ISGdi8
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Gluconacetobacter diazotrophicus | Gluconacetobacter diazotrophicus PAl 5 |
DNA section
IS Length : 1356 bp
Ends
IR Length : 29
IRL : GGCTGTGTCCCGAGGTGTGGTGTAGGAGCGAGTCTGGCTGCTGAGGCGGC
IRR : GGCTGTGTCCCGAGGTGTGGTGTAGGAGCACCGTTCCTCGAAGGGTTCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGACATCGA | TGCGACGC | TCGTAATCGCGC | 8 |
CGCTTCCTGTCG | CCACGCTG | CTGTCCGTTCAA | 8 |
GCTAATTATAGA | GACCGGAC | TCGATGCCATAC | 8 |
GCCGCTTGCTGTTGGGATTG | TGATGGAAAGCAGGAAAAAG | 0 | |
GGCCCCCCTGG | CTCATCGAA | AGAGACTTGAG | 9 |
TCGGGAAACC TCGTCTGCAC | TTCTGCACTCCCGC AAGCAA | 0 | |
AATGCATGGTGC | TGATGGAA | AGCAGGAAAAAG | 8 |
GCCGCTTGCT GTTGGGATTG | GCGCAGGGCGTTGC CCCGCA | 0 | |
TGGCGCCAGGTC | GGTGAATC | GCTCGCCACGAC | 8 |
GGCCCCCCTGG | CTCATCGAA | AGAGACTTGAG | 9 |
DNA sequence
GGCTGTGTCCCGAGGTGTGGTGTAGGAGCGAGTCTGGCTGCTGAGGCGGCCATCGCCGGTCTTTGATAGGGTTCGGGTGCGAACTGAACCTGAAGGACCT
GACGATGACCGACGAGAAGATGGCGCTGCTGGAGCTTGTGGAGCAAGCGTCGGATGGCGATTTTGTTCGTGAGATGCTGGCGTTCGCTGCCGATCGGATG
ATGGAGATGGAGGTTGAGGCCCGGACCGGTGCGCCGCTTGGCGCGCGTTCGGCCTCCCGCTCGACCCAACGCAACGGCTACCGCGCTCGGAACTGGGACA
CCCGGGCGGGCACGGTGGAGCTTGCGATCCCGAAGCTACGCAAGGGCAGCTATTTCCCGACCTTCCTGGAGCCGCGGAAAACGGCGGAAAAGGCACTGCT
GGCGGTCATCCAGGAAGCCTACGTCCAGGGTATTTCCACGCGATCGGTCGATGATCTCGTCCGCGCGATGGGCGCCGGGGGCATCTCCAAAAGCCAGGTC
AGTCGTCTGGTGGGCGAGATCGACGAACGGGTCAACAGCTTCCTGTCTCGGCCGATCGAGGGCGAATGGCCGTATCTCTGGATCGACGCCACCTATCTGA
AACTGCGCCAGGGTGGCCGGATTGTCTCGATTGCCGTGATAATCGCCGTGGGCGTAAATACGGACGGCCGTCGTGAGGTGCTCGGCGTGGCGACGGGACC
GTCCGAAGCGGAAGCGTTCTGGACGGATTTCCTGCGCTCCCTGGCCGATCGCGGCCTGCGCGGCGTGAAGTTGGTGGTGGCCGACGCGCATGCCGGACTG
CGGGCCGCGGCCGGTCGCGTGTTCAATGCGACCCTGCAACGCTGCCGGGTGCACTGGCTGCGCAATGCGCTCGCCCATGCCCATGCGAAGCAGCGTCCTG
CCATCTCGGCCCTGTTGCGCACGATCTTCACGCAGGAAACCGCCGAGGATGCGTCACGCCAATGGCGGCACGTCACCGACAAGCTGCGCGAAGGCTTTCC
GAAGCTGGCCGAATTCATGAAGCGGACGGAAGTGGACGTGCTTGCCTACATGGGCTTTCCTCGGGAGCATTGGACGCAAATCTCGTCGACGAACCCGATC
GAGCGGGTGAACAGGGAGATCAAGCGTCGCTGCGACGTCATCGGCATTTTCCCCAACGATGCCGCCATTATCCGCCTCGTCGGCGCGCTGATGCTCGAAC
AGAACGACGAGTGGGCGGTCTGCCGACGTTACATGACGCTGGAAGGACTGGCCGCCATCAGCCATAATCCCACAATCAGCCTGCCCGCCGTGGCCGCCTG
ATAACCTCGAACCCTTCGAGGAACGGTGCTCCTACACCACACCTCGGGACACAGCC
