ISYps2
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Yersinia pseudotuberculosis | Yersinia pseudotuberculosis plasmid pGDT4 |
DNA section
IS Length : 1577 bp
Ends
Left end : TCCGTGATACCTATTGAGTGCATCCAGCTAGCGTTTAAGTCAGCTATTTTCTACAACTTGTAATGTCTGTGTCTGTCACAAGTGGAGAAAATCAATGAAC
Right end : ATGAGCAATATCGGATACAAAAATGAACCATCGTCTTCGTATTAGATGGCAGGATCCCTGCGTGTAAAATAGTTGACTCAGACGGTAGTCCGTTATCAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCAATCAGA | CGGTGATCAT | 0 |
DNA sequence
TCCGTGATACCTATTGAGTGCATCCAGCTAGCGTTTAAGTCAGCTATTTTCTACAACTTGTAATGTCTGTGTCTGTCACAAGTGGAGAAAATCAATGAAC
ACTTTAGTTAGTAACATCGGTGTGTCGGGGACTCTGATTGCCCTAGATATCGCTAAAAAACATCACGATGCAAAAATTCGGCACCCGGATGGACGAACAT
CCTACCTGCGTATTGAAAATTCCCTGGAAGGGTTCAACCGACTGCTTGCGCTCACCGCTTCACCCCATGAAGATATTATCGCTGCCTTTGAACCTACAGC
TGATTATCACCGCAACATCGCATGGTGGTTACATAAGCAGGGAGTTCAGTGCCATCTTGTTTCATCTATCAGATGTGCGCGAGCTCGTGAGATGCTGTTT
AAGACCTGGGATAAAAATGATCGCAAAGATGCCAGTGTCATTATGTATTTGCTCGAACAAGGATTATCTTCACCATTTTATGATCCTCTGGCGAATGGCA
TTATCGATATACAGGAGATATCAAACACATATCATCAGGTTACTCTGGCACTAACACGATGTCTGAACAGCCTGGTTAACCACTATCTGACCCTTTATTT
TCCCGAAGCTGAGCAGTTTCTGCATATGTCCCGGGCAGAGTGGTTCTGCCAGTTTTTACTTCAATTCCCTACACCGTCTTGTATCACGTCACTGAACCGG
GATGTGTTTGTAAAACAGTCATGGGATGTTGTTGGCCGGAAACAGTATAAACAGCAGTTTCTTGAACATCTCTATGATGTTGCTGCGGATTCCATTGCAT
TACCGTTGTCAGAAGATTCTCTGGCAGTGACCACGTTCAGATTGCAGCTTCACCGTTATGTCGGGCTTTCGGCTCAACGATTGCAGCTTGAAAAGCAGTC
AGAAAAATATTTACAGGAACGGAGCGACTACAGACACTTACGTACGATCCCGGGTATTGGTGCTGTCATTGCCCTTATGATAATTGCCGAAAGTGGTGAT
TTGACACGTTTCGCTCATTATCGGCAGTACCTCAACTTTTGCGGTTTTAATCTTTCCGCCAGTCAGAGCGGACAAAAGCACAGTGGTTACAGATTGTCGA
AACGTGGAAATGCGCGGTTAAGATATGCCTTCTGGCTTGCCGCCACCGTAGCCGTAAGAACGAGAGAAAACAGCTTCCGCTACAAATATGAACGTTATAT
TCGGGAAAATGGAGATAAGCCAGATCAGAAAAGAAAAGCCATGACGGCTGTGGCAACAAAAGTCGCCAGAGTGGCGCATGCAATTGTAAAGCAGGATATT
GATTACAAAGGGTATTATGAAATAAGCCATGGGACGTGATTCAACGGGCCGTAAGGCGCATCGCGACCATTAGATAACGCTCAACGTCCATGGTTTCCCA
AAATGCTGTGTTAAGTCCTGTCGGGCCATTTCGGACCCTTGTATGTCATGGTAAGCATATTTATAAGCCGAAAGGAGATGAGCAATATCGGATACAAAAA
TGAACCATCGTCTTCGTATTAGATGGCAGGATCCCTGCGTGTAAAATAGTTGACTCAGACGGTAGTCCGTTATCAGA
ACTTTAGTTAGTAACATCGGTGTGTCGGGGACTCTGATTGCCCTAGATATCGCTAAAAAACATCACGATGCAAAAATTCGGCACCCGGATGGACGAACAT
CCTACCTGCGTATTGAAAATTCCCTGGAAGGGTTCAACCGACTGCTTGCGCTCACCGCTTCACCCCATGAAGATATTATCGCTGCCTTTGAACCTACAGC
