ISSde14
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007954 | ND | Shewanella denitrificans | Shewanella denitrificans OS217 |
DNA section
IS Length : 1351 bp
Ends
IR Length : 10
IRL : ggatgatgggATGGACACCTCTTGTTAAATCGGCGTCATTTGCGCCATAT
IRR : -------tatATGGACACCTCACTTAATTCAAGCGATATTATTGAGCAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGAGCTACAG | GGTATTTACG | 0 | |
CGAGCTACAG | GGTATTTACG | 0 |
DNA sequence
GGATGATGGGATGGACACCTCTTGTTAAATCGGCGTCATTTGCGCCATATTGAATTTGTGCGTTCAATAACTAACAAAAGGTGTCCAATATGAAAGTTAC
ACTAATAGGAATTGATTTAGCAAAAAATGTCTTCCAAGTTTGTGGTATTAACCAAGCAGGGAAGTCGGTTTTCAACCGAGCTCTAAAGCGCTCACAATTG
ATGGCTTTTCTGTTTAAATACCCCGATAGCATCATTGCTATGGAAGCTTGTAGTGGCTCGAACTATTGGGGGCGAGAGCTGTTAACTAAAGGCTTCGAAG
TTCGCCTCATACCACCACAGCATGTGAAACCTTTTGTTAAAGGCAATAAGAATGATCGAAATGATGCATTTGCCATATGTGAGGCAGCATTAAGACCTAA
TCTCACTTTTGTGCAGCCCAGAACGCTTGAGCAAACTGATATGATCCTAGCTCATCGGATCCGTGAGCGGAATGTAGAGAATCGTACATCTTTAATAAAC
CAAATAAGAGGATTATTAAATGAATACGGCGTAGTTATCGCCCAAGGTAAAGAGCGGCTAAAACTGGCGATACCAGAGCTCTTAGAAAATGCTGACAGCG
GTTTAACTGAAATCGCCAGACAACATTTTCAAGCTCTTTTAGAAGAGTGGAAGCAAGTGGATAGAACCATTAAAAACTTAGAAAAAAATATCAAAAGCCA
AGCTAAATTGAATCATCAGACCAATCGGTTAATGGGCATAAAAGGTGTTGCAGAAATTACAGCAACAGCTGCGGTCGCCTTTGCTGGCAACGGTGCGCAA
TATCATAATGGTCGTCACTTTGCTGCTAATTTGGGACTTGTTCCAAGAGAGTACTCAAGTGGCGGTAAGCAAAAACTAGGCAAAATAACTAAGCGTGGAA
ATAACTACCTAAGGCGGCTTCTTGTCCAGGGAGCTTGGTCAATCATACGTTATGTCGGAAATAGCACTGACCGTATGTCAGTGTGGGCGAAAAAGTTGAT
TGAGCGTCGAGGTAAGCACAAGGCCGCTGTTGCCGTAGCCAATAAACTAGCACGAATAATTTGGTCAATGTTGTACAACCAAACAGAATACAGAGCTAAT
TAGAAAGAGTTTAGTAATAACACATCCAACGATGCGATGAAGTGTAATGAAGTAACAGGTAAAACCGGCCTTTGCCAATGCTGAGAAAGTACACGGGAGC
GTATAAACCCGTAGGGACGATAAGCTACAAAGGCGCGGTACTCATTAGGGCCAGAGAATAATACTTTCTCATAAACAGGCCGGATATACGTATGCAGTTT
TACCCACTGTTGCTCAATAATATCGCTTGAATTAAGTGAGGTGTCCATATA
ACTAATAGGAATTGATTTAGCAAAAAATGTCTTCCAAGTTTGTGGTATTAACCAAGCAGGGAAGTCGGTTTTCAACCGAGCTCTAAAGCGCTCACAATTG
ATGGCTTTTCTGTTTAAATACCCCGATAGCATCATTGCTATGGAAGCTTGTAGTGGCTCGAACTATTGGGGGCGAGAGCTGTTAACTAAAGGCTTCGAAG
