ISStau5

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAMD00000000 ND Stigmatella aurantiaca
Stigmatella aurantiaca DW4/3-1
DNA section
IS Length : 1580 bp

Ends


IR Length : 18/22

IRL : GTAACCGTTCACCGGAATAGGCCTGTCTGAAGGGAGAGCAGGAGCAGACA
IRR : GTAACCGTTCACCGTTTCAGGCAGCGTTCGCGAGCTGAGGCGTGTCCGTC

Insertion site


Left flankDirect repeatRight flankDR Length
AGAGCCACTAAACCGGGGCAGGCTCACC8

DNA sequence

GTAACCGTTCACCGGAATAGGCCTGTCTGAAGGGAGAGCAGGAGCAGACAACGGGGCGAGGAACCCATCGACAGGGTAGGAGGAAGAGTGTACTACCTGT
GAGGTGAGCCCAACAGATGCCAAGGATGCCCGAATCGCTGAGTTGGAAGCGCAACTGGCCGAGAGGGACGAACGCATTACGCAGCTGATGGCGCTGGTAG
GTGCGCTCACCCAACGGGTGGCGGAGCTGGAGCAGCGGCTGGCCCAAAACTCCAGCAACTCCTCGCGCCCGCCCTCGTCCGATGCACCTGGCAGCGCGCG
CCCAGGCAAGAAGCCCACGGGGAAGCGGCCGGGAGGACAGCCCGGACACAAGAAGCATGAGCGAAGGCTGGTGCCGCCCGAGGCCGTGCAGCACTTTGTG
GAACTGGTGCCCACGCAGTGCCAGAAGTGTCGGCGAAGGCTGGTGGGACGGGACACCGAGCCGCGGCGCCATCAGGTGGTGGAAGTGCCGCCTCTGTCTG
CCATCATCACCGAGTACCGCAGCCACGCGCTGGAGTGCAGCGAGTGCGGCACGGTGACGCGACAGCCGGTGCCCGCGCACGCACGCAGCGCCTTCGGGGA
CAGGCTGGGTGCCCTGGCCAGCCTCCTGGTGGGCAAGTACCGGCTGTCCAAGCGGCTGGTGAAGGACGCGCTCTCGGACATGCTGGGTGTCGAGTTGTGT
GTGGGCAGTGTGGTCAACCTCGAAGAGGAGATGGCCGAGGCGCTGGTGCCAGCGGTGGCCCAAGCCGCCCAGTCTGTGCAGTCAGCCACCCCCGTGCATG
CAGATGAAACCGGGTGGGTGGAGGGACGCGAGGACGGCCGGGGCAAGCGCGCCTGGCTGTGGATAGTAGCTACCGCACGGGTGGCCCTCTTCCATATCGC
CCCGAGTCGAGGCGGCAAGGTGGCGCGAGCCCTGTTGGGAGAGGACTTCACAGGCTTCCTCGTCACTGACAGGTGGAGTGGCTATCAGTGGTACGACGCG
GGCCTCCGGCAAATCTGCTGGGCCCACCTCACCCGAGACTTCCAGGGCTTCATCGACCGTGGCGGTAAGGGGGGCCGCTTAGGCAAGAAGCTGATGCGTC
AGAGAAATCTCTTCTTCACCTGGTATCACCGCGTGCGAGATGGAACCCTGACGCGTCAGGACTTCGAGAAGAGGATGCGCGAAGTGGAGCGCGAGGTGGG
GCGGCTGCTGCGCCGAGCCGTAATGCGCGCGGAGAAGAAGACGGCCGGGATGGCTCGGGAGATTCTCCAATGGGAGAAGTGCCTGTGAACGTTTGTGGAC
GTACCGGGCCTGGAGCCGACGAACAATTTCGGCGAGAGGTGCCTGCGTCACGCGGTCATGTACAGGAAAACCTCCTTCGGGACGCAAGGCCCCCAGGGCA
GTCGCTTCGTGGAACGGATCCTCACGACAGTCACTACCCTCAAGCTCCAACGGCGCGGTGTGCTGTCCTTTCTGACCGACACGTTACACGCTCACCGACG
AAGCCTTCCGATGCCCTCGCTGCTGCCCGTGACGGACACGCCTCAGCTCGCGAACGCTGCCTGAAACGGTGAACGGTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1185 bp394 aa1041288+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VSPTDAKDARIAELEAQLAERDERITQLMALVGALTQRVAELEQRLAQNSSNSSRPPSSDAPGSARPGKKPTGKRPGGQPGHKKHERRLVPPEAVQHFVE
LVPTQCQKCRRRLVGRDTEPRRHQVVEVPPLSAIITEYRSHALECSECGTVTRQPVPAHARSAFGDRLGALASLLVGKYRLSKRLVKDALSDMLGVELCV
GSVVNLEEEMAEALVPAVAQAAQSVQSATPVHADETGWVEGREDGRGKRAWLWIVATARVALFHIAPSRGGKVARALLGEDFTGFLVTDRWSGYQWYDAG
LRQICWAHLTRDFQGFIDRGGKGGRLGKKLMRQRNLFFTWYHRVRDGTLTRQDFEKRMREVEREVGRLLRRAVMRAEKKTAGMAREILQWEKCL

 

Blast result :
Comments
ISStau5 is 93% aa similar to ISStau3.
References
1] ISfinder annotation (2008).

2] Nierman,W.C. (2006) Direct Submission GenBank.