GACGATGACCGACGAGAAGATGGCGCTGCTGGAGCTTGTGGAGCAAGCGTCGGATGGCGATTTTGTTCGTGAGATGCTGGCGTTCGCTGCCGATCGGATG
ATGGAGATGGAGGTTGAGGCCCGGACCGGTGCGCCGCTTGGCGCGCGTTCGGCCTCCCGCTCGACCCAACGCAACGGCTACCGCGCTCGGAACTGGGACA
CCCGGGCGGGCACGGTGGAGCTTGCGATCCCGAAGCTACGCAAGGGCAGCTATTTCCCGACCTTCCTGGAGCCGCGGAAAACGGCGGAAAAGGCACTGCT
GGCGGTCATCCAGGAAGCCTACGTCCAGGGTATTTCCACGCGATCGGTCGATGATCTCGTCCGCGCGATGGGCGCCGGGGGCATCTCCAAAAGCCAGGTC
AGTCGTCTGGTGGGCGAGATCGACGAACGGGTCAACAGCTTCCTGTCTCGGCCGATCGAGGGCGAATGGCCGTATCTCTGGATCGACGCCACCTATCTGA
AACTGCGCCAGGGTGGCCGGATTGTCTCGATTGCCGTGATAATCGCCGTGGGCGTAAATACGGACGGCCGTCGTGAGGTGCTCGGCGTGGCGACGGGACC
GTCCGAAGCGGAAGCGTTCTGGACGGATTTCCTGCGCTCCCTGGCCGATCGCGGCCTGCGCGGCGTGAAGTTGGTGGTGGCCGACGCGCATGCCGGACTG
CGGGCCGCGGCCGGTCGCGTGTTCAATGCGACCCTGCAACGCTGCCGGGTGCACTGGCTGCGCAATGCGCTCGCCCATGCCCATGCGAAGCAGCGTCCTG
CCATCTCGGCCCTGTTGCGCACGATCTTCACGCAGGAAACCGCCGAGGATGCGTCACGCCAATGGCGGCACGTCACCGACAAGCTGCGCGAAGGCTTTCC
GAAGCTGGCCGAATTCATGAAGCGGACGGAAGTGGACGTGCTTGCCTACATGGGCTTTCCTCGGGAGCATTGGACGCAAATCTCGTCGACGAACCCGATC
GAGCGGGTGAACAGGGAGATCAAGCGTCGCTGCGACGTCATCGGCATTTTCCCCAACGATGCCGCCATTATCCGCCTCGTCGGCGCGCTGATGCTCGAAC
AGAACGACGAGTGGGCGGTCTGCCGACGTTACATGACGCTGGAAGGACTGGCCGCCATCAGCCATAATCCCACAATCAGCCTGCCCGCCGTGGCCGCCTG
ATAACCTCGAACCCTTCGAGGAACGGTGCTCCTACACCACACCTCGGGACACAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1197 bp | 398 aa | 105 | 1301 | + | No |
Chemistry : DDE
ORF sequence :
MTDEKMALLELVEQASDGDFVREMLAFAADRMMEMEVEARTGAPLGARSASRSTQRNGYRARNWDTRAGTVELAIPKLRKGSYFPTFLEPRKTAEKALLA
VIQEAYVQGISTRSVDDLVRAMGAGGISKSQVSRLVGEIDERVNSFLSRPIEGEWPYLWIDATYLKLRQGGRIVSIAVIIAVGVNTDGRREVLGVATGPS
EAEAFWTDFLRSLADRGLRGVKLVVADAHAGLRAAAGRVFNATLQRCRVHWLRNALAHAHAKQRPAISALLRTIFTQETAEDASRQWRHVTDKLREGFPK
LAEFMKRTEVDVLAYMGFPREHWTQISSTNPIERVNREIKRRCDVIGIFPNDAAIIRLVGALMLEQNDEWAVCRRYMTLEGLAAISHNPTISLPAVAA
VIQEAYVQGISTRSVDDLVRAMGAGGISKSQVSRLVGEIDERVNSFLSRPIEGEWPYLWIDATYLKLRQGGRIVSIAVIIAVGVNTDGRREVLGVATGPS
EAEAFWTDFLRSLADRGLRGVKLVVADAHAGLRAAAGRVFNATLQRCRVHWLRNALAHAHAKQRPAISALLRTIFTQETAEDASRQWRHVTDKLREGFPK
LAEFMKRTEVDVLAYMGFPREHWTQISSTNPIERVNREIKRRCDVIGIFPNDAAIIRLVGALMLEQNDEWAVCRRYMTLEGLAAISHNPTISLPAVAA
Blast result :
Comments
ISGdi8 is 78% aa similar to ISAli6.
References
1] Miriam Land. (2008) Direct submission.