ISGdi9

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Gluconacetobacter diazotrophicus
Gluconacetobacter diazotrophicus PAl 5
DNA section
IS Length : 1044 bp

Ends


IR Length : 25/26

IRL : TGTTTGGTCCCGGGATTTGGTGGTGCATTATTTTCACATGAGTGGAAGGA
IRR : TGTTTGGTCCCGGGATTTGGTGGTGCGGATTATGTATGAACCGTGATGGT

Insertion site


Left flankDirect repeatRight flankDR Length
TCTATAATGAATAGGGTAGGGCGGTCGTCGTATG6
ATCCAGAGTCACCGGCTAGAAATAGTGTCGAGCGAAGGCA0
CGACAAAAAG CCATCCTAGAGAGCTTTCGCCAAG6
GGATACCGGCGTCACCTACTCGACCTTCGGGGCG6
CACGGTCCTG GTTCCCTAGATATACTTGGCCCCG6
GGGCCGCTCCCTTGCCTAGCGCCGGACAGATCGC6
CATCGTGGCG GTCCGCTAGGCTTTGTCCGGGTTG6
CGAGGCGGTC GAGGCCTATGCAGCCTCTAACGGC6
CGCCAGTCAG GCGCGATAGGTAATGATCGAGGCC6

DNA sequence

TGTTTGGTCCCGGGATTTGGTGGTGCATTATTTTCACATGAGTGGAAGGATGCGCTATGGGCCAGGTTCACCACGGAAGCGCCACGACGACAGCGGCAGT
CCGTCGAGCGATACAACATAGTCAAGAGAGCCTGAGGGTTCTGGCGAAACGCTACGGGATCAACCCGAAGACGGTCGCCAAATGGAAGGGGCGGACCGAT
ACGTCGGATCGACGCACCGGTCCGAAGGTCGCATCCTCAACCATCCTGTCGACCGAAGAAGAAGCGATCGTTGTGGCCTTCCGTCGCCATACCCTGCTGC
CTCTTGATGATTGCCTTTATGCGCTTCAGGCGACGATCCCGCATCTGACGCGATCTTCCCTGCACCGTTGTTTTCAGCGCCATGGGATCAGCCGCCTGCC
CGAGACCGAAGGCGACAAACCAAAACGGTCGAAGTTCAAGAGTTATCCGATCGGCTATTTTCACATCGACATTGCTGAAGTCCGCACTGAAATGGGGCGC
CTTTATCTTCTGGTGGCGATCGACCGGACCTCGAAATTCGCTTTTGTCCAATTGCACGAGAAAGCGACACGTCGCGTTGCCGGTGACTTCCTGCGTGCTC
TGGCCGCTGCGGTTCCCTACCGCATCCATACCGTGCTGACCGATAACGGCACGCATTTTACCGATCCGGCCGGCAATGGATGGACACCCGAAGACATCAA
GGCCATGCGGGCGGATGGTGTCCTGTTCCGGTGCCACTCTTTTGAACTGGCCTGTGCTGATCTCGATATCGAGCATCGACTGACAAAGCCGCGACATCCC
TGGACGAATGGCCAGGTCGAGAGGATGAACCGCACGATCAAGGACGCCACCGTCAAGCGCTTCTACTACGAAACACATGACCAGTTGCGTCAACACCTCG
CCGACTTCGTTACCGCCTACAATTTCGCCCGCAGGCTCAAGACCCTGCGCGGCCTCACTCCATATGAATTCATTTGTCAGCAGTGGGAAAAAGAACCATC
ACGGTTCATACATAATCCGCACCACCAAATCCCGGGACCAAACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp330 aa571049+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGQVHHGSATTTAAVRRAIQHSQESLRVLAKRYGINPKTVAKWKGRTDTSDRRTGPKVASSTILSTEEEAIVVAFRRHTLLPLDDCLYALQATIPHLTRS
SLHRCFQRHGISRLPETEGDKPKRSKFKSYPIGYFHIDIAEVRTEMGRLYLLVAIDRTSKFAFVQLHEKATRRVAGDFLRALAAAVPYRIHTVLTDNGTH
FTDPAGNGWTPEDIKAMRADGVLFRCHSFELACADLDIEHRLTKPRHPWTNGQVERMNRTIKDATVKRFYYETHDQLRQHLADFVTAYNFARRLKTLRGL
TPYEFICQQWEKEPSRFIHNPHHQIPGPNI

 

Blast result :
Comments
ISGdi9 is 75% aa similar to ISNe2.
The STOP codon is in the direct repeat.
References
1] Miriam Land (2008) Direct submission.