ISGdi7
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Gluconacetobacter diazotrophicus | Gluconacetobacter diazotrophicus PAl 5 |
DNA section
IS Length : 1518 bp
Ends
IR Length : 7
IRL : agatgctATGAGGGCAGACACCGCCGGCAAGAAAGGCTCAATCTCAAGCG
IRR : ----tacATGAGGGTTCAGGTGTCAACGTATTTTCGCGATGGCGTGTCTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCGATCGAGATCTGGTTCC | AGGACGAGGCCCGGATCGGC | 0 |
DNA sequence
AGATGCTATGAGGGCAGACACCGCCGGCAAGAAAGGCTCAATCTCAAGCGTGTCAGCACCAATGACGAGGGAGTTCCTGCCATGTCATCCGAGAACGCCA
TTCACATTGCCATCGAACTCAGCGTTTCCTCCTGGCTTGTCGCGGTAAAGACTATCTCGGGAGCCACGAAATCCCGATTGCATCGCCTCGAAGGTGGAGA
CGCCTCAGGGCTGCTGAAATTGATCGCGGAGCTTCAAACGCGCGCGTCGACCCAGCCGGGTGATGTCGCGGAGGTGTCATGCTGTTTCGAGGCCGGCCGC
GATGGCTTCTGGCTGTATCGTTTGCTGACAGCGCACGGCATCGCCGCGTATGTGCTTGAGCCCACGAGCATTCTGGTCAATCGTCGCGCACGTCGGGCCA
AGACGGACCGTCTCGACGCGGAAGGCATGCTGCGTGTTCTTGCGGCATGGCTTAATGGTGATCGCCAGATATGCAGCATGGTGCGTGTGCCGACGCCCGA
CGAGGAGGATGCCAAACGTACACACCGCGAACGCGAACACCTTGTTCAGGAAAGGCTGCGTATCGAAAACAGAATAGAGGCGCTGCTGTTTACCCAGGGC
ATCCGGGGTAGACCGTCGTTACGGTCCTGGGAACGCGACGTCGCCGCGTTGCGCACGGGCGACGGGCGGGAACTGCCGCCGTTCCTTCGTGCTGAACTCG
ACCGCCTGCGTCGTCGGCTTCTCCTGGCGTTGGAACTGATCCGAGAACTGGAAACTGAACGGGCCAAGACACTGGACGCCGCAGCGATGGATGACCGTGT
GACTCAAAAGATCGTCTCGCTGAAACAGATCCGCGGCATCGGCGAGAATTTCGCTGCCGTTCTCGTTCGGGAGGTGTTCTATCGCCGCTTCGACAACCGT
CGCCAACTGGCCAGTTACGTCGGCATTACGCCTATGCCTTATCAAAGTGGCAGCATGGATCGTGATCGAAGCATCAGCCGGGCCGGAAACCCGCGAGCGC
GGACGGCGATGATCCAACTCGCCTGGCTTTGGCTACGCTATCAGCCCGCAAGCGGGCTCGCCTCATGGTTTCGTGAGCGCGTCGGCACCTTGAAAGGGCG
GACACGCCGCATTGCGATCGTGGCCATGGCGAGAAAGCTTCTGATTGCGCTTTGGCGCTATGTGGAGACAGGATCGATACCGGACGGTCTCGCATTCGGC
ACCGGAACGACCGCAGAATAGATAGACAGAAGTGCCGCGGGCCGATCAGTCGTCGGCGGCGATACGGGGAACGCGACCGTCTTCTTCTTTGGTAGCGCCA
CGCTACCGCGTTTCAGGTGGGTCGCGCGTCGTCGGGGCAGAGCCTCGTGCAAGAGGCATTATGGTGCGGGTCGCTCGCGCGATCCGACCGCATGTAAGGT
GATGCAGCCGCTGCTGCGATACGGAAGGGCCCCGAGCCCATAAAAGCACCTGACTTAAGACCATAGGGACAGGAGACACGCCATCGCGAAAATACGTTGA
CACCTGAACCCTCATGTA
TTCACATTGCCATCGAACTCAGCGTTTCCTCCTGGCTTGTCGCGGTAAAGACTATCTCGGGAGCCACGAAATCCCGATTGCATCGCCTCGAAGGTGGAGA
CGCCTCAGGGCTGCTGAAATTGATCGCGGAGCTTCAAACGCGCGCGTCGACCCAGCCGGGTGATGTCGCGGAGGTGTCATGCTGTTTCGAGGCCGGCCGC
