ISGdi6
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Gluconacetobacter diazotrophicus | Gluconacetobacter diazotrophicus PAl 5 |
DNA section
IS Length : 1051 bp
Ends
IR Length : 14
IRL : GAGCGTGATGATTTCGGTCTGAATCGGAATATGGGTACCCAGATTGCCGA
IRR : GAGCGTGATGATTTTAGGTTGGTCCATATCCTGAGTTTATGAAATAATTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCGAGGCTGACCAACGT | TA | GCAGGCGGTCGAGGCTT | 2 |
ACGATGGAGACATTCTTT | TA | ATAAGAACGGATGTGCA | 2 |
TTTGAAAGCC TGGAACCC | TA | ATCCCCATGGACATGTT | 2 |
GCTGAGTTGC CGTGCGAT | TA | GAGACACGATTTTTCTT | 2 |
CCCAATCCGA CAGCCTGC | TA | GTTCTTGCGGCGGGTGG | 2 |
ACGATGGAGA CATTCTTT | TA | ATAAGAACGGATGTGCAT | 2 |
DNA sequence
GAGCGTGATGATTTCGGTCTGAATCGGAATATGGGTACCCAGATTGCCGAAAATCTGATTCAACATGCTGTCTGGATTGGAGGCCAGCATGGATGGCGCG
TCCTTATTCGATGGATCTTCGCGACCGGGTTGTGGCAGCCGTGGAGACAGACGGCCTCTCCTGCCACGAGGCCGCGAAGCGCTACGGTGTAGCACCCAGC
ACCGCGATCCGGTGGATGCAGAGCTTTCGGCGGACCGGCAGCGTTTCCCCTGGCCAGATGGGCGGCCACAAGCCGAAACGGCTGACGGGTGCGCATCGGG
AATGGCTGATCGAGCGTTGCAAGGCGGGGGGCTTTACCCTGCGGGGCTTGGTCGCAGAACTTGCCGGGCGCGGGCTCAGGGTCGATTATCGCTCTGTGTG
GGTCTTCGTCCACGACGAGGGGCTCAGCTTCAAAAAAAACACTCGTCGCAGCCGAACAGGACCGTCCTGATGTCGCCCGACACCGGGCGCGATGGCAAAA
ATACCAACACCTCATAGATCCCGCCCGCCTGGTGTTCATCGATGAAACCTGGACCAAAACCAATATGGCGCCGCTACGCGGCTGGGCGCCGCGTGGCGAA
CGGCTCCGGGCCAAAGTGCCTTGGGGTCATTGGAACACCATGACCTTTATTGCCGCCCTGCGGGTCGATCGGATCGATGCGCCGTGGCTGCTCGATGGTC
CGATCAACGGCGAAAGCTTCCGCATCTACGTCGAGAATGAACTCGTGCCGACGCTCAGGCCTGGTGACATCGTGATCGCTGACAACCTCGGCAGCCACAA
AAACAAGGCAGCACGCGCAGCCATCCGACAGGTCGGCGCGCGCCTGATCCTCCTGCCAAAATACTCCCCAGACCTGAATCCCATTGAACAGGTCTTTGCC
AAGCTCAAGCACCTGCTCCGCAAGGCCGCGGCTCGAAGCCGCGACGCAGTCAGTTCAACCATCGGCGAACTCCTGCGCAGCTACGCTCCCAGCGAATGCG
CCAATTATTTCATAAACTCAGGATATGGACCAACCTAAAATCATCACGCTC
TCCTTATTCGATGGATCTTCGCGACCGGGTTGTGGCAGCCGTGGAGACAGACGGCCTCTCCTGCCACGAGGCCGCGAAGCGCTACGGTGTAGCACCCAGC
ACCGCGATCCGGTGGATGCAGAGCTTTCGGCGGACCGGCAGCGTTTCCCCTGGCCAGATGGGCGGCCACAAGCCGAAACGGCTGACGGGTGCGCATCGGG
AATGGCTGATCGAGCGTTGCAAGGCGGGGGGCTTTACCCTGCGGGGCTTGGTCGCAGAACTTGCCGGGCGCGGGCTCAGGGTCGATTATCGCTCTGTGTG
GGTCTTCGTCCACGACGAGGGGCTCAGCTTCAAAAAAAACACTCGTCGCAGCCGAACAGGACCGTCCTGATGTCGCCCGACACCGGGCGCGATGGCAAAA
ATACCAACACCTCATAGATCCCGCCCGCCTGGTGTTCATCGATGAAACCTGGACCAAAACCAATATGGCGCCGCTACGCGGCTGGGCGCCGCGTGGCGAA
