ISGdi2
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Gluconacetobacter diazotrophicus | Gluconacetobacter diazotrophicus |
DNA section
IS Length : 883 bp
Ends
IR Length : 18
IRL : GAGCCTGTTTGGAAAGTCGCTGAAGTGTGATTCAAGCTCTGGATGTGGAC
IRR : GAGCCTGTTTGGAAAGTCATGGATGAGCGTTTCTTCGGGTGAGATTGGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GAGCCTGTTTGGAAAGTCGCTGAAGTGTGATTCAAGCTCTGGATGTGGACGCCAGAGCAGAGAGGCCGCATGGCCAGGATTACCCGCAAGACGAAGCGTT
ATCCGTCTGATATGACGGAGGAGGAATGGGCGCGCATCGCGCCACTGATGCCCGAGCCGGGACGCACGGGGCGTCCGCGCGAGATCGAATTCCGCGAGGT
GATCAACGCGGTTCGTTACCTGGTTCGATCCGGCTGCGACTGGCGAATGCTGCCGATCCATTTCGGGCATTGGCGTACGGTCTATGGTTGGTTCAGGGAA
TTGGCCCGGCGGTTCCTGTTCCAGACCATTCATGATGTGGAACTGATGCTTGACCGGGAGCGCTCGGGCCGTGAAGCCAGCCCTTCGGCCGGAGTGATCG
ACAGCCAGAGCATCAAGGCGCCGCACGCGAAAACAAGAGGTTACGACGCTGGAAAGAAGATTGTCGGGCGCAAGCGGCATATCGCCGTGGATACGGACGG
ACGCCTGCTGATGGTCAACCTGACGCCGGCGGACATCTCCGACAGCGCCGGAGCGCAGATGATCCTGGACGCGATCCGCAAGCGCTGGCCGTGGGTCAAG
CATCTATTCGCGGACGGTGCCTATGACCGGCTCCAGTTGATGGACAAGGCTGCCTACCTGGACTTCGTCGTCGAGGTGATCCGTCGCAGGGACGGAGCGA
AAGGCTTTGAAGTTCTCCCCCGGCGCTGGGTCGTGGAGCGAACCTTCGGATGGATGACCCGATGGCGACGCCTCGTGCGCGATTACGAGCGTCGCATCGA
TGTCTCACAGGCCATGATCTTCGTCGCCATGGGCGCCAATCTCACCCGAAGAAACGCTCATCCATGACTTTCCAAACAGGCTC
ATCCGTCTGATATGACGGAGGAGGAATGGGCGCGCATCGCGCCACTGATGCCCGAGCCGGGACGCACGGGGCGTCCGCGCGAGATCGAATTCCGCGAGGT
GATCAACGCGGTTCGTTACCTGGTTCGATCCGGCTGCGACTGGCGAATGCTGCCGATCCATTTCGGGCATTGGCGTACGGTCTATGGTTGGTTCAGGGAA
TTGGCCCGGCGGTTCCTGTTCCAGACCATTCATGATGTGGAACTGATGCTTGACCGGGAGCGCTCGGGCCGTGAAGCCAGCCCTTCGGCCGGAGTGATCG
ACAGCCAGAGCATCAAGGCGCCGCACGCGAAAACAAGAGGTTACGACGCTGGAAAGAAGATTGTCGGGCGCAAGCGGCATATCGCCGTGGATACGGACGG
ACGCCTGCTGATGGTCAACCTGACGCCGGCGGACATCTCCGACAGCGCCGGAGCGCAGATGATCCTGGACGCGATCCGCAAGCGCTGGCCGTGGGTCAAG
CATCTATTCGCGGACGGTGCCTATGACCGGCTCCAGTTGATGGACAAGGCTGCCTACCTGGACTTCGTCGTCGAGGTGATCCGTCGCAGGGACGGAGCGA
AAGGCTTTGAAGTTCTCCCCCGGCGCTGGGTCGTGGAGCGAACCTTCGGATGGATGACCCGATGGCGACGCCTCGTGCGCGATTACGAGCGTCGCATCGA
TGTCTCACAGGCCATGATCTTCGTCGCCATGGGCGCCAATCTCACCCGAAGAAACGCTCATCCATGACTTTCCAAACAGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
825 bp | 274 aa | 43 | 867 | + | No |
Chemistry : DDE
ORF sequence :
MWTPEQRGRMARITRKTKRYPSDMTEEEWARIAPLMPEPGRTGRPREIEFREVINAVRYLVRSGCGWRMLPIHFGHWRTVYGWFRELARRFLFQTIHDVE
LMLDRERSGREASPSAGVIDSQSIKAPHAKTRGYDAGKKIVGRKRHIAVDTDGRLLMVNLTPADISDSAGAQMILDAIRKRWPWVKHLFADGAYDRLQLM
DKAAYLDFVVEVIRRRDGAKGFEVLPRRWVVERTFGWMTRWRRLVRDYERRIDVSQAMIFVAMGANLTRRNAHP
LMLDRERSGREASPSAGVIDSQSIKAPHAKTRGYDAGKKIVGRKRHIAVDTDGRLLMVNLTPADISDSAGAQMILDAIRKRWPWVKHLFADGAYDRLQLM
DKAAYLDFVVEVIRRRDGAKGFEVLPRRWVVERTFGWMTRWRRLVRDYERRIDVSQAMIFVAMGANLTRRNAHP
Blast result :
Comments
ISGdi2 is 88% aa similar to IS12528.
References
1] Miriam Land (2008) Direct submission