TGATTATCACCGCAACATCGCATGGTGGTTACATAAGCAGGGAGTTCAGTGCCATCTTGTTTCATCTATCAGATGTGCGCGAGCTCGTGAGATGCTGTTT
AAGACCTGGGATAAAAATGATCGCAAAGATGCCAGTGTCATTATGTATTTGCTCGAACAAGGATTATCTTCACCATTTTATGATCCTCTGGCGAATGGCA
TTATCGATATACAGGAGATATCAAACACATATCATCAGGTTACTCTGGCACTAACACGATGTCTGAACAGCCTGGTTAACCACTATCTGACCCTTTATTT
TCCCGAAGCTGAGCAGTTTCTGCATATGTCCCGGGCAGAGTGGTTCTGCCAGTTTTTACTTCAATTCCCTACACCGTCTTGTATCACGTCACTGAACCGG
GATGTGTTTGTAAAACAGTCATGGGATGTTGTTGGCCGGAAACAGTATAAACAGCAGTTTCTTGAACATCTCTATGATGTTGCTGCGGATTCCATTGCAT
TACCGTTGTCAGAAGATTCTCTGGCAGTGACCACGTTCAGATTGCAGCTTCACCGTTATGTCGGGCTTTCGGCTCAACGATTGCAGCTTGAAAAGCAGTC
AGAAAAATATTTACAGGAACGGAGCGACTACAGACACTTACGTACGATCCCGGGTATTGGTGCTGTCATTGCCCTTATGATAATTGCCGAAAGTGGTGAT
TTGACACGTTTCGCTCATTATCGGCAGTACCTCAACTTTTGCGGTTTTAATCTTTCCGCCAGTCAGAGCGGACAAAAGCACAGTGGTTACAGATTGTCGA
AACGTGGAAATGCGCGGTTAAGATATGCCTTCTGGCTTGCCGCCACCGTAGCCGTAAGAACGAGAGAAAACAGCTTCCGCTACAAATATGAACGTTATAT
TCGGGAAAATGGAGATAAGCCAGATCAGAAAAGAAAAGCCATGACGGCTGTGGCAACAAAAGTCGCCAGAGTGGCGCATGCAATTGTAAAGCAGGATATT
GATTACAAAGGGTATTATGAAATAAGCCATGGGACGTGATTCAACGGGCCGTAAGGCGCATCGCGACCATTAGATAACGCTCAACGTCCATGGTTTCCCA
AAATGCTGTGTTAAGTCCTGTCGGGCCATTTCGGACCCTTGTATGTCATGGTAAGCATATTTATAAGCCGAAAGGAGATGAGCAATATCGGATACAAAAA
TGAACCATCGTCTTCGTATTAGATGGCAGGATCCCTGCGTGTAAAATAGTTGACTCAGACGGTAGTCCGTTATCAGA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1245 bp | 414 aa | 95 | 1339 | + | No |
Chemistry : DEDD
ORF sequence :
MNTLVSNIGVSGTLIALDIAKKHHDAKIRHPDGRTSYLRIENSLEGFNRLLALTASPHEDIIAAFEPTADYHRNIAWWLHKQGVQCHLVSSIRCARAREM
LFKTWDKNDRKDASVIMYLLEQGLSSPFYDPLANGIIDIQEISNTYHQVTLALTRCLNSLVNHYLTLYFPEAEQFLHMSRAEWFCQFLLQFPTPSCITSL
NRDVFVKQSWDVVGRKQYKQQFLEHLYDVAADSIALPLSEDSLAVTTFRLQLHRYVGLSAQRLQLEKQSEKYLQERSDYRHLRTIPGIGAVIALMIIAES
GDLTRFAHYRQYLNFCGFNLSASQSGQKHSGYRLSKRGNARLRYAFWLAATVAVRTRENSFRYKYERYIRENGDKPDQKRKAMTAVATKVARVAHAIVKQ
DIDYKGYYEISHGT
LFKTWDKNDRKDASVIMYLLEQGLSSPFYDPLANGIIDIQEISNTYHQVTLALTRCLNSLVNHYLTLYFPEAEQFLHMSRAEWFCQFLLQFPTPSCITSL
NRDVFVKQSWDVVGRKQYKQQFLEHLYDVAADSIALPLSEDSLAVTTFRLQLHRYVGLSAQRLQLEKQSEKYLQERSDYRHLRTIPGIGAVIALMIIAES
GDLTRFAHYRQYLNFCGFNLSASQSGQKHSGYRLSKRGNARLRYAFWLAATVAVRTRENSFRYKYERYIRENGDKPDQKRKAMTAVATKVARVAHAIVKQ
DIDYKGYYEISHGT
Blast result :
Comments
ISYps2 is 46% aa similar to ISChy2.
References
1] Didier MAZEL (2008) Direct Submission