ISGdi7

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Gluconacetobacter diazotrophicus
Gluconacetobacter diazotrophicus PAl 5
DNA section
IS Length : 1518 bp

Ends


IR Length : 7

IRL : agatgctATGAGGGCAGACACCGCCGGCAAGAAAGGCTCAATCTCAAGCG
IRR : ----tacATGAGGGTTCAGGTGTCAACGTATTTTCGCGATGGCGTGTCTC

Insertion site


Left flankDirect repeatRight flankDR Length
GCCGATCGAGATCTGGTTCCAGGACGAGGCCCGGATCGGC0

DNA sequence

AGATGCTATGAGGGCAGACACCGCCGGCAAGAAAGGCTCAATCTCAAGCGTGTCAGCACCAATGACGAGGGAGTTCCTGCCATGTCATCCGAGAACGCCA
TTCACATTGCCATCGAACTCAGCGTTTCCTCCTGGCTTGTCGCGGTAAAGACTATCTCGGGAGCCACGAAATCCCGATTGCATCGCCTCGAAGGTGGAGA
CGCCTCAGGGCTGCTGAAATTGATCGCGGAGCTTCAAACGCGCGCGTCGACCCAGCCGGGTGATGTCGCGGAGGTGTCATGCTGTTTCGAGGCCGGCCGC
GATGGCTTCTGGCTGTATCGTTTGCTGACAGCGCACGGCATCGCCGCGTATGTGCTTGAGCCCACGAGCATTCTGGTCAATCGTCGCGCACGTCGGGCCA
AGACGGACCGTCTCGACGCGGAAGGCATGCTGCGTGTTCTTGCGGCATGGCTTAATGGTGATCGCCAGATATGCAGCATGGTGCGTGTGCCGACGCCCGA
CGAGGAGGATGCCAAACGTACACACCGCGAACGCGAACACCTTGTTCAGGAAAGGCTGCGTATCGAAAACAGAATAGAGGCGCTGCTGTTTACCCAGGGC
ATCCGGGGTAGACCGTCGTTACGGTCCTGGGAACGCGACGTCGCCGCGTTGCGCACGGGCGACGGGCGGGAACTGCCGCCGTTCCTTCGTGCTGAACTCG
ACCGCCTGCGTCGTCGGCTTCTCCTGGCGTTGGAACTGATCCGAGAACTGGAAACTGAACGGGCCAAGACACTGGACGCCGCAGCGATGGATGACCGTGT
GACTCAAAAGATCGTCTCGCTGAAACAGATCCGCGGCATCGGCGAGAATTTCGCTGCCGTTCTCGTTCGGGAGGTGTTCTATCGCCGCTTCGACAACCGT
CGCCAACTGGCCAGTTACGTCGGCATTACGCCTATGCCTTATCAAAGTGGCAGCATGGATCGTGATCGAAGCATCAGCCGGGCCGGAAACCCGCGAGCGC
GGACGGCGATGATCCAACTCGCCTGGCTTTGGCTACGCTATCAGCCCGCAAGCGGGCTCGCCTCATGGTTTCGTGAGCGCGTCGGCACCTTGAAAGGGCG
GACACGCCGCATTGCGATCGTGGCCATGGCGAGAAAGCTTCTGATTGCGCTTTGGCGCTATGTGGAGACAGGATCGATACCGGACGGTCTCGCATTCGGC
ACCGGAACGACCGCAGAATAGATAGACAGAAGTGCCGCGGGCCGATCAGTCGTCGGCGGCGATACGGGGAACGCGACCGTCTTCTTCTTTGGTAGCGCCA
CGCTACCGCGTTTCAGGTGGGTCGCGCGTCGTCGGGGCAGAGCCTCGTGCAAGAGGCATTATGGTGCGGGTCGCTCGCGCGATCCGACCGCATGTAAGGT
GATGCAGCCGCTGCTGCGATACGGAAGGGCCCCGAGCCCATAAAAGCACCTGACTTAAGACCATAGGGACAGGAGACACGCCATCGCGAAAATACGTTGA
CACCTGAACCCTCATGTA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1140 bp379 aa821221+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MSSENAIHIAIELSVSSWLVAVKTISGATKSRLHRLEGGDASGLLKLIAELQTRASTQPGDVAEVSCCFEAGRDGFWLYRLLTAHGIAAYVLEPTSILVN
RRARRAKTDRLDAEGMLRVLAAWLNGDRQICSMVRVPTPDEEDAKRTHREREHLVQERLRIENRIEALLFTQGIRGRPSLRSWERDVAALRTGDGRELPP
FLRAELDRLRRRLLLALELIRELETERAKTLDAAAMDDRVTQKIVSLKQIRGIGENFAAVLVREVFYRRFDNRRQLASYVGITPMPYQSGSMDRDRSISR
AGNPRARTAMIQLAWLWLRYQPASGLASWFRERVGTLKGRTRRIAIVAMARKLLIALWRYVETGSIPDGLAFGTGTTAE

 

Blast result :
Comments
ISGdi7 is 43% aa similar to ISVisp2.
References
1] Miriam land (2008) Direct submission.