ISDha10

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011830 ND Desulfitobacterium hafniense
Desulfitobacterium hafniense DCB-2
Desulfitobacterium hafniense Y51
DNA section
IS Length : 1976 bp

Ends


Left end : CCTCACTTGTAAGATAGATATTGGGTTAAGTTAAAAAACCTACCCGAACGTTCTTTGAAAACCTAATCCTTATTGTTCAGATGAATGAGCTGACACTCTA
Right end : GTTCGGATTTTTCAATGACTTGGTTTCTTATACCCATTTTTCTTGGACCTTGGAACTAAACTTTTTTTACATTACACCTTGACTTTAATTAGCTGGTCTT

Insertion site


Left flankDirect repeatRight flankDR Length
CATAAATCAAATAAATTGAT0
ATTCAACTCATACAGAGATA0
GTCTTATATTATAGATGGTT0
GCTTATTAAATAGTATGGCC0
CATTATATTTATCATAAGGG0

DNA sequence

CCTCACTTGTAAGATAGATATTGGGTTAAGTTAAAAAACCTACCCGAACGTTCTTTGAAAACCTAATCCTTATTGTTCAGATGAATGAGCTGACACTCTA
CGTAACCAATATCGCTAAACCTCTGGTATAATCATTTCTTGGTCAGAGAGATAGATGTGCGTACCTCCTGGATCCCTCTTTGAGGCTTATCCGTGAAAAA
GCGTGTCACTCCACAAGAATGATTCGATGTTTAGCTGGTTGGGTCACGGATTTCGTGTTACCCGTTTCAAATGCAAGGGTGTTGGCATTCTTTTTTAGTG
GATGCTCTGACTCATCTGTTGGAAAGGTTGTGTTAATTTGTCCCAGTTTCTTCATGACTTTGTTGTTGGAATCGATGTTTCTTCTGAATTCTCTGTCGTT
GCTATGCTCGCTCCCTCTGGGGAACTCATCCGCAAACCTTTTCGGATTGATCATAATCCCGCTGGCTTTCATAAACTGCTCGATATCCTAAAAAAGGAAG
AAGAGCGGTTACAACGAAAGCCCATCTACTTCGTAGAATCTACGGGTATCTTTCATTTACCACTCTTCTTCTTCTTGAGGTCGAATAACCTTAAGGGTTT
TGTGCTGAACCCCTTGAGTGTTCATTCTACCAAAAATTTCGACTTAAGAAAAGTGAAAAATGATAGTAAGGATGCCGAAGCGATTGCTAGACTGGCTAAA
TACCAAGATGTGAAGGTTTCTCTGGTTCCTGAGCCCCAAATTCTGGCTCTACGCATGATGACTCGGGAGTATTATGCTCTGTCGGATACCCTCACCGAGA
TGAAGAACAGACTATCCACGGACCTCTATCTTCTGTTCCCGGGATTCCTTGATGTGTTCTCTGGGGCCTTTGGCAAAACAGCTTTAGCCATTCTGAAAGA
TTTCCCTTCACCACGGGCCATTCTAGCCGCTGATACCGATTCACTGACTTCTCTTATCTCGAAAACCAGTCGTAAGGGGACCGCTTGGGCAACAAAGAAG
GTGAACCAACTCAAAGACTGTGCCCAGCTTGCTTCCTCCATGCCTCATGAGTTCTCTTGGCTGGATGCTAAGATCAAAGTCCATATCGACGGGATCGAAA
GCATGCAGGCCAGTTTAGACGGGGTTGTAACGCAAATACAAGCGATGATTGACTCTGAGCTCTTTCCTGCCGATGCTAAGCGTCATATTGAGCTTCTTGA
TGGTATACCTGGTATTGGCTTTCTGACAGCAGCTACGCTGATTGCAGAAATCGGAGACTTTAGGCTTTTCAACTCGGCTAAGGCCTTGACAGCTTTCTTT
GGGCTGGATCCATCCGTCAATCAGTCTGGAAAATTCCAGGGTGACCGAAATAAAATCTCGAAACGCGGCACACGGATCGGGAGAAGAATTCTGTTTACCA
TCGCTATGGCCTCCATTCGTACAACACGTAAGGGGGATGAGATCAATCCGGTTCTGCGAGAATTCTACGCGGCAAAATGCGTGAACAAGAAGAAAAAGGT
AGCTCTCGTAGCCGTAATGCATAAACTTCTCCACTACATCTTTGCTGTTCTTCGTGACCAGAAACCCTTTGAAATCAGGCAACCTGAGGATCATCAATCC
TGGAGAAATACTAAGCTCAGACAAGCACCTGCTGCTTAAACATCTCTTTGTTGCATGATTGTAAGTTTGCCCGTGTCAAGGGTGATGCGAGGGATACCGA
GGCCCTCAGGCCGAGGATATGCTCGCCATCATCCCATTGACACGGAACAACACCTAGAAGCTTGAAGACGGCAAAGTCTCTAATGCCCCAAAGTATTACT
CCATATTAAAGAGAGTTTGCCTGGCAAGCGCCGAGCGTTTCGTTCCCCCCATAGTAAATACCTCGATTTGGTCATTGTTCGGATTTTTCAATGACTTGGT
TTCTTATACCCATTTTTCTTGGACCTTGGAACTAAACTTTTTTTACATTACACCTTGACTTTAATTAGCTGGTCTT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1302 bp433 aa3381639+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MSQFLHDFVVGIDVSSEFSVVAMLAPSGELIRKPFRIDHNPAGFHKLLDILKKEEERLQRKPIYFVESTGIFHLPLFFFLRSNNLKGFVLNPLSVHSTKN
FDLRKVKNDSKDAEAIARLAKYQDVKVSLVPEPQILALRMMTREYYALSDTLTEMKNRLSTDLYLLFPGFLDVFSGAFGKTALAILKDFPSPRAILAADT
DSLTSLISKTSRKGTAWATKKVNQLKDCAQLASSMPHEFSWLDAKIKVHIDGIESMQASLDGVVTQIQAMIDSELFPADAKRHIELLDGIPGIGFLTAAT
LIAEIGDFRLFNSAKALTAFFGLDPSVNQSGKFQGDRNKISKRGTRIGRRILFTIAMASIRTTRKGDEINPVLREFYAAKCVNKKKKVALVAVMHKLLHY
IFAVLRDQKPFEIRQPEDHQSWRNTKLRQAPAA

 

Blast result :
Comments
ISDha10 is 47% aa similar to ISChy2.
References
1] Miriam Land (2008) Direct submission.
2] Maillard Julien (2009) Direct submission.