ISFpe1
- Family IS66
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AATP00000000 | ND | Fulvimarina pelagi | Fulvimarina pelagi HTCC2506 |
DNA section
IS Length : 2489 bp
Ends
IR Length : 21/30
IRL : GTAAGCGTTGCCGTCACCCCACCTTGCTGATTGCGGCGTAGCCAGCGAGT
IRR : GTAAGCGTCATCCTCAGGCCACCGCGGTGAGATCGACTTTCGGCTTGAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTATAGAGG | GAACAGAT | TGACCTCCCT | 8 |
DNA sequence
GTAAGCGTTGCCGTCACCCCACCTTGCTGATTGCGGCGTAGCCAGCGAGTTTCCGAGCCTTTCATGCGAGGTAGAGGCTTGGAGCTATGTCGATGTCATG
TGCTGATGCTGGCACTAAGCCAGTTCGGCGGTTCGAGGTCTTCACGGGCGCAGGACGGCGGCGCGACTGGAGCGACGAAGAGAAGGCGGCGATCGTCGCC
GAGAGCTATTCCGGCTTGGAAAGCGTTTGTGCCGTTGCCCGGCGTCACGGACTGAGCCATTCGCAACTCTTCACCTGGCGGCGCAAGTTGCGAGAGACGG
CTCTTGTGAAGTCCGATGCGACCGCGACCGAACCGGCATTCGTGCCGGCAATCGTCGAGCCTTCCATCATCGAGAAGAAGCCTCGCGCGAAGCGGAAACG
GTCACGCTCGTCCGGCAAGGCGATCCCGGCGGTCGAACTGGAGATCGACGGCGTCGCGGTGAAGATCGCCAAGGGTGCCGACGCAAAAACGATCGCGGCA
GTGATCGACGCATTGAAGGGAAGCGCGTGATCGGGCCAAGCGGCGCCGTTCGCGTTATGGTCGCGACGAAGCCCGTCGACTTCCGCAAAGGCGCCGAGGG
TCTCGCCGCCCTTGTGCGCGAGACGATGGCGGCCGATCCCTTTGGCGGTACGATCTACGTCTTCCGAGCCAAACGCGCCGACCGGATCAAGCTGATCTTC
TGGGACGGCACCGGTCTGGTTCTCGTTGCAAAGCGGCTCGAGGACGGCGCGTTCAAATGGCCTGCGATCACGGACGGCGTCATTCGGCTGACAGCCGCAC
AGCTCTCCGCGCTTCTCGAAGGTCTGGACTGGCGCCGCGTTCACGAGGCCCGAACGACACGGGTGCCCGAAGCTGTGAGCTGATCGGCATCGACGCCGAT
AAATCTCTCGCCGAAGGCGCGAGATTATGATTCTCTTCGGTTCATGGCCACTGCTCTCGAAGCACTTCCCGACGATCCCGGCACGCTGAAGGCGATGCTG
ATCGCCGAGCGCGTGCGGTCCGAGCGTCTTGAGCAGATCATCAAGGAATTGCAGCGCCATCGCTTCGGCCGCCGGGCCGAGACGCTGCCCGAGGACCAGC
TTCTTCTCGGTCTCGAAGACGTCGAGCAAGGCGTTGCCGTCGAAGAGGCCGAGGCTGAAAGCGCCGATCCAGAACGAAAGACCGAACGGGCGGCGAAGCG
CCGGGCGAACCGCGGTTCTCTGCCGGCCCATCTGCCGCGGATCGAGACCGTCGTCGACATCGAGGACAAGTCCTGTCCGTGCTGCCGGCATTGGCTCCAC
GTCATCGGCGAGGATGTCGCCGAGCGGCTCGACATCGTGCCCGCCCAGTTCCGTGTTCTTGTGACAAGGCGGCCGCGCTACGGCTGCCGGGCCTGCGAGG
