ISStau5
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAMD00000000 | ND | Stigmatella aurantiaca | Stigmatella aurantiaca DW4/3-1 |
DNA section
IS Length : 1580 bp
Ends
IR Length : 18/22
IRL : GTAACCGTTCACCGGAATAGGCCTGTCTGAAGGGAGAGCAGGAGCAGACA
IRR : GTAACCGTTCACCGTTTCAGGCAGCGTTCGCGAGCTGAGGCGTGTCCGTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGAGCCACTA | AACCGGGG | CAGGCTCACC | 8 |
DNA sequence
GTAACCGTTCACCGGAATAGGCCTGTCTGAAGGGAGAGCAGGAGCAGACAACGGGGCGAGGAACCCATCGACAGGGTAGGAGGAAGAGTGTACTACCTGT
GAGGTGAGCCCAACAGATGCCAAGGATGCCCGAATCGCTGAGTTGGAAGCGCAACTGGCCGAGAGGGACGAACGCATTACGCAGCTGATGGCGCTGGTAG
GTGCGCTCACCCAACGGGTGGCGGAGCTGGAGCAGCGGCTGGCCCAAAACTCCAGCAACTCCTCGCGCCCGCCCTCGTCCGATGCACCTGGCAGCGCGCG
CCCAGGCAAGAAGCCCACGGGGAAGCGGCCGGGAGGACAGCCCGGACACAAGAAGCATGAGCGAAGGCTGGTGCCGCCCGAGGCCGTGCAGCACTTTGTG
GAACTGGTGCCCACGCAGTGCCAGAAGTGTCGGCGAAGGCTGGTGGGACGGGACACCGAGCCGCGGCGCCATCAGGTGGTGGAAGTGCCGCCTCTGTCTG
CCATCATCACCGAGTACCGCAGCCACGCGCTGGAGTGCAGCGAGTGCGGCACGGTGACGCGACAGCCGGTGCCCGCGCACGCACGCAGCGCCTTCGGGGA
CAGGCTGGGTGCCCTGGCCAGCCTCCTGGTGGGCAAGTACCGGCTGTCCAAGCGGCTGGTGAAGGACGCGCTCTCGGACATGCTGGGTGTCGAGTTGTGT
GTGGGCAGTGTGGTCAACCTCGAAGAGGAGATGGCCGAGGCGCTGGTGCCAGCGGTGGCCCAAGCCGCCCAGTCTGTGCAGTCAGCCACCCCCGTGCATG
CAGATGAAACCGGGTGGGTGGAGGGACGCGAGGACGGCCGGGGCAAGCGCGCCTGGCTGTGGATAGTAGCTACCGCACGGGTGGCCCTCTTCCATATCGC
CCCGAGTCGAGGCGGCAAGGTGGCGCGAGCCCTGTTGGGAGAGGACTTCACAGGCTTCCTCGTCACTGACAGGTGGAGTGGCTATCAGTGGTACGACGCG
GGCCTCCGGCAAATCTGCTGGGCCCACCTCACCCGAGACTTCCAGGGCTTCATCGACCGTGGCGGTAAGGGGGGCCGCTTAGGCAAGAAGCTGATGCGTC
AGAGAAATCTCTTCTTCACCTGGTATCACCGCGTGCGAGATGGAACCCTGACGCGTCAGGACTTCGAGAAGAGGATGCGCGAAGTGGAGCGCGAGGTGGG
GCGGCTGCTGCGCCGAGCCGTAATGCGCGCGGAGAAGAAGACGGCCGGGATGGCTCGGGAGATTCTCCAATGGGAGAAGTGCCTGTGAACGTTTGTGGAC
GTACCGGGCCTGGAGCCGACGAACAATTTCGGCGAGAGGTGCCTGCGTCACGCGGTCATGTACAGGAAAACCTCCTTCGGGACGCAAGGCCCCCAGGGCA
GTCGCTTCGTGGAACGGATCCTCACGACAGTCACTACCCTCAAGCTCCAACGGCGCGGTGTGCTGTCCTTTCTGACCGACACGTTACACGCTCACCGACG
AAGCCTTCCGATGCCCTCGCTGCTGCCCGTGACGGACACGCCTCAGCTCGCGAACGCTGCCTGAAACGGTGAACGGTTAC
GAGGTGAGCCCAACAGATGCCAAGGATGCCCGAATCGCTGAGTTGGAAGCGCAACTGGCCGAGAGGGACGAACGCATTACGCAGCTGATGGCGCTGGTAG
GTGCGCTCACCCAACGGGTGGCGGAGCTGGAGCAGCGGCTGGCCCAAAACTCCAGCAACTCCTCGCGCCCGCCCTCGTCCGATGCACCTGGCAGCGCGCG
CCCAGGCAAGAAGCCCACGGGGAAGCGGCCGGGAGGACAGCCCGGACACAAGAAGCATGAGCGAAGGCTGGTGCCGCCCGAGGCCGTGCAGCACTTTGTG