CGGCTCCGGGCCAAAGTGCCTTGGGGTCATTGGAACACCATGACCTTTATTGCCGCCCTGCGGGTCGATCGGATCGATGCGCCGTGGCTGCTCGATGGTC
CGATCAACGGCGAAAGCTTCCGCATCTACGTCGAGAATGAACTCGTGCCGACGCTCAGGCCTGGTGACATCGTGATCGCTGACAACCTCGGCAGCCACAA
AAACAAGGCAGCACGCGCAGCCATCCGACAGGTCGGCGCGCGCCTGATCCTCCTGCCAAAATACTCCCCAGACCTGAATCCCATTGAACAGGTCTTTGCC
AAGCTCAAGCACCTGCTCCGCAAGGCCGCGGCTCGAAGCCGCGACGCAGTCAGTTCAACCATCGGCGAACTCCTGCGCAGCTACGCTCCCAGCGAATGCG
CCAATTATTTCATAAACTCAGGATATGGACCAACCTAAAATCATCACGCTC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
378 bp | 125 aa | 93 | 470 | + | No |
Description : First part of the transposase
ORF sequence :
MARPYSMDLRDRVVAAVETDGLSCHEAAKRYGVAPSTAIRWMQSFRRTGSVSPGQMGGHKPKRLTGAHREWLIERCKAGGFTLRGLVAELAGRGLRVDYR
SVWVFVHDEGLSFKKNTRRSRTGPS
SVWVFVHDEGLSFKKNTRRSRTGPS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
729 bp | 242 aa | 310 | 1038 | + | No |
Description : Second part of the transposase
ORF sequence :
SSVARRGALPCGAWSQNLPGAGSGSIIALCGSSSTTRGSASKKTLVAAEQDRPDVARHRARWQKYQHLIDPARLVFIDETWTKTNMAPLRGWAPRGERLR
AKVPWGHWNTMTFIAALRVDRIDAPWLLDGPINGESFRIYVENELVPTLRPGDIVIADNLGSHKNKAARAAIRQVGARLILLPKYSPDLNPIEQVFAKLK
HLLRKAAARSRDAVSSTIGELLRSYAPSECANYFINSGYGPT
AKVPWGHWNTMTFIAALRVDRIDAPWLLDGPINGESFRIYVENELVPTLRPGDIVIADNLGSHKNKAARAAIRQVGARLILLPKYSPDLNPIEQVFAKLK
HLLRKAAARSRDAVSSTIGELLRSYAPSECANYFINSGYGPT
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
946 bp | 314 aa | 93 | 1038 | + | Yes |
Chemistry : DDE
ORF sequence :
MARPYSMDLRDRVVAAVETDGLSCHEAAKRYGVAPSTAIRWMQSFRRTGSVSPGQMGGHKPKRLTGAHREWLIERCKAGGFTLRGLVAELAGRGLRVDYR
SVWVFVHDEGLSFKKTLVAAEQDRPDVARHRARWQKYQHLIDPARLVFIDETWTKTNMAPLRGWAPRGERLRAKVPWGHWNTMTFIAALRVDRIDAPWLL
DGPINGESFRIYVENELVPTLRPGDIVIADNLGSHKNKAARAAIRQVGARLILLPKYSPDLNPIEQVFAKLKHLLRKAAARSRDAVSSTIGELLRSYAPS
ECANYFINSGYGPT
SVWVFVHDEGLSFKKTLVAAEQDRPDVARHRARWQKYQHLIDPARLVFIDETWTKTNMAPLRGWAPRGERLRAKVPWGHWNTMTFIAALRVDRIDAPWLL
DGPINGESFRIYVENELVPTLRPGDIVIADNLGSHKNKAARAAIRQVGARLILLPKYSPDLNPIEQVFAKLKHLLRKAAARSRDAVSSTIGELLRSYAPS
ECANYFINSGYGPT
Blast result :
Comments
ISGdi6 is 81% aa similar to ISRm2011-2. The third ORF is a putative ORFAB transposase reconstructed in silico by possible -1 frameshift.
References
1] Miriam Land (2008) Direct submission.