ISSde13
- Family IS110
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007954 | ND | Shewanella denitrificans | Shewanella denitrificans OS217 |
DNA section
IS Length : 1196 bp
Ends
Left end : ATGGATAATAACTAAGTAATTTGGGTAAAGTGAGTCCCAAGCTTTTGTCGCAACTTAAGCCTTCTATATGATAGCTCGATATCCTTATGGCTCCTCTATT
Right end : GTCGTCATCCTCAATTCGATGCTAAGAGATGGCGTCATGTGGGATGAGAATACAGGTGAAAATAAGTTGTTGACGCCATAGTCGTTTGTTATATTGCGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCTATCCTT | ATTGT | GTTGTACGTA | 5 |
DNA sequence
ATGGATAATAACTAAGTAATTTGGGTAAAGTGAGTCCCAAGCTTTTGTCGCAACTTAAGCCTTCTATATGATAGCTCGATATCCTTATGGCTCCTCTATT
GAGAGACCGATAACAAACGTGAGCATCATGTAGAACTCCAAGCATTATACTCGAATAGTCGAATGGGTCTAGAACCCGTATTTCGCAATAAAGAGAACGC
TTATTATGAAGAGCCATCACATGCAAAACATCAATGTCGGAGTTGATATTGGTAAATCACAACTTGATATCTTTATCCGCCCCCTTGATATCTTTTTCAC
TGTTGCTAATGACGAAAAAGGGATTAGAGATGCCATCAATAAGATAAAAATTCACAAGCCTCAGTGCATTGTAGTAGAAGCCACTGGTCGACTGGAAATG
CCATTCATTCTAGCTTGTTCAGAAGCAAAGCTTCCCTTTGTTATCGCTAACCCTATGCACGTGAAACGATTTGCTGGCGCGATTGGTCGACGAGCCAAAA
ATGACCