ISGdi8

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Gluconacetobacter diazotrophicus
Gluconacetobacter diazotrophicus PAl 5
DNA section
IS Length : 1356 bp

Ends


IR Length : 29

IRL : GGCTGTGTCCCGAGGTGTGGTGTAGGAGCGAGTCTGGCTGCTGAGGCGGC
IRR : GGCTGTGTCCCGAGGTGTGGTGTAGGAGCACCGTTCCTCGAAGGGTTCGA

Insertion site


Left flankDirect repeatRight flankDR Length
GAGACATCGATGCGACGCTCGTAATCGCGC8
CGCTTCCTGTCGCCACGCTGCTGTCCGTTCAA8
GCTAATTATAGAGACCGGACTCGATGCCATAC8
GCCGCTTGCTGTTGGGATTGTGATGGAAAGCAGGAAAAAG0
GGCCCCCCTGGCTCATCGAAAGAGACTTGAG9
TCGGGAAACC TCGTCTGCACTTCTGCACTCCCGC AAGCAA0
AATGCATGGTGCTGATGGAAAGCAGGAAAAAG8
GCCGCTTGCT GTTGGGATTGGCGCAGGGCGTTGC CCCGCA0
TGGCGCCAGGTCGGTGAATCGCTCGCCACGAC8
GGCCCCCCTGGCTCATCGAAAGAGACTTGAG9

DNA sequence

GGCTGTGTCCCGAGGTGTGGTGTAGGAGCGAGTCTGGCTGCTGAGGCGGCCATCGCCGGTCTTTGATAGGGTTCGGGTGCGAACTGAACCTGAAGGACCT
GACGATGACCGACGAGAAGATGGCGCTGCTGGAGCTTGTGGAGCAAGCGTCGGATGGCGATTTTGTTCGTGAGATGCTGGCGTTCGCTGCCGATCGGATG
ATGGAGATGGAGGTTGAGGCCCGGACCGGTGCGCCGCTTGGCGCGCGTTCGGCCTCCCGCTCGACCCAACGCAACGGCTACCGCGCTCGGAACTGGGACA
CCCGGGCGGGCACGGTGGAGCTTGCGATCCCGAAGCTACGCAAGGGCAGCTATTTCCCGACCTTCCTGGAGCCGCGGAAAACGGCGGAAAAGGCACTGCT
GGCGGTCATCCAGGAAGCCTACGTCCAGGGTATTTCCACGCGATCGGTCGATGATCTCGTCCGCGCGATGGGCGCCGGGGGCATCTCCAAAAGCCAGGTC
AGTCGTCTGGTGGGCGAGATCGACGAACGGGTCAACAGCTTCCTGTCTCGGCCGATCGAGGGCGAATGGCCGTATCTCTGGATCGACGCCACCTATCTGA
AACTGCGCCAGGGTGGCCGGATTGTCTCGATTGCCGTGATAATCGCCGTGGGCGTAAATACGGACGGCCGTCGTGAGGTGCTCGGCGTGGCGACGGGACC
GTCCGAAGCGGAAGCGTTCTGGACGGATTTCCTGCGCTCCCTGGCCGATCGCGGCCTGCGCGGCGTGAAGTTGGTGGTGGCCGACGCGCATGCCGGACTG
CGGGCCGCGGCCGGTCGCGTGTTCAATGCGACCCTGCAACGCTGCCGGGTGCACTGGCTGCGCAATGCGCTCGCCCATGCCCATGCGAAGCAGCGTCCTG
CCATCTCGGCCCTGTTGCGCACGATCTTCACGCAGGAAACCGCCGAGGATGCGTCACGCCAATGGCGGCACGTCACCGACAAGCTGCGCGAAGGCTTTCC
GAAGCTGGCCGAATTCATGAAGCGGACGGAAGTGGACGTGCTTGCCTACATGGGCTTTCCTCGGGAGCATTGGACGCAAATCTCGTCGACGAACCCGATC
GAGCGGGTGAACAGGGAGATCAAGCGTCGCTGCGACGTCATCGGCATTTTCCCCAACGATGCCGCCATTATCCGCCTCGTCGGCGCGCTGATGCTCGAAC
AGAACGACGAGTGGGCGGTCTGCCGACGTTACATGACGCTGGAAGGACTGGCCGCCATCAGCCATAATCCCACAATCAGCCTGCCCGCCGTGGCCGCCTG
ATAACCTCGAACCCTTCGAGGAACGGTGCTCCTACACCACACCTCGGGACACAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1197 bp398 aa1051301+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTDEKMALLELVEQASDGDFVREMLAFAADRMMEMEVEARTGAPLGARSASRSTQRNGYRARNWDTRAGTVELAIPKLRKGSYFPTFLEPRKTAEKALLA
VIQEAYVQGISTRSVDDLVRAMGAGGISKSQVSRLVGEIDERVNSFLSRPIEGEWPYLWIDATYLKLRQGGRIVSIAVIIAVGVNTDGRREVLGVATGPS
EAEAFWTDFLRSLADRGLRGVKLVVADAHAGLRAAAGRVFNATLQRCRVHWLRNALAHAHAKQRPAISALLRTIFTQETAEDASRQWRHVTDKLREGFPK
LAEFMKRTEVDVLAYMGFPREHWTQISSTNPIERVNREIKRRCDVIGIFPNDAAIIRLVGALMLEQNDEWAVCRRYMTLEGLAAISHNPTISLPAVAA

 

Blast result :
Comments
ISGdi8 is 78% aa similar to ISAli6.
References
1] Miriam Land. (2008) Direct submission.