GCGTCGTCGTTCAGGCACCTGCACCGAACAGATTGATCGAGGGCGGCATTCCGACCGAGGCGACGGTAGCGCAGGTCCTGGTCTCCAAATACGCCGATCA
CCTGCCGCTCTATCGTCAGGCGCAGATCTATGCCCGCCAGGGCGTGCGGCTCGACCGATCGACGCTCGCGGATTGGGTTGGACGGGCGGCCTTCCTGCTC
AGGCCTATCCACGAGCGGCTTCTCGGCCACTTGAAGGCGTCCACCAAGCTCTTCGCCGACGAAACGACTGCGCCAGTCCTCGATCCCGGGCGCGGTCGGA
CCAAGACCGGCCAGTTCTTCGCCTATGCCCGCGACGATCGTCCCTTCGGCGGCGATGATCCGCCGGCGGTCGCCTACATCTACGCGCCGGACCGAAAGGC
GGTGCGCCCCACCGAGCATTTACAGGACTTCAACGGCATCCTGCAGGTCGATGGCTATAGCGGCTACAAGGCGCTCGCCGAGAAGGGACAGGTGCGTCTA
GCCTTCTGTTGGGCGCATGTCCGTCGGCGGTTCTATGAACTCGCCGCCAATGGACCTGCGTCGATCGCGACGGAGGCGTTGAAGCGCATCGCCGCGCTCT
ACCAGATCGAGACCACCATCCGCGGCCGGTCTCCTGACGAGCGTCGGAAAGTTCGGCAGGAGAAAAGCCTGCCACTCCTCGACGCGCTGGAAGCCTTCCT
GCGCGAGAAGCTCGCCCTGATCAGCCAGAAGACGAAGCTCGCCGAGGCGATCCGATATGCGCTGTCACGATGGGAGGGACTTTGCCGGTTCGCCGGTGAC
GGCACGATCGAGATCGACAACAACACCGTCGAGCGCTCGATCCGCCCATTGGCGCTGACGCGCAAGAATGCGCTCTTCGCCGGTTCCGACGGCGGTGCCC
GGCACTGGGCCGTCGTCGCCTCGCTCATCGAGACCTGCAAGCTAAACGACGTCGATCCGTACGCCTATCTCAGCGCCGTCATCACCTGCATCGTCGACGG
CCATCCCAACAGCGCGATCGACGACCTCATGCCGTGGACATTCAAGCCGAAAGTCGATCTCACCGCGGTGGCCTGAGGATGACGCTTAC
TGCTGATGCTGGCACTAAGCCAGTTCGGCGGTTCGAGGTCTTCACGGGCGCAGGACGGCGGCGCGACTGGAGCGACGAAGAGAAGGCGGCGATCGTCGCC
GAGAGCTATTCCGGCTTGGAAAGCGTTTGTGCCGTTGCCCGGCGTCACGGACTGAGCCATTCGCAACTCTTCACCTGGCGGCGCAAGTTGCGAGAGACGG
CTCTTGTGAAGTCCGATGCGACCGCGACCGAACCGGCATTCGTGCCGGCAATCGTCGAGCCTTCCATCATCGAGAAGAAGCCTCGCGCGAAGCGGAAACG
GTCACGCTCGTCCGGCAAGGCGATCCCGGCGGTCGAACTGGAGATCGACGGCGTCGCGGTGAAGATCGCCAAGGGTGCCGACGCAAAAACGATCGCGGCA
GTGATCGACGCATTGAAGGGAAGCGCGTGATCGGGCCAAGCGGCGCCGTTCGCGTTATGGTCGCGACGAAGCCCGTCGACTTCCGCAAAGGCGCCGAGGG
TCTCGCCGCCCTTGTGCGCGAGACGATGGCGGCCGATCCCTTTGGCGGTACGATCTACGTCTTCCGAGCCAAACGCGCCGACCGGATCAAGCTGATCTTC
TGGGACGGCACCGGTCTGGTTCTCGTTGCAAAGCGGCTCGAGGACGGCGCGTTCAAATGGCCTGCGATCACGGACGGCGTCATTCGGCTGACAGCCGCAC
