ISGdi3
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Gluconacetobacter diazotrophicus | Gluconacetobacter diazotrophicus PAl 5 |
DNA section
IS Length : 912 bp
Ends
IR Length : 21/29
IRL : GTCTGACTTAAAATGAGTTGAGTGATTTCAGCGGGTTATGATTCATGGGT
IRR : GCCTGAATCAGAAAGCGGTTTGATTGATTTTCCGTAGAACTCTGCGGATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAATTGAATTCAAGCTGACT | TCTGAGAGAGATGGGGAA | 0 |
DNA sequence
GTCTGACTTAAAATGAGTTGAGTGATTTCAGCGGGTTATGATTCATGGGTTTGCGACGACCTGATGAGATCAAGATGGCCTGGACTGAAATCACCCGCGC
GCAGTATCGCCGGGACGACCTTGAGTATGCAAGTGACCTGCGCGATGCGGAATGGGCGCTGATTGCGCCGTTGATGCCCGAGAGGAAACGTCTGGGGAGA
CCGCGCCGCACCGATTTGCGCCGCGTCATGGAAGCGATCCTCTATATCGTCACGACCGGCTGCCAATGGCGGCAACTGCCCCGGCACTTTCCTGCCTTCA
CGACCGTGCAAGGCTATTTCTATCGGTGGATACGCGAGGGACGGTGGGAGGCCATGAACCATATTCTCGTGATCCTGTCGCGTGAACAAGATGGACGGGA
CGCCACGCCTTCGGTGGGCATTATCGACAGCCAGTCGGTGAAAACCGCAGAAAATAGCGGCCCGCGCGGCTATGACGCGGGCAAGAAGATCAAGGGACGC
AAGCGGCATATCGCCACCGACACGCTGGGTCATGTCGTGGCGGCTGTCGTGCATCCCGCCGACGTTCAGGATCGTGACGGCGCGCCGCTGGTAGCGACCA
GGATACGCTCATTGTTCCCCTGGCTTCGCCATCTGATCGGCGACGGGGGATATGCCGGAGAGAAGTTGCGTGGTGCGCTGGCTGAACTCGGCCGATGGAC
GATCGAGATCGTCAAACGCAGCGATCGGGCCCAAGGCTTCGTCGTCCTGCCCAAACGCTGGATCGTGGAGCGTAGCTTTGCATGGCTCGGTCGCTGCCGC
CGCCTCACGAGGGATGTCGAGGCAACAATCTCCTCATCCCACGCGTGGCTGATGATCGCTCATATCCGCAGAGTTCTACGGAAAATCAATCAAACCGCTT
TCTGATTCAGGC
GCAGTATCGCCGGGACGACCTTGAGTATGCAAGTGACCTGCGCGATGCGGAATGGGCGCTGATTGCGCCGTTGATGCCCGAGAGGAAACGTCTGGGGAGA
CCGCGCCGCACCGATTTGCGCCGCGTCATGGAAGCGATCCTCTATATCGTCACGACCGGCTGCCAATGGCGGCAACTGCCCCGGCACTTTCCTGCCTTCA
CGACCGTGCAAGGCTATTTCTATCGGTGGATACGCGAGGGACGGTGGGAGGCCATGAACCATATTCTCGTGATCCTGTCGCGTGAACAAGATGGACGGGA
CGCCACGCCTTCGGTGGGCATTATCGACAGCCAGTCGGTGAAAACCGCAGAAAATAGCGGCCCGCGCGGCTATGACGCGGGCAAGAAGATCAAGGGACGC
AAGCGGCATATCGCCACCGACACGCTGGGTCATGTCGTGGCGGCTGTCGTGCATCCCGCCGACGTTCAGGATCGTGACGGCGCGCCGCTGGTAGCGACCA
GGATACGCTCATTGTTCCCCTGGCTTCGCCATCTGATCGGCGACGGGGGATATGCCGGAGAGAAGTTGCGTGGTGCGCTGGCTGAACTCGGCCGATGGAC
GATCGAGATCGTCAAACGCAGCGATCGGGCCCAAGGCTTCGTCGTCCTGCCCAAACGCTGGATCGTGGAGCGTAGCTTTGCATGGCTCGGTCGCTGCCGC
CGCCTCACGAGGGATGTCGAGGCAACAATCTCCTCATCCCACGCGTGGCTGATGATCGCTCATATCCGCAGAGTTCTACGGAAAATCAATCAAACCGCTT
TCTGATTCAGGC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
831 bp | 276 aa | 75 | 905 | + | No |
Chemistry : DDE
ORF sequence :
MAWTEITRAQYRRDDLEYASDLRDAEWALIAPLMPERKRLGRPRRTDLRRVMEAILYIVTTGCQWRQLPRHFPAFTTVQGYFYRWIREGRWEAMNHILVI
LSREQDGRDATPSVGIIDSQSVKTAENSGPRGYDAGKKIKGRKRHIATDTLGHVVAAVVHPADVQDRDGAPLVATRIRSLFPWLRHLIGDGGYAGEKLRG
ALAELGRWTIEIVKRSDRAQGFVVLPKRWIVERSFAWLGRCRRLTRDVEATISSSHAWLMIAHIRRVLRKINQTAF
LSREQDGRDATPSVGIIDSQSVKTAENSGPRGYDAGKKIKGRKRHIATDTLGHVVAAVVHPADVQDRDGAPLVATRIRSLFPWLRHLIGDGGYAGEKLRG
ALAELGRWTIEIVKRSDRAQGFVVLPKRWIVERSFAWLGRCRRLTRDVEATISSSHAWLMIAHIRRVLRKINQTAF
Blast result :
Comments
ISGdi3 is 98% aa similar to IS1032.
References
1] Miriam Land (2008) Direct submission.