ISDha8

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011830 ND Desulfitobacterium hafniense
Desulfitobacterium hafniense DCB-2
DNA section
IS Length : 1564 bp

Ends


IR Length : 14/15

IRL : GAGTTAGTTTCATAACTCGAAACCCTTAATATTTCAGCTTTTTTTGACAA
IRR : GAGTTAATTTCATAATGTTAGTCTGAAAATAGAATAGACTAACAGAATTT

Insertion site


Left flankDirect repeatRight flankDR Length
TCTTTTGGCAAATACATATAAA4
TTTATTGTTAAATAGCAACATT4
TTTTTTTCTAACTCAAAAACTA4
TGTATAATAAGTTAATAATAAT4
AAAGTATTTAACTATTAAGGTT4
ATTTCATATAGTTCAAATAATC4
AGTTTTTATAATTGGTTTATAA4
TGTTTAATACACTAACCTATGTAAAA0

DNA sequence

GAGTTAGTTTCATAACTCGAAACCCTTAATATTTCAGCTTTTTTTGACAAATTAAAAAGGAGTACCTCCCCAACATCTCGAAATTGTAGTCGTCCAAAAC
CAAACACCGAGAGGTAGGAAAGGAGTACTCCCTGATGTTTAATATTCGCCAAGAACGTCTATTTTCCTTGGAGGAAATACTAGAAACTTCTCCAAGAGAA
TCATATGCTCTAATTCTTGGGCCTTTGGACATTAACCCTTTACTTGAGGCGGTTTCAAAAAAGGCAATCTTCGGAGCTCCAACTCAACTAAACTACACCG
CTATGATCTACTCTTTGATCATTCGAGTCATTGAAAGAATCCCTACAATTAAGGACTTGCGTAAGCGTTTGAAAAACAGCCTGGAATTTCGTTTCGACTG
TGGATTTACGCTTGCTGACTCGGTTCCTAGCGAAGCATCTTATTGCCGAATGATCAAAAAGATAGATGACTCCTCTGTTTTGGCTAACTCTCAGGATGAT
TTGGTGCTTCAGGCATTTAAAGAAGGGTTTATTGATCCAGAATGTGTTGTGGCAATAGATGCTACTCATATCGAAGCGAGAGATCGCAAGCCTGAAAAAA
AGCAAGAAGAAACTCCGGTTGAAAAGACTCCTAAAAAGCGTGGACGGAAGCCCAAATCAGAAAGAGAGGCATGGCTTAAGGAACAAGAGGAGCTAGAAAA
GAATCGCCCCATATTTGAGAAGAAGATTGAAGATCAACTTTCCTGCACCTTCACAGAATTAGCACAACACATTCCTCTTGATCCTCAATGGGGGATTAAA
AAGAATTCAGAAGGAAAAAACGTGTTCTGGTATGGCTTCAAAGGGCACCTCCTTGTTGATTGTAAGGGTCAGTACGTTTTAAGTTCTTTACTATCTTCAG
GGAACATAAATGATGGGAAAATGGCTATTCCTTTGCTTAAAGCGCTGAGTGAAAAACATCCTTACTTGAACCCCTCCTATATCCTCGCAGATGCTGGATA
TGACTATATCCCCATATACCAGCAAGCGAGATGTATAGGAGCACGGGCACTCATTGATTACAATAAGCGAAACGAGCAACTTCCAGAAGACAATGATAAA
TATTTTCGTCCAATATGCCAGAAGGGTTATTCGTACCGCTACGATAGCCATGATCCGCGTTATGATACTTTGAAATACACTCGACCCAAGGAATGCCAGG
AGTGTCCCCTCAAAGATAGTGATACCTGCCAAAAGGTATTTAAGATTAAGACTTTGTCAGATCCCAGAAAGTACACAGTACCAGCTAGGGGAAGCGACCG
TTACTTTGAGCTTTACAAACAACGAACCGCTGTAGAGCGAGTCAATGCGTATCTAAAGGAGTATTTCCAGCTCAACAATATCCGTCATCGCGGAAAAAGT
GCCCAAGTAGATTTTCAGTTTTCAATCCTTGCTTATACCCTCTGCAAATTAGCAGTTGACCGACTAAACAAGTCCATGAGAATTGCCGCTTAATTTTTAA
AAACGTATGCTCCGAAATTCTGTTAGTCTATTCTATTTTCAGACTAACATTATGAAATTAACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1359 bp452 aa1351493+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFNIRQERLFSLEEILETSPRESYALILGPLDINPLLEAVSKKAIFGAPTQLNYTAMIYSLIIRVIERIPTIKDLRKRLKNSLEFRFDCGFTLADSVPSE
ASYCRMIKKIDDSSVLANSQDDLVLQAFKEGFIDPECVVAIDATHIEARDRKPEKKQEETPVEKTPKKRGRKPKSEREAWLKEQEELEKNRPIFEKKIED
QLSCTFTELAQHIPLDPQWGIKKNSEGKNVFWYGFKGHLLVDCKGQYVLSSLLSSGNINDGKMAIPLLKALSEKHPYLNPSYILADAGYDYIPIYQQARC
IGARALIDYNKRNEQLPEDNDKYFRPICQKGYSYRYDSHDPRYDTLKYTRPKECQECPLKDSDTCQKVFKIKTLSDPRKYTVPARGSDRYFELYKQRTAV
ERVNAYLKEYFQLNNIRHRGKSAQVDFQFSILAYTLCKLAVDRLNKSMRIAA

 

Blast result :
Comments
ISDha8 is 70% aa similar to IS662.
References
1] Miriam Land (2008) Direct submission.