ISSde13

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_007954 ND Shewanella denitrificans
Shewanella denitrificans OS217
DNA section
IS Length : 1196 bp

Ends


Left end : ATGGATAATAACTAAGTAATTTGGGTAAAGTGAGTCCCAAGCTTTTGTCGCAACTTAAGCCTTCTATATGATAGCTCGATATCCTTATGGCTCCTCTATT
Right end : GTCGTCATCCTCAATTCGATGCTAAGAGATGGCGTCATGTGGGATGAGAATACAGGTGAAAATAAGTTGTTGACGCCATAGTCGTTTGTTATATTGCGAC

Insertion site


Left flankDirect repeatRight flankDR Length
GCCTATCCTTATTGTGTTGTACGTA5

DNA sequence

ATGGATAATAACTAAGTAATTTGGGTAAAGTGAGTCCCAAGCTTTTGTCGCAACTTAAGCCTTCTATATGATAGCTCGATATCCTTATGGCTCCTCTATT
GAGAGACCGATAACAAACGTGAGCATCATGTAGAACTCCAAGCATTATACTCGAATAGTCGAATGGGTCTAGAACCCGTATTTCGCAATAAAGAGAACGC
TTATTATGAAGAGCCATCACATGCAAAACATCAATGTCGGAGTTGATATTGGTAAATCACAACTTGATATCTTTATCCGCCCCCTTGATATCTTTTTCAC
TGTTGCTAATGACGAAAAAGGGATTAGAGATGCCATCAATAAGATAAAAATTCACAAGCCTCAGTGCATTGTAGTAGAAGCCACTGGTCGACTGGAAATG
CCATTCATTCTAGCTTGTTCAGAAGCAAAGCTTCCCTTTGTTATCGCTAACCCTATGCACGTGAAACGATTTGCTGGCGCGATTGGTCGACGAGCCAAAA
ATGACCGATTAGACGCTGAACTTATCGCCCACTATGCCGAAGCCATCAAGCCTAAACTGACTGAGTTAAAACCTGAAAAAATAAGATTAATGAGTGATTT
AGTTACTCGAAGGAATCAACTTCTCACCATGCAGACCATGGAAAAAAATCGCCATCAAATCTTATCTAAAACACTCCTTTCTACCATTAAACCCATTCTT
ACAGCGCTAAAGAACCAGATAACAAAAATCGAGTTGAAAATACAAAAGTTAATTGAAGAATGTACCGAGTATCAAAGCAAAAACATCATATTGCAGAGCA
TGCCAGGGATAGGAAAAATAGCAGCCGCATCAATTATCAGTAATGTGCCAGAGCTAGGCTATATCACCAATAAACAAGCAGCTTCCCTCATCGGGGTTGC
CCCCATGACCAAAGAAAGTGGCGACTACAAAGGCAAGCGGGTCATCCAAGGCGGACGAGCACAAGTACGCACTGTACTCTATATGGCAATGATGTCGGCT
ATGCAGTGTAACCCAGTGTTTAAAGCCATATATCAGCGACTACTTGGACTAGGAAAGCCCAAGAAAGTGGCTATTATTGCATGCGTGCGAAAGATGGTCG
TCATCCTCAATTCGATGCTAAGAGATGGCGTCATGTGGGATGAGAATACAGGTGAAAATAAGTTGTTGACGCCATAGTCGTTTGTTATATTGCGAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
972 bp323 aa2061177+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKSHHMQNINVGVDIGKSQLDIFIRPLDIFFTVANDEKGIRDAINKIKIHKPQCIVVEATGRLEMPFILACSEAKLPFVIANPMHVKRFAGAIGRRAKND
RLDAELIAHYAEAIKPKLTELKPEKIRLMSDLVTRRNQLLTMQTMEKNRHQILSKTLLSTIKPILTALKNQITKIELKIQKLIEECTEYQSKNIILQSMP
GIGKIAAASIISNVPELGYITNKQAASLIGVAPMTKESGDYKGKRVIQGGRAQVRTVLYMAMMSAMQCNPVFKAIYQRLLGLGKPKKVAIIACVRKMVVI
LNSMLRDGVMWDENTGENKLLTP

 

Blast result :
Comments
There is one copy of ISSde13 encoded in the Shewanella denitrificans genome. The ISSde13 transposase has 75% identity to that IS492
References
1] Romine, M. F. (2008) Direct submission.