GATGGCTTCTGGCTGTATCGTTTGCTGACAGCGCACGGCATCGCCGCGTATGTGCTTGAGCCCACGAGCATTCTGGTCAATCGTCGCGCACGTCGGGCCA
AGACGGACCGTCTCGACGCGGAAGGCATGCTGCGTGTTCTTGCGGCATGGCTTAATGGTGATCGCCAGATATGCAGCATGGTGCGTGTGCCGACGCCCGA
CGAGGAGGATGCCAAACGTACACACCGCGAACGCGAACACCTTGTTCAGGAAAGGCTGCGTATCGAAAACAGAATAGAGGCGCTGCTGTTTACCCAGGGC
ATCCGGGGTAGACCGTCGTTACGGTCCTGGGAACGCGACGTCGCCGCGTTGCGCACGGGCGACGGGCGGGAACTGCCGCCGTTCCTTCGTGCTGAACTCG
ACCGCCTGCGTCGTCGGCTTCTCCTGGCGTTGGAACTGATCCGAGAACTGGAAACTGAACGGGCCAAGACACTGGACGCCGCAGCGATGGATGACCGTGT
GACTCAAAAGATCGTCTCGCTGAAACAGATCCGCGGCATCGGCGAGAATTTCGCTGCCGTTCTCGTTCGGGAGGTGTTCTATCGCCGCTTCGACAACCGT
CGCCAACTGGCCAGTTACGTCGGCATTACGCCTATGCCTTATCAAAGTGGCAGCATGGATCGTGATCGAAGCATCAGCCGGGCCGGAAACCCGCGAGCGC
GGACGGCGATGATCCAACTCGCCTGGCTTTGGCTACGCTATCAGCCCGCAAGCGGGCTCGCCTCATGGTTTCGTGAGCGCGTCGGCACCTTGAAAGGGCG
GACACGCCGCATTGCGATCGTGGCCATGGCGAGAAAGCTTCTGATTGCGCTTTGGCGCTATGTGGAGACAGGATCGATACCGGACGGTCTCGCATTCGGC
ACCGGAACGACCGCAGAATAGATAGACAGAAGTGCCGCGGGCCGATCAGTCGTCGGCGGCGATACGGGGAACGCGACCGTCTTCTTCTTTGGTAGCGCCA
CGCTACCGCGTTTCAGGTGGGTCGCGCGTCGTCGGGGCAGAGCCTCGTGCAAGAGGCATTATGGTGCGGGTCGCTCGCGCGATCCGACCGCATGTAAGGT
GATGCAGCCGCTGCTGCGATACGGAAGGGCCCCGAGCCCATAAAAGCACCTGACTTAAGACCATAGGGACAGGAGACACGCCATCGCGAAAATACGTTGA
CACCTGAACCCTCATGTA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1140 bp | 379 aa | 82 | 1221 | + | No |
Chemistry : DEDD
ORF sequence :
MSSENAIHIAIELSVSSWLVAVKTISGATKSRLHRLEGGDASGLLKLIAELQTRASTQPGDVAEVSCCFEAGRDGFWLYRLLTAHGIAAYVLEPTSILVN
RRARRAKTDRLDAEGMLRVLAAWLNGDRQICSMVRVPTPDEEDAKRTHREREHLVQERLRIENRIEALLFTQGIRGRPSLRSWERDVAALRTGDGRELPP
FLRAELDRLRRRLLLALELIRELETERAKTLDAAAMDDRVTQKIVSLKQIRGIGENFAAVLVREVFYRRFDNRRQLASYVGITPMPYQSGSMDRDRSISR
AGNPRARTAMIQLAWLWLRYQPASGLASWFRERVGTLKGRTRRIAIVAMARKLLIALWRYVETGSIPDGLAFGTGTTAE
RRARRAKTDRLDAEGMLRVLAAWLNGDRQICSMVRVPTPDEEDAKRTHREREHLVQERLRIENRIEALLFTQGIRGRPSLRSWERDVAALRTGDGRELPP
FLRAELDRLRRRLLLALELIRELETERAKTLDAAAMDDRVTQKIVSLKQIRGIGENFAAVLVREVFYRRFDNRRQLASYVGITPMPYQSGSMDRDRSISR
AGNPRARTAMIQLAWLWLRYQPASGLASWFRERVGTLKGRTRRIAIVAMARKLLIALWRYVETGSIPDGLAFGTGTTAE
Blast result :
Comments
ISGdi7 is 43% aa similar to ISVisp2.
References
1] Miriam land (2008) Direct submission.