GAACTGGTGCCCACGCAGTGCCAGAAGTGTCGGCGAAGGCTGGTGGGACGGGACACCGAGCCGCGGCGCCATCAGGTGGTGGAAGTGCCGCCTCTGTCTG
CCATCATCACCGAGTACCGCAGCCACGCGCTGGAGTGCAGCGAGTGCGGCACGGTGACGCGACAGCCGGTGCCCGCGCACGCACGCAGCGCCTTCGGGGA
CAGGCTGGGTGCCCTGGCCAGCCTCCTGGTGGGCAAGTACCGGCTGTCCAAGCGGCTGGTGAAGGACGCGCTCTCGGACATGCTGGGTGTCGAGTTGTGT
GTGGGCAGTGTGGTCAACCTCGAAGAGGAGATGGCCGAGGCGCTGGTGCCAGCGGTGGCCCAAGCCGCCCAGTCTGTGCAGTCAGCCACCCCCGTGCATG
CAGATGAAACCGGGTGGGTGGAGGGACGCGAGGACGGCCGGGGCAAGCGCGCCTGGCTGTGGATAGTAGCTACCGCACGGGTGGCCCTCTTCCATATCGC
CCCGAGTCGAGGCGGCAAGGTGGCGCGAGCCCTGTTGGGAGAGGACTTCACAGGCTTCCTCGTCACTGACAGGTGGAGTGGCTATCAGTGGTACGACGCG
GGCCTCCGGCAAATCTGCTGGGCCCACCTCACCCGAGACTTCCAGGGCTTCATCGACCGTGGCGGTAAGGGGGGCCGCTTAGGCAAGAAGCTGATGCGTC
AGAGAAATCTCTTCTTCACCTGGTATCACCGCGTGCGAGATGGAACCCTGACGCGTCAGGACTTCGAGAAGAGGATGCGCGAAGTGGAGCGCGAGGTGGG
GCGGCTGCTGCGCCGAGCCGTAATGCGCGCGGAGAAGAAGACGGCCGGGATGGCTCGGGAGATTCTCCAATGGGAGAAGTGCCTGTGAACGTTTGTGGAC
GTACCGGGCCTGGAGCCGACGAACAATTTCGGCGAGAGGTGCCTGCGTCACGCGGTCATGTACAGGAAAACCTCCTTCGGGACGCAAGGCCCCCAGGGCA
GTCGCTTCGTGGAACGGATCCTCACGACAGTCACTACCCTCAAGCTCCAACGGCGCGGTGTGCTGTCCTTTCTGACCGACACGTTACACGCTCACCGACG
AAGCCTTCCGATGCCCTCGCTGCTGCCCGTGACGGACACGCCTCAGCTCGCGAACGCTGCCTGAAACGGTGAACGGTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1185 bp | 394 aa | 104 | 1288 | + | No |
Chemistry : DDE
ORF sequence :
VSPTDAKDARIAELEAQLAERDERITQLMALVGALTQRVAELEQRLAQNSSNSSRPPSSDAPGSARPGKKPTGKRPGGQPGHKKHERRLVPPEAVQHFVE
LVPTQCQKCRRRLVGRDTEPRRHQVVEVPPLSAIITEYRSHALECSECGTVTRQPVPAHARSAFGDRLGALASLLVGKYRLSKRLVKDALSDMLGVELCV
GSVVNLEEEMAEALVPAVAQAAQSVQSATPVHADETGWVEGREDGRGKRAWLWIVATARVALFHIAPSRGGKVARALLGEDFTGFLVTDRWSGYQWYDAG
LRQICWAHLTRDFQGFIDRGGKGGRLGKKLMRQRNLFFTWYHRVRDGTLTRQDFEKRMREVEREVGRLLRRAVMRAEKKTAGMAREILQWEKCL
LVPTQCQKCRRRLVGRDTEPRRHQVVEVPPLSAIITEYRSHALECSECGTVTRQPVPAHARSAFGDRLGALASLLVGKYRLSKRLVKDALSDMLGVELCV
GSVVNLEEEMAEALVPAVAQAAQSVQSATPVHADETGWVEGREDGRGKRAWLWIVATARVALFHIAPSRGGKVARALLGEDFTGFLVTDRWSGYQWYDAG
LRQICWAHLTRDFQGFIDRGGKGGRLGKKLMRQRNLFFTWYHRVRDGTLTRQDFEKRMREVEREVGRLLRRAVMRAEKKTAGMAREILQWEKCL
Blast result :
Comments
ISStau5 is 93% aa similar to ISStau3.
References
1] ISfinder annotation (2008).
2] Nierman,W.C. (2006) Direct Submission GenBank.
2] Nierman,W.C. (2006) Direct Submission GenBank.