AGCTCTCCGCGCTTCTCGAAGGTCTGGACTGGCGCCGCGTTCACGAGGCCCGAACGACACGGGTGCCCGAAGCTGTGAGCTGATCGGCATCGACGCCGAT
AAATCTCTCGCCGAAGGCGCGAGATTATGATTCTCTTCGGTTCATGGCCACTGCTCTCGAAGCACTTCCCGACGATCCCGGCACGCTGAAGGCGATGCTG
ATCGCCGAGCGCGTGCGGTCCGAGCGTCTTGAGCAGATCATCAAGGAATTGCAGCGCCATCGCTTCGGCCGCCGGGCCGAGACGCTGCCCGAGGACCAGC
TTCTTCTCGGTCTCGAAGACGTCGAGCAAGGCGTTGCCGTCGAAGAGGCCGAGGCTGAAAGCGCCGATCCAGAACGAAAGACCGAACGGGCGGCGAAGCG
CCGGGCGAACCGCGGTTCTCTGCCGGCCCATCTGCCGCGGATCGAGACCGTCGTCGACATCGAGGACAAGTCCTGTCCGTGCTGCCGGCATTGGCTCCAC
GTCATCGGCGAGGATGTCGCCGAGCGGCTCGACATCGTGCCCGCCCAGTTCCGTGTTCTTGTGACAAGGCGGCCGCGCTACGGCTGCCGGGCCTGCGAGG
GCGTCGTCGTTCAGGCACCTGCACCGAACAGATTGATCGAGGGCGGCATTCCGACCGAGGCGACGGTAGCGCAGGTCCTGGTCTCCAAATACGCCGATCA
CCTGCCGCTCTATCGTCAGGCGCAGATCTATGCCCGCCAGGGCGTGCGGCTCGACCGATCGACGCTCGCGGATTGGGTTGGACGGGCGGCCTTCCTGCTC
AGGCCTATCCACGAGCGGCTTCTCGGCCACTTGAAGGCGTCCACCAAGCTCTTCGCCGACGAAACGACTGCGCCAGTCCTCGATCCCGGGCGCGGTCGGA
CCAAGACCGGCCAGTTCTTCGCCTATGCCCGCGACGATCGTCCCTTCGGCGGCGATGATCCGCCGGCGGTCGCCTACATCTACGCGCCGGACCGAAAGGC
GGTGCGCCCCACCGAGCATTTACAGGACTTCAACGGCATCCTGCAGGTCGATGGCTATAGCGGCTACAAGGCGCTCGCCGAGAAGGGACAGGTGCGTCTA
GCCTTCTGTTGGGCGCATGTCCGTCGGCGGTTCTATGAACTCGCCGCCAATGGACCTGCGTCGATCGCGACGGAGGCGTTGAAGCGCATCGCCGCGCTCT
ACCAGATCGAGACCACCATCCGCGGCCGGTCTCCTGACGAGCGTCGGAAAGTTCGGCAGGAGAAAAGCCTGCCACTCCTCGACGCGCTGGAAGCCTTCCT
GCGCGAGAAGCTCGCCCTGATCAGCCAGAAGACGAAGCTCGCCGAGGCGATCCGATATGCGCTGTCACGATGGGAGGGACTTTGCCGGTTCGCCGGTGAC
GGCACGATCGAGATCGACAACAACACCGTCGAGCGCTCGATCCGCCCATTGGCGCTGACGCGCAAGAATGCGCTCTTCGCCGGTTCCGACGGCGGTGCCC
GGCACTGGGCCGTCGTCGCCTCGCTCATCGAGACCTGCAAGCTAAACGACGTCGATCCGTACGCCTATCTCAGCGCCGTCATCACCTGCATCGTCGACGG
CCATCCCAACAGCGCGATCGACGACCTCATGCCGTGGACATTCAAGCCGAAAGTCGATCTCACCGCGGTGGCCTGAGGATGACGCTTAC
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
444 bp | 147 aa | 87 | 530 | + | No |
AG : IS66 TnpA
ORF sequence :
