC | AAAT | ACATATAAA | 4 |
TTTATTGTT | AAAT | AGCAACATT | 4 |
TTTTTTTCT | AACT | CAAAAACTA | 4 |
TGTATAATA | AGTT | AATAATAAT | 4 |
AAAGTATTT | AACT | ATTAAGGTT | 4 |
ATTTCATAT | AGTT | CAAATAATC | 4 |
AGTTTTTAT | AATT | GGTTTATAA | 4 |
TGTTTAATACACT | AACCTATGTAAAA | 0 |
DNA sequence
GAGTTAGTTTCATAACTCGAAACCCTTAATATTTCAGCTTTTTTTGACAAATTAAAAAGGAGTACCTCCCCAACATCTCGAAATTGTAGTCGTCCAAAAC
CAAACACCGAGAGGTAGGAAAGGAGTACTCCCTGATGTTTAATATTCGCCAAGAACGTCTATTTTCCTTGGAGGAAATACTAGAAACTTCTCCAAGAGAA
TCATATGCTCTAATTCTTGGGCCTTTGGACATTAACCCTTTACTTGAGGCGGTTTCAAAAAAGGCAATCTTCGGAGCTCCAACTCAACTAAACTACACCG
CTATGATCTACTCTTTGATCATTCGAGTCATTGAAAGAATCCCTACAATTAAGGACTTGCGTAAGCGTTTGAAAAACAGCCTGGAATTTCGTTTCGACTG
TGGATTTACGCTTGCTGACTCGGTTCCTAGCGAAGCATCTTATTGCCGAATGATCAAAAAGATAGATGACTCCTCTGTTTTGGCTAACTCTCAGGATGAT
TTGGTGCTTCAGGCATTTAAAGAAGGGTTTATTGATCCAGAATGTGTTGTGGCAATAGATGCTACTCATATCGAAGCGAGAGATCGCAAGCCTGAAAAAA
AGCAAGAAGAAACTCCGGTTGAAAAGACTCCTAAAAAGCGTGGACGGAAGCCCAAATCAGAAAGAGAGGCATGGCTTAAGGAACAAGAGGAGCTAGAAAA
GAATCGCCCCATATTTGAGAAGAAGATTGAAGATCAACTTTCCTGCACCTTCACAGAATTAGCACAACACATTCCTCTTGATCCTCAATGGGGGATTAAA
AAGAATTCAGAAGGAAAAAACGTGTTCTGGTATGGCTTCAAAGGGCACCTCCTTGTTGATTGTAAGGGTCAGTACGTTTTAAGTTCTTTACTATCTTCAG
GGAACATAAATGATGGGAAAATGGCTATTCCTTTGCTTAAAGCGCTGAGTGAAAAACATCCTTACTTGAACCCCTCCTATATCCTCGCAGATGCTGGATA
TGACTATATCCCCATATACCAGCAAGCGAGATGTATAGGAGCACGGGCACTCATTGATTACAATAAGCGAAACGAGCAACTTCCAGAAGACAATGATAAA
TATTTTCGTCCAATATGCCAGAAGGGTTATTCGTACCGCTACGATAGCCATGATCCGCGTTATGATACTTTGAAATACACTCGACCCAAGGAATGCCAGG
AGTGTCCCCTCAAAGATAGTGATACCTGCCAAAAGGTATTTAAGATTAAGACTTTGTCAGATCCCAGAAAGTACACAGTACCAGCTAGGGGAAGCGACCG
TTACTTTGAGCTTTACAAACAACGAACCGCTGTAGAGCGAGTCAATGCGTATCTAAAGGAGTATTTCCAGCTCAACAATATCCGTCATCGCGGAAAAAGT
GCCCAAGTAGATTTTCAGTTTTCAATCCTTGCTTATACCCTCTGCAAATTAGCAGTTGACCGACTAAACAAGTCCATGAGAATTGCCGCTTAATTTTTAA
AAACGTATGCTCCGAAATTCTGTTAGTCTATTCTATTTTCAGACTAACATTATGAAATTAACTC
CAAACACCGAGAGGTAGGAAAGGAGTACTCCCTGATGTTTAATATTCGCCAAGAACGTCTATTTTCCTTGGAGGAAATACTAGAAACTTCTCCAAGAGAA
TCATATGCTCTAATTCTTGGGCCTTTGGACATTAACCCTTTACTTGAGGCGGTTTCAAAAAAGGCAATCTTCGGAGCTCCAACTCAACTAAACTACACCG
CTATGATCTACTCTTTGATCATTCGAGTCATTGAAAGAATCCCTACAATTAAGGACTTGCGTAAGCGTTTGAAAAACAGCCTGGAATTTCGTTTCGACTG