TTCGCCTCATACCACCACAGCATGTGAAACCTTTTGTTAAAGGCAATAAGAATGATCGAAATGATGCATTTGCCATATGTGAGGCAGCATTAAGACCTAA
TCTCACTTTTGTGCAGCCCAGAACGCTTGAGCAAACTGATATGATCCTAGCTCATCGGATCCGTGAGCGGAATGTAGAGAATCGTACATCTTTAATAAAC
CAAATAAGAGGATTATTAAATGAATACGGCGTAGTTATCGCCCAAGGTAAAGAGCGGCTAAAACTGGCGATACCAGAGCTCTTAGAAAATGCTGACAGCG
GTTTAACTGAAATCGCCAGACAACATTTTCAAGCTCTTTTAGAAGAGTGGAAGCAAGTGGATAGAACCATTAAAAACTTAGAAAAAAATATCAAAAGCCA
AGCTAAATTGAATCATCAGACCAATCGGTTAATGGGCATAAAAGGTGTTGCAGAAATTACAGCAACAGCTGCGGTCGCCTTTGCTGGCAACGGTGCGCAA
TATCATAATGGTCGTCACTTTGCTGCTAATTTGGGACTTGTTCCAAGAGAGTACTCAAGTGGCGGTAAGCAAAAACTAGGCAAAATAACTAAGCGTGGAA
ATAACTACCTAAGGCGGCTTCTTGTCCAGGGAGCTTGGTCAATCATACGTTATGTCGGAAATAGCACTGACCGTATGTCAGTGTGGGCGAAAAAGTTGAT
TGAGCGTCGAGGTAAGCACAAGGCCGCTGTTGCCGTAGCCAATAAACTAGCACGAATAATTTGGTCAATGTTGTACAACCAAACAGAATACAGAGCTAAT
TAGAAAGAGTTTAGTAATAACACATCCAACGATGCGATGAAGTGTAATGAAGTAACAGGTAAAACCGGCCTTTGCCAATGCTGAGAAAGTACACGGGAGC
GTATAAACCCGTAGGGACGATAAGCTACAAAGGCGCGGTACTCATTAGGGCCAGAGAATAATACTTTCTCATAAACAGGCCGGATATACGTATGCAGTTT
TACCCACTGTTGCTCAATAATATCGCTTGAATTAAGTGAGGTGTCCATATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1014 bp | 337 aa | 90 | 1103 | + | No |
Chemistry : DEDD
ORF sequence :
MKVTLIGIDLAKNVFQVCGINQAGKSVFNRALKRSQLMAFLFKYPDSIIAMEACSGSNYWGRELLTKGFEVRLIPPQHVKPFVKGNKNDRNDAFAICEAA
LRPNLTFVQPRTLEQTDMILAHRIRERNVENRTSLINQIRGLLNEYGVVIAQGKERLKLAIPELLENADSGLTEIARQHFQALLEEWKQVDRTIKNLEKN
IKSQAKLNHQTNRLMGIKGVAEITATAAVAFAGNGAQYHNGRHFAANLGLVPREYSSGGKQKLGKITKRGNNYLRRLLVQGAWSIIRYVGNSTDRMSVWA
KKLIERRGKHKAAVAVANKLARIIWSMLYNQTEYRAN
LRPNLTFVQPRTLEQTDMILAHRIRERNVENRTSLINQIRGLLNEYGVVIAQGKERLKLAIPELLENADSGLTEIARQHFQALLEEWKQVDRTIKNLEKN
IKSQAKLNHQTNRLMGIKGVAEITATAAVAFAGNGAQYHNGRHFAANLGLVPREYSSGGKQKLGKITKRGNNYLRRLLVQGAWSIIRYVGNSTDRMSVWA
KKLIERRGKHKAAVAVANKLARIIWSMLYNQTEYRAN
Blast result :
Comments
There are 2 copies of ISSde14 encoded in the Shewanella denitrificans genome. The ISSde14 transposase has 69% identity with that of ISShes7.
References
1] Romine, M. F. (2008) Direct submission.