MSMSCADAGTKPVRRFEVFTGAGRRRDWSDEEKAAIVAESYSGLESVCAVARRHGLSHSQLFTWRRKLRETALVKSDATATEPAFVPAIVEPSIIEKKPR
AKRKRSRSSGKAIPAVELEIDGVAVKIAKGADAKTIAAVIDALKGSA
AKRKRSRSSGKAIPAVELEIDGVAVKIAKGADAKTIAAVIDALKGSA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
327 bp | 108 aa | 557 | 883 | + | No |
AG : IS66 TnpB
ORF sequence :
MVATKPVDFRKGAEGLAALVRETMAADPFGGTIYVFRAKRADRIKLIFWDGTGLVLVAKRLEDGAFKWPAITDGVIRLTAAQLSALLEGLDWRRVHEART
TRVPEAVS
TRVPEAVS
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1533 bp | 510 aa | 944 | 2476 | + | No |
Chemistry : DDE
ORF sequence :
MATALEALPDDPGTLKAMLIAERVRSERLEQIIKELQRHRFGRRAETLPEDQLLLGLEDVEQGVAVEEAEAESADPERKTERAAKRRANRGSLPAHLPRI
ETVVDIEDKSCPCCRHWLHVIGEDVAERLDIVPAQFRVLVTRRPRYGCRACEGVVVQAPAPNRLIEGGIPTEATVAQVLVSKYADHLPLYRQAQIYARQG
VRLDRSTLADWVGRAAFLLRPIHERLLGHLKASTKLFADETTAPVLDPGRGRTKTGQFFAYARDDRPFGGDDPPAVAYIYAPDRKAVRPTEHLQDFNGIL
QVDGYSGYKALAEKGQVRLAFCWAHVRRRFYELAANGPASIATEALKRIAALYQIETTIRGRSPDERRKVRQEKSLPLLDALEAFLREKLALISQKTKLA
EAIRYALSRWEGLCRFAGDGTIEIDNNTVERSIRPLALTRKNALFAGSDGGARHWAVVASLIETCKLNDVDPYAYLSAVITCIVDGHPNSAIDDLMPWTF
KPKVDLTAVA
ETVVDIEDKSCPCCRHWLHVIGEDVAERLDIVPAQFRVLVTRRPRYGCRACEGVVVQAPAPNRLIEGGIPTEATVAQVLVSKYADHLPLYRQAQIYARQG
VRLDRSTLADWVGRAAFLLRPIHERLLGHLKASTKLFADETTAPVLDPGRGRTKTGQFFAYARDDRPFGGDDPPAVAYIYAPDRKAVRPTEHLQDFNGIL
QVDGYSGYKALAEKGQVRLAFCWAHVRRRFYELAANGPASIATEALKRIAALYQIETTIRGRSPDERRKVRQEKSLPLLDALEAFLREKLALISQKTKLA
EAIRYALSRWEGLCRFAGDGTIEIDNNTVERSIRPLALTRKNALFAGSDGGARHWAVVASLIETCKLNDVDPYAYLSAVITCIVDGHPNSAIDDLMPWTF
KPKVDLTAVA
Blast result :
Comments
ISFpe1 orf1, orf2 and orf3 are respectively 55%, 80% and 73% aa similar to ISApr6 orf1, orf2 and orf3.
References
1] ISfinder annotation (2008).
2] Giovannoni,S.J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct Submission GenBank.
2] Giovannoni,S.J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct Submission GenBank.