ISDha10
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_011830 | ND | Desulfitobacterium hafniense | Desulfitobacterium hafniense DCB-2 Desulfitobacterium hafniense Y51 |
DNA section
IS Length : 1976 bp
Ends
Left end : CCTCACTTGTAAGATAGATATTGGGTTAAGTTAAAAAACCTACCCGAACGTTCTTTGAAAACCTAATCCTTATTGTTCAGATGAATGAGCTGACACTCTA
Right end : GTTCGGATTTTTCAATGACTTGGTTTCTTATACCCATTTTTCTTGGACCTTGGAACTAAACTTTTTTTACATTACACCTTGACTTTAATTAGCTGGTCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATAAATCAA | ATAAATTGAT | 0 | |
ATTCAACTCA | TACAGAGATA | 0 | |
GTCTTATATT | ATAGATGGTT | 0 | |
GCTTATTAAA | TAGTATGGCC | 0 | |
CATTATATTT | ATCATAAGGG | 0 |
DNA sequence
CCTCACTTGTAAGATAGATATTGGGTTAAGTTAAAAAACCTACCCGAACGTTCTTTGAAAACCTAATCCTTATTGTTCAGATGAATGAGCTGACACTCTA
CGTAACCAATATCGCTAAACCTCTGGTATAATCATTTCTTGGTCAGAGAGATAGATGTGCGTACCTCCTGGATCCCTCTTTGAGGCTTATCCGTGAAAAA
GCGTGTCACTCCACAAGAATGATTCGATGTTTAGCTGGTTGGGTCACGGATTTCGTGTTACCCGTTTCAAATGCAAGGGTGTTGGCATTCTTTTTTAGTG
GATGCTCTGACTCATCTGTTGGAAAGGTTGTGTTAATTTGTCCCAGTTTCTTCATGACTTTGTTGTTGGAATCGATGTTTCTTCTGAATTCTCTGTCGTT
GCTATGCTCGCTCCCTCTGGGGAACTCATCCGCAAACCTTTTCGGATTGATCATAATCCCGCTGGCTTTCATAAACTGCTCGATATCCTAAAAAAGGAAG
AAGAGCGGTTACAACGAAAGCCCATCTACTTCGTAGAATCTACGGGTATCTTTCATTTACCACTCTTCTTCTTCTTGAGGTCGAATAACCTTAAGGGTTT
TGTGCTGAACCCCTTGAGTGTTCATTCTACCAAAAATTTCGACTTAAGAAAAGTGAAAAATGATAGTAAGGATGCCGAAGCGATTGCTAGACTGGCTAAA
TACCAAGATGTGAAGGTTTCTCTGGTTCCTGAGCCCCAAATTCTGGCTCTACGCATGATGACTCGGGAGTATTATGCTCTGTCGGATACCCTCACCGAGA
TGAAGAACAGACTATCCACGGACCTCTATCTTCTGTTCCCGGGATTCCTTGATGTGTTCTCTGGGGCCTTTGGCAAAACAGCTTTAGCCATTCTGAAAGA
TTTCCCTTCACCACGGGCCATTCTAGCCGCTGATACCGATTCACTGACTTCTCTTATCTCGAAAACCAGTCGTAAGGGGACCGCTTGGGCAACAAAGAAG
GTGAACCAACTCAAAGACTGTGCCCAGCTTGCTTCCTCCATGCCTCATGAGTTCTCTTGGCTGGATGCTAAGATCAAAGTCCATATCGACGGGATCGAAA
GCATGCAGGCCAGTTTAGACGGGGTTGTAACGCAAATACAAGCGATGATTGACTCTGAGCTCTTTCCTGCCGATGCTAAGCGTCATATTGAGCTTCTTGA
