ISYps2

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Yersinia pseudotuberculosis
Yersinia pseudotuberculosis plasmid pGDT4
DNA section
IS Length : 1577 bp

Ends


Left end : TCCGTGATACCTATTGAGTGCATCCAGCTAGCGTTTAAGTCAGCTATTTTCTACAACTTGTAATGTCTGTGTCTGTCACAAGTGGAGAAAATCAATGAAC
Right end : ATGAGCAATATCGGATACAAAAATGAACCATCGTCTTCGTATTAGATGGCAGGATCCCTGCGTGTAAAATAGTTGACTCAGACGGTAGTCCGTTATCAGA

Insertion site


Left flankDirect repeatRight flankDR Length
TTCAATCAGACGGTGATCAT0

DNA sequence

TCCGTGATACCTATTGAGTGCATCCAGCTAGCGTTTAAGTCAGCTATTTTCTACAACTTGTAATGTCTGTGTCTGTCACAAGTGGAGAAAATCAATGAAC
ACTTTAGTTAGTAACATCGGTGTGTCGGGGACTCTGATTGCCCTAGATATCGCTAAAAAACATCACGATGCAAAAATTCGGCACCCGGATGGACGAACAT
CCTACCTGCGTATTGAAAATTCCCTGGAAGGGTTCAACCGACTGCTTGCGCTCACCGCTTCACCCCATGAAGATATTATCGCTGCCTTTGAACCTACAGC
TGATTATCACCGCAACATCGCATGGTGGTTACATAAGCAGGGAGTTCAGTGCCATCTTGTTTCATCTATCAGATGTGCGCGAGCTCGTGAGATGCTGTTT
AAGACCTGGGATAAAAATGATCGCAAAGATGCCAGTGTCATTATGTATTTGCTCGAACAAGGATTATCTTCACCATTTTATGATCCTCTGGCGAATGGCA
TTATCGATATACAGGAGATATCAAACACATATCATCAGGTTACTCTGGCACTAACACGATGTCTGAACAGCCTGGTTAACCACTATCTGACCCTTTATTT
TCCCGAAGCTGAGCAGTTTCTGCATATGTCCCGGGCAGAGTGGTTCTGCCAGTTTTTACTTCAATTCCCTACACCGTCTTGTATCACGTCACTGAACCGG
GATGTGTTTGTAAAACAGTCATGGGATGTTGTTGGCCGGAAACAGTATAAACAGCAGTTTCTTGAACATCTCTATGATGTTGCTGCGGATTCCATTGCAT
TACCGTTGTCAGAAGATTCTCTGGCAGTGACCACGTTCAGATTGCAGCTTCACCGTTATGTCGGGCTTTCGGCTCAACGATTGCAGCTTGAAAAGCAGTC
AGAAAAATATTTACAGGAACGGAGCGACTACAGACACTTACGTACGATCCCGGGTATTGGTGCTGTCATTGCCCTTATGATAATTGCCGAAAGTGGTGAT
TTGACACGTTTCGCTCATTATCGGCAGTACCTCAACTTTTGCGGTTTTAATCTTTCCGCCAGTCAGAGCGGACAAAAGCACAGTGGTTACAGATTGTCGA
AACGTGGAAATGCGCGGTTAAGATATGCCTTCTGGCTTGCCGCCACCGTAGCCGTAAGAACGAGAGAAAACAGCTTCCGCTACAAATATGAACGTTATAT
TCGGGAAAATGGAGATAAGCCAGATCAGAAAAGAAAAGCCATGACGGCTGTGGCAACAAAAGTCGCCAGAGTGGCGCATGCAATTGTAAAGCAGGATATT
GATTACAAAGGGTATTATGAAATAAGCCATGGGACGTGATTCAACGGGCCGTAAGGCGCATCGCGACCATTAGATAACGCTCAACGTCCATGGTTTCCCA
AAATGCTGTGTTAAGTCCTGTCGGGCCATTTCGGACCCTTGTATGTCATGGTAAGCATATTTATAAGCCGAAAGGAGATGAGCAATATCGGATACAAAAA
TGAACCATCGTCTTCGTATTAGATGGCAGGATCCCTGCGTGTAAAATAGTTGACTCAGACGGTAGTCCGTTATCAGA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1245 bp414 aa951339+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MNTLVSNIGVSGTLIALDIAKKHHDAKIRHPDGRTSYLRIENSLEGFNRLLALTASPHEDIIAAFEPTADYHRNIAWWLHKQGVQCHLVSSIRCARAREM
LFKTWDKNDRKDASVIMYLLEQGLSSPFYDPLANGIIDIQEISNTYHQVTLALTRCLNSLVNHYLTLYFPEAEQFLHMSRAEWFCQFLLQFPTPSCITSL
NRDVFVKQSWDVVGRKQYKQQFLEHLYDVAADSIALPLSEDSLAVTTFRLQLHRYVGLSAQRLQLEKQSEKYLQERSDYRHLRTIPGIGAVIALMIIAES
GDLTRFAHYRQYLNFCGFNLSASQSGQKHSGYRLSKRGNARLRYAFWLAATVAVRTRENSFRYKYERYIRENGDKPDQKRKAMTAVATKVARVAHAIVKQ
DIDYKGYYEISHGT

 

Blast result :
Comments
ISYps2 is 46% aa similar to ISChy2.
References
1] Didier MAZEL (2008) Direct Submission