ISSde14

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007954 ND Shewanella denitrificans
Shewanella denitrificans OS217
DNA section
IS Length : 1351 bp

Ends


IR Length : 10

IRL : ggatgatgggATGGACACCTCTTGTTAAATCGGCGTCATTTGCGCCATAT
IRR : -------tatATGGACACCTCACTTAATTCAAGCGATATTATTGAGCAAC

Insertion site


Left flankDirect repeatRight flankDR Length
CGAGCTACAGGGTATTTACG0
CGAGCTACAGGGTATTTACG0

DNA sequence

GGATGATGGGATGGACACCTCTTGTTAAATCGGCGTCATTTGCGCCATATTGAATTTGTGCGTTCAATAACTAACAAAAGGTGTCCAATATGAAAGTTAC
ACTAATAGGAATTGATTTAGCAAAAAATGTCTTCCAAGTTTGTGGTATTAACCAAGCAGGGAAGTCGGTTTTCAACCGAGCTCTAAAGCGCTCACAATTG
ATGGCTTTTCTGTTTAAATACCCCGATAGCATCATTGCTATGGAAGCTTGTAGTGGCTCGAACTATTGGGGGCGAGAGCTGTTAACTAAAGGCTTCGAAG
TTCGCCTCATACCACCACAGCATGTGAAACCTTTTGTTAAAGGCAATAAGAATGATCGAAATGATGCATTTGCCATATGTGAGGCAGCATTAAGACCTAA
TCTCACTTTTGTGCAGCCCAGAACGCTTGAGCAAACTGATATGATCCTAGCTCATCGGATCCGTGAGCGGAATGTAGAGAATCGTACATCTTTAATAAAC
CAAATAAGAGGATTATTAAATGAATACGGCGTAGTTATCGCCCAAGGTAAAGAGCGGCTAAAACTGGCGATACCAGAGCTCTTAGAAAATGCTGACAGCG
GTTTAACTGAAATCGCCAGACAACATTTTCAAGCTCTTTTAGAAGAGTGGAAGCAAGTGGATAGAACCATTAAAAACTTAGAAAAAAATATCAAAAGCCA
AGCTAAATTGAATCATCAGACCAATCGGTTAATGGGCATAAAAGGTGTTGCAGAAATTACAGCAACAGCTGCGGTCGCCTTTGCTGGCAACGGTGCGCAA
TATCATAATGGTCGTCACTTTGCTGCTAATTTGGGACTTGTTCCAAGAGAGTACTCAAGTGGCGGTAAGCAAAAACTAGGCAAAATAACTAAGCGTGGAA
ATAACTACCTAAGGCGGCTTCTTGTCCAGGGAGCTTGGTCAATCATACGTTATGTCGGAAATAGCACTGACCGTATGTCAGTGTGGGCGAAAAAGTTGAT
TGAGCGTCGAGGTAAGCACAAGGCCGCTGTTGCCGTAGCCAATAAACTAGCACGAATAATTTGGTCAATGTTGTACAACCAAACAGAATACAGAGCTAAT
TAGAAAGAGTTTAGTAATAACACATCCAACGATGCGATGAAGTGTAATGAAGTAACAGGTAAAACCGGCCTTTGCCAATGCTGAGAAAGTACACGGGAGC
GTATAAACCCGTAGGGACGATAAGCTACAAAGGCGCGGTACTCATTAGGGCCAGAGAATAATACTTTCTCATAAACAGGCCGGATATACGTATGCAGTTT
TACCCACTGTTGCTCAATAATATCGCTTGAATTAAGTGAGGTGTCCATATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1014 bp337 aa901103+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKVTLIGIDLAKNVFQVCGINQAGKSVFNRALKRSQLMAFLFKYPDSIIAMEACSGSNYWGRELLTKGFEVRLIPPQHVKPFVKGNKNDRNDAFAICEAA
LRPNLTFVQPRTLEQTDMILAHRIRERNVENRTSLINQIRGLLNEYGVVIAQGKERLKLAIPELLENADSGLTEIARQHFQALLEEWKQVDRTIKNLEKN
IKSQAKLNHQTNRLMGIKGVAEITATAAVAFAGNGAQYHNGRHFAANLGLVPREYSSGGKQKLGKITKRGNNYLRRLLVQGAWSIIRYVGNSTDRMSVWA
KKLIERRGKHKAAVAVANKLARIIWSMLYNQTEYRAN

 

Blast result :
Comments
There are 2 copies of ISSde14 encoded in the Shewanella denitrificans genome. The ISSde14 transposase has 69% identity with that of ISShes7.
References
1] Romine, M. F. (2008) Direct submission.