TGGTATACCTGGTATTGGCTTTCTGACAGCAGCTACGCTGATTGCAGAAATCGGAGACTTTAGGCTTTTCAACTCGGCTAAGGCCTTGACAGCTTTCTTT
GGGCTGGATCCATCCGTCAATCAGTCTGGAAAATTCCAGGGTGACCGAAATAAAATCTCGAAACGCGGCACACGGATCGGGAGAAGAATTCTGTTTACCA
TCGCTATGGCCTCCATTCGTACAACACGTAAGGGGGATGAGATCAATCCGGTTCTGCGAGAATTCTACGCGGCAAAATGCGTGAACAAGAAGAAAAAGGT
AGCTCTCGTAGCCGTAATGCATAAACTTCTCCACTACATCTTTGCTGTTCTTCGTGACCAGAAACCCTTTGAAATCAGGCAACCTGAGGATCATCAATCC
TGGAGAAATACTAAGCTCAGACAAGCACCTGCTGCTTAAACATCTCTTTGTTGCATGATTGTAAGTTTGCCCGTGTCAAGGGTGATGCGAGGGATACCGA
GGCCCTCAGGCCGAGGATATGCTCGCCATCATCCCATTGACACGGAACAACACCTAGAAGCTTGAAGACGGCAAAGTCTCTAATGCCCCAAAGTATTACT
CCATATTAAAGAGAGTTTGCCTGGCAAGCGCCGAGCGTTTCGTTCCCCCCATAGTAAATACCTCGATTTGGTCATTGTTCGGATTTTTCAATGACTTGGT
TTCTTATACCCATTTTTCTTGGACCTTGGAACTAAACTTTTTTTACATTACACCTTGACTTTAATTAGCTGGTCTT
CGTAACCAATATCGCTAAACCTCTGGTATAATCATTTCTTGGTCAGAGAGATAGATGTGCGTACCTCCTGGATCCCTCTTTGAGGCTTATCCGTGAAAAA
GCGTGTCACTCCACAAGAATGATTCGATGTTTAGCTGGTTGGGTCACGGATTTCGTGTTACCCGTTTCAAATGCAAGGGTGTTGGCATTCTTTTTTAGTG
GATGCTCTGACTCATCTGTTGGAAAGGTTGTGTTAATTTGTCCCAGTTTCTTCATGACTTTGTTGTTGGAATCGATGTTTCTTCTGAATTCTCTGTCGTT
GCTATGCTCGCTCCCTCTGGGGAACTCATCCGCAAACCTTTTCGGATTGATCATAATCCCGCTGGCTTTCATAAACTGCTCGATATCCTAAAAAAGGAAG
AAGAGCGGTTACAACGAAAGCCCATCTACTTCGTAGAATCTACGGGTATCTTTCATTTACCACTCTTCTTCTTCTTGAGGTCGAATAACCTTAAGGGTTT
TGTGCTGAACCCCTTGAGTGTTCATTCTACCAAAAATTTCGACTTAAGAAAAGTGAAAAATGATAGTAAGGATGCCGAAGCGATTGCTAGACTGGCTAAA
TACCAAGATGTGAAGGTTTCTCTGGTTCCTGAGCCCCAAATTCTGGCTCTACGCATGATGACTCGGGAGTATTATGCTCTGTCGGATACCCTCACCGAGA
TGAAGAACAGACTATCCACGGACCTCTATCTTCTGTTCCCGGGATTCCTTGATGTGTTCTCTGGGGCCTTTGGCAAAACAGCTTTAGCCATTCTGAAAGA
TTTCCCTTCACCACGGGCCATTCTAGCCGCTGATACCGATTCACTGACTTCTCTTATCTCGAAAACCAGTCGTAAGGGGACCGCTTGGGCAACAAAGAAG
GTGAACCAACTCAAAGACTGTGCCCAGCTTGCTTCCTCCATGCCTCATGAGTTCTCTTGGCTGGATGCTAAGATCAAAGTCCATATCGACGGGATCGAAA
GCATGCAGGCCAGTTTAGACGGGGTTGTAACGCAAATACAAGCGATGATTGACTCTGAGCTCTTTCCTGCCGATGCTAAGCGTCATATTGAGCTTCTTGA
