ISGdi1
- Family IS5
- Group IS1031
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Gluconacetobacter diazotrophicus | Gluconacetobacter diazotrophicus |
DNA section
IS Length : 930 bp
Ends
IR Length : 23/25
IRL : GAGCCCGATCCGAAAGTTTTTGAACAATACCAGCCTGTTGTGATTCATCC
IRR : GAGCCCGATCCGAAAGTTCTTCAACCGTGACAATGCCTTGCTGTCCGTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTCCAGCCTC | TTA | GAGCCCGATC | 3 |
DNA sequence
GAGCCCGATCCGAAAGTTTTTGAACAATACCAGCCTGTTGTGATTCATCCGTCTTTGCGAAGAGATGGAGTGAATGGTGACATGGACTGGTATTGCCCGA
CGTGAACATAGCCGGGAAGGGTTGCGATATCCATCGGATATGACGGACGGGGAGTGGGCTTTGATCATGCCATTTGTACCCCCGGCGAAACGGGGCGGTC
GCCCCCGCACTACGGATATGCGCGAGGTGGTCAACGCGATGCTCTACATAGCCTCGGCCGGGTGTGCGTGGCGCCTGCTGCCGAAATGCTTTCCGCCGGT
CTCGACCGTCAGGCGCTATTTTTACGCCTGGCGTGGTGCCGGAGTGTTCGAAGTCATGAATACGGTGCTGGTCATGAGCCTGCGCGAGATCGAGGGGCGT
GAAGCCTCTCCGAGCGCGGGCGTGATTGACAGCCAGTCGGTGAAAACCACGGAAAGTGGCGGGCTTTCGGGCTATGACGCGGGGAAGAAGGTCAAGGGCC
GCAAGCGCCATATTGTGACGGATACCTGCGGCTTCCTGATCTTTCTCCTCGTTCATGCCGCCGACATCCAGGACCGTGATGGGGCTGTTGATGTCCTGGC
AGCGATACGCAGGCGCTTTCCCTGGCTGCGCCACATCTTCGCTGATGGCGGCTATGCTGGCGACAAATTGCGATCCGCGCTCGCCTCCATGGGAAAATGG
ACCCTTGAAATCATCAGGCGGTCCGATACGGCGAAGGGCTTTCAGATCCTGCCGCGCCGCTGGGTGGTTGAACGGACATTCGCATGGCTGGGACGGTGCA
GGCGGCTCGCCAAAGACTGGGAACAATCCATTGCTTCCTCAACCGCATGGACATTGATCGCCTCGATCCGAATGCTCACACGACGGACAGCAAGGCATTG
TCACGGTTGAAGAACTTTCGGATCGGGCTC
CGTGAACATAGCCGGGAAGGGTTGCGATATCCATCGGATATGACGGACGGGGAGTGGGCTTTGATCATGCCATTTGTACCCCCGGCGAAACGGGGCGGTC
GCCCCCGCACTACGGATATGCGCGAGGTGGTCAACGCGATGCTCTACATAGCCTCGGCCGGGTGTGCGTGGCGCCTGCTGCCGAAATGCTTTCCGCCGGT
CTCGACCGTCAGGCGCTATTTTTACGCCTGGCGTGGTGCCGGAGTGTTCGAAGTCATGAATACGGTGCTGGTCATGAGCCTGCGCGAGATCGAGGGGCGT
GAAGCCTCTCCGAGCGCGGGCGTGATTGACAGCCAGTCGGTGAAAACCACGGAAAGTGGCGGGCTTTCGGGCTATGACGCGGGGAAGAAGGTCAAGGGCC
GCAAGCGCCATATTGTGACGGATACCTGCGGCTTCCTGATCTTTCTCCTCGTTCATGCCGCCGACATCCAGGACCGTGATGGGGCTGTTGATGTCCTGGC
AGCGATACGCAGGCGCTTTCCCTGGCTGCGCCACATCTTCGCTGATGGCGGCTATGCTGGCGACAAATTGCGATCCGCGCTCGCCTCCATGGGAAAATGG
ACCCTTGAAATCATCAGGCGGTCCGATACGGCGAAGGGCTTTCAGATCCTGCCGCGCCGCTGGGTGGTTGAACGGACATTCGCATGGCTGGGACGGTGCA
GGCGGCTCGCCAAAGACTGGGAACAATCCATTGCTTCCTCAACCGCATGGACATTGATCGCCTCGATCCGAATGCTCACACGACGGACAGCAAGGCATTG
TCACGGTTGAAGAACTTTCGGATCGGGCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
837 bp | 278 aa | 74 | 910 | + | No |
Chemistry : DDE
ORF sequence :
MVTWTGIARREHSREGLRYPSDMTDGEWALIMPFVPPAKRGGRPRTTDMREVVNAMLYIASAGCAWRLLPKCFPPVSTVRRYFYAWRGAGVFEVMNTVLV
MSLREIEGREASPSAGVIDSQSVKTTESGGLSGYDAGKKVKGRKRHIVTDTCGFLIFLLVHAADIQDRDGAVDVLAAIRRRFPWLRHIFADGGYAGDKLR
SALASMGKWTLEIIRRSDTAKGFQILPRRWVVERTFAWLGRCRRLAKDWEQSIASSTAWTLIASIRMLTRRTARHCHG
MSLREIEGREASPSAGVIDSQSVKTTESGGLSGYDAGKKVKGRKRHIVTDTCGFLIFLLVHAADIQDRDGAVDVLAAIRRRFPWLRHIFADGGYAGDKLR
SALASMGKWTLEIIRRSDTAKGFQILPRRWVVERTFAWLGRCRRLAKDWEQSIASSTAWTLIASIRMLTRRTARHCHG
Blast result :
Comments
ISGdi1 is 98% aa similar to IS1031A.
References
1] Miriam Land (2008) Direct submission