ISGdi9
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Gluconacetobacter diazotrophicus | Gluconacetobacter diazotrophicus PAl 5 |
DNA section
IS Length : 1044 bp
Ends
IR Length : 25/26
IRL : TGTTTGGTCCCGGGATTTGGTGGTGCATTATTTTCACATGAGTGGAAGGA
IRR : TGTTTGGTCCCGGGATTTGGTGGTGCGGATTATGTATGAACCGTGATGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTATAATGAATAG | GGTAGG | GCGGTCGTCGTATG | 6 |
ATCCAGAGTCACCGGCTAGA | AATAGTGTCGAGCGAAGGCA | 0 | |
CGACAAAAAG CCAT | CCTAGA | GAGCTTTCGCCAAG | 6 |
GGATACCGGCGTCA | CCTACT | CGACCTTCGGGGCG | 6 |
CACGGTCCTG GTTC | CCTAGA | TATACTTGGCCCCG | 6 |
GGGCCGCTCCCTTG | CCTAGC | GCCGGACAGATCGC | 6 |
CATCGTGGCG GTCC | GCTAGG | CTTTGTCCGGGTTG | 6 |
CGAGGCGGTC GAGG | CCTATG | CAGCCTCTAACGGC | 6 |
CGCCAGTCAG GCGC | GATAGG | TAATGATCGAGGCC | 6 |
DNA sequence
TGTTTGGTCCCGGGATTTGGTGGTGCATTATTTTCACATGAGTGGAAGGATGCGCTATGGGCCAGGTTCACCACGGAAGCGCCACGACGACAGCGGCAGT
CCGTCGAGCGATACAACATAGTCAAGAGAGCCTGAGGGTTCTGGCGAAACGCTACGGGATCAACCCGAAGACGGTCGCCAAATGGAAGGGGCGGACCGAT
ACGTCGGATCGACGCACCGGTCCGAAGGTCGCATCCTCAACCATCCTGTCGACCGAAGAAGAAGCGATCGTTGTGGCCTTCCGTCGCCATACCCTGCTGC
CTCTTGATGATTGCCTTTATGCGCTTCAGGCGACGATCCCGCATCTGACGCGATCTTCCCTGCACCGTTGTTTTCAGCGCCATGGGATCAGCCGCCTGCC
CGAGACCGAAGGCGACAAACCAAAACGGTCGAAGTTCAAGAGTTATCCGATCGGCTATTTTCACATCGACATTGCTGAAGTCCGCACTGAAATGGGGCGC
CTTTATCTTCTGGTGGCGATCGACCGGACCTCGAAATTCGCTTTTGTCCAATTGCACGAGAAAGCGACACGTCGCGTTGCCGGTGACTTCCTGCGTGCTC
TGGCCGCTGCGGTTCCCTACCGCATCCATACCGTGCTGACCGATAACGGCACGCATTTTACCGATCCGGCCGGCAATGGATGGACACCCGAAGACATCAA
GGCCATGCGGGCGGATGGTGTCCTGTTCCGGTGCCACTCTTTTGAACTGGCCTGTGCTGATCTCGATATCGAGCATCGACTGACAAAGCCGCGACATCCC
TGGACGAATGGCCAGGTCGAGAGGATGAACCGCACGATCAAGGACGCCACCGTCAAGCGCTTCTACTACGAAACACATGACCAGTTGCGTCAACACCTCG
CCGACTTCGTTACCGCCTACAATTTCGCCCGCAGGCTCAAGACCCTGCGCGGCCTCACTCCATATGAATTCATTTGTCAGCAGTGGGAAAAAGAACCATC
ACGGTTCATACATAATCCGCACCACCAAATCCCGGGACCAAACA
CCGTCGAGCGATACAACATAGTCAAGAGAGCCTGAGGGTTCTGGCGAAACGCTACGGGATCAACCCGAAGACGGTCGCCAAATGGAAGGGGCGGACCGAT
ACGTCGGATCGACGCACCGGTCCGAAGGTCGCATCCTCAACCATCCTGTCGACCGAAGAAGAAGCGATCGTTGTGGCCTTCCGTCGCCATACCCTGCTGC
CTCTTGATGATTGCCTTTATGCGCTTCAGGCGACGATCCCGCATCTGACGCGATCTTCCCTGCACCGTTGTTTTCAGCGCCATGGGATCAGCCGCCTGCC
CGAGACCGAAGGCGACAAACCAAAACGGTCGAAGTTCAAGAGTTATCCGATCGGCTATTTTCACATCGACATTGCTGAAGTCCGCACTGAAATGGGGCGC
CTTTATCTTCTGGTGGCGATCGACCGGACCTCGAAATTCGCTTTTGTCCAATTGCACGAGAAAGCGACACGTCGCGTTGCCGGTGACTTCCTGCGTGCTC
TGGCCGCTGCGGTTCCCTACCGCATCCATACCGTGCTGACCGATAACGGCACGCATTTTACCGATCCGGCCGGCAATGGATGGACACCCGAAGACATCAA
GGCCATGCGGGCGGATGGTGTCCTGTTCCGGTGCCACTCTTTTGAACTGGCCTGTGCTGATCTCGATATCGAGCATCGACTGACAAAGCCGCGACATCCC
TGGACGAATGGCCAGGTCGAGAGGATGAACCGCACGATCAAGGACGCCACCGTCAAGCGCTTCTACTACGAAACACATGACCAGTTGCGTCAACACCTCG
CCGACTTCGTTACCGCCTACAATTTCGCCCGCAGGCTCAAGACCCTGCGCGGCCTCACTCCATATGAATTCATTTGTCAGCAGTGGGAAAAAGAACCATC
ACGGTTCATACATAATCCGCACCACCAAATCCCGGGACCAAACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
993 bp | 330 aa | 57 | 1049 | + | No |
Chemistry : DDE
ORF sequence :
MGQVHHGSATTTAAVRRAIQHSQESLRVLAKRYGINPKTVAKWKGRTDTSDRRTGPKVASSTILSTEEEAIVVAFRRHTLLPLDDCLYALQATIPHLTRS
SLHRCFQRHGISRLPETEGDKPKRSKFKSYPIGYFHIDIAEVRTEMGRLYLLVAIDRTSKFAFVQLHEKATRRVAGDFLRALAAAVPYRIHTVLTDNGTH
FTDPAGNGWTPEDIKAMRADGVLFRCHSFELACADLDIEHRLTKPRHPWTNGQVERMNRTIKDATVKRFYYETHDQLRQHLADFVTAYNFARRLKTLRGL
TPYEFICQQWEKEPSRFIHNPHHQIPGPNI
SLHRCFQRHGISRLPETEGDKPKRSKFKSYPIGYFHIDIAEVRTEMGRLYLLVAIDRTSKFAFVQLHEKATRRVAGDFLRALAAAVPYRIHTVLTDNGTH
FTDPAGNGWTPEDIKAMRADGVLFRCHSFELACADLDIEHRLTKPRHPWTNGQVERMNRTIKDATVKRFYYETHDQLRQHLADFVTAYNFARRLKTLRGL
TPYEFICQQWEKEPSRFIHNPHHQIPGPNI
Blast result :
Comments
ISGdi9 is 75% aa similar to ISNe2.
The STOP codon is in the direct repeat.
The STOP codon is in the direct repeat.
References
1] Miriam Land (2008) Direct submission.