TGGTATACCTGGTATTGGCTTTCTGACAGCAGCTACGCTGATTGCAGAAATCGGAGACTTTAGGCTTTTCAACTCGGCTAAGGCCTTGACAGCTTTCTTT
GGGCTGGATCCATCCGTCAATCAGTCTGGAAAATTCCAGGGTGACCGAAATAAAATCTCGAAACGCGGCACACGGATCGGGAGAAGAATTCTGTTTACCA
TCGCTATGGCCTCCATTCGTACAACACGTAAGGGGGATGAGATCAATCCGGTTCTGCGAGAATTCTACGCGGCAAAATGCGTGAACAAGAAGAAAAAGGT
AGCTCTCGTAGCCGTAATGCATAAACTTCTCCACTACATCTTTGCTGTTCTTCGTGACCAGAAACCCTTTGAAATCAGGCAACCTGAGGATCATCAATCC
TGGAGAAATACTAAGCTCAGACAAGCACCTGCTGCTTAAACATCTCTTTGTTGCATGATTGTAAGTTTGCCCGTGTCAAGGGTGATGCGAGGGATACCGA
GGCCCTCAGGCCGAGGATATGCTCGCCATCATCCCATTGACACGGAACAACACCTAGAAGCTTGAAGACGGCAAAGTCTCTAATGCCCCAAAGTATTACT
CCATATTAAAGAGAGTTTGCCTGGCAAGCGCCGAGCGTTTCGTTCCCCCCATAGTAAATACCTCGATTTGGTCATTGTTCGGATTTTTCAATGACTTGGT
TTCTTATACCCATTTTTCTTGGACCTTGGAACTAAACTTTTTTTACATTACACCTTGACTTTAATTAGCTGGTCTT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1302 bp | 433 aa | 338 | 1639 | + | No |
Chemistry : DEDD
ORF sequence :
MSQFLHDFVVGIDVSSEFSVVAMLAPSGELIRKPFRIDHNPAGFHKLLDILKKEEERLQRKPIYFVESTGIFHLPLFFFLRSNNLKGFVLNPLSVHSTKN
FDLRKVKNDSKDAEAIARLAKYQDVKVSLVPEPQILALRMMTREYYALSDTLTEMKNRLSTDLYLLFPGFLDVFSGAFGKTALAILKDFPSPRAILAADT
DSLTSLISKTSRKGTAWATKKVNQLKDCAQLASSMPHEFSWLDAKIKVHIDGIESMQASLDGVVTQIQAMIDSELFPADAKRHIELLDGIPGIGFLTAAT
LIAEIGDFRLFNSAKALTAFFGLDPSVNQSGKFQGDRNKISKRGTRIGRRILFTIAMASIRTTRKGDEINPVLREFYAAKCVNKKKKVALVAVMHKLLHY
IFAVLRDQKPFEIRQPEDHQSWRNTKLRQAPAA
FDLRKVKNDSKDAEAIARLAKYQDVKVSLVPEPQILALRMMTREYYALSDTLTEMKNRLSTDLYLLFPGFLDVFSGAFGKTALAILKDFPSPRAILAADT
DSLTSLISKTSRKGTAWATKKVNQLKDCAQLASSMPHEFSWLDAKIKVHIDGIESMQASLDGVVTQIQAMIDSELFPADAKRHIELLDGIPGIGFLTAAT
LIAEIGDFRLFNSAKALTAFFGLDPSVNQSGKFQGDRNKISKRGTRIGRRILFTIAMASIRTTRKGDEINPVLREFYAAKCVNKKKKVALVAVMHKLLHY
IFAVLRDQKPFEIRQPEDHQSWRNTKLRQAPAA
Blast result :
Comments
ISDha10 is 47% aa similar to ISChy2.
References
1] Miriam Land (2008) Direct submission.
2] Maillard Julien (2009) Direct submission.
2] Maillard Julien (2009) Direct submission.