TGGATTTACGCTTGCTGACTCGGTTCCTAGCGAAGCATCTTATTGCCGAATGATCAAAAAGATAGATGACTCCTCTGTTTTGGCTAACTCTCAGGATGAT
TTGGTGCTTCAGGCATTTAAAGAAGGGTTTATTGATCCAGAATGTGTTGTGGCAATAGATGCTACTCATATCGAAGCGAGAGATCGCAAGCCTGAAAAAA
AGCAAGAAGAAACTCCGGTTGAAAAGACTCCTAAAAAGCGTGGACGGAAGCCCAAATCAGAAAGAGAGGCATGGCTTAAGGAACAAGAGGAGCTAGAAAA
GAATCGCCCCATATTTGAGAAGAAGATTGAAGATCAACTTTCCTGCACCTTCACAGAATTAGCACAACACATTCCTCTTGATCCTCAATGGGGGATTAAA
AAGAATTCAGAAGGAAAAAACGTGTTCTGGTATGGCTTCAAAGGGCACCTCCTTGTTGATTGTAAGGGTCAGTACGTTTTAAGTTCTTTACTATCTTCAG
GGAACATAAATGATGGGAAAATGGCTATTCCTTTGCTTAAAGCGCTGAGTGAAAAACATCCTTACTTGAACCCCTCCTATATCCTCGCAGATGCTGGATA
TGACTATATCCCCATATACCAGCAAGCGAGATGTATAGGAGCACGGGCACTCATTGATTACAATAAGCGAAACGAGCAACTTCCAGAAGACAATGATAAA
TATTTTCGTCCAATATGCCAGAAGGGTTATTCGTACCGCTACGATAGCCATGATCCGCGTTATGATACTTTGAAATACACTCGACCCAAGGAATGCCAGG
AGTGTCCCCTCAAAGATAGTGATACCTGCCAAAAGGTATTTAAGATTAAGACTTTGTCAGATCCCAGAAAGTACACAGTACCAGCTAGGGGAAGCGACCG
TTACTTTGAGCTTTACAAACAACGAACCGCTGTAGAGCGAGTCAATGCGTATCTAAAGGAGTATTTCCAGCTCAACAATATCCGTCATCGCGGAAAAAGT
GCCCAAGTAGATTTTCAGTTTTCAATCCTTGCTTATACCCTCTGCAAATTAGCAGTTGACCGACTAAACAAGTCCATGAGAATTGCCGCTTAATTTTTAA
AAACGTATGCTCCGAAATTCTGTTAGTCTATTCTATTTTCAGACTAACATTATGAAATTAACTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1359 bp | 452 aa | 135 | 1493 | + | No |
Chemistry : DDE
ORF sequence :
MFNIRQERLFSLEEILETSPRESYALILGPLDINPLLEAVSKKAIFGAPTQLNYTAMIYSLIIRVIERIPTIKDLRKRLKNSLEFRFDCGFTLADSVPSE
ASYCRMIKKIDDSSVLANSQDDLVLQAFKEGFIDPECVVAIDATHIEARDRKPEKKQEETPVEKTPKKRGRKPKSEREAWLKEQEELEKNRPIFEKKIED
QLSCTFTELAQHIPLDPQWGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLLKALSEKHPYLNPSYILADAGYDYIPIYQQARC
IGARALIDYNKRNEQLPEDNDKYFRPICQKGYSYRYDSHDPRYDTLKYTRPKECQECPLKDSDTCQKVFKIKTLSDPRKYTVPARGSDRYFELYKQRTAV
ERVNAYLKEYFQLNNIRHRGKSAQVDFQFSILAYTLCKLAVDRLNKSMRIAA
ASYCRMIKKIDDSSVLANSQDDLVLQAFKEGFIDPECVVAIDATHIEARDRKPEKKQEETPVEKTPKKRGRKPKSEREAWLKEQEELEKNRPIFEKKIED
QLSCTFTELAQHIPLDPQWGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLLKALSEKHPYLNPSYILADAGYDYIPIYQQARC
IGARALIDYNKRNEQLPEDNDKYFRPICQKGYSYRYDSHDPRYDTLKYTRPKECQECPLKDSDTCQKVFKIKTLSDPRKYTVPARGSDRYFELYKQRTAV
ERVNAYLKEYFQLNNIRHRGKSAQVDFQFSILAYTLCKLAVDRLNKSMRIAA
Blast result :
Comments
ISDha8 is 70% aa similar to IS662.
References
1] Miriam Land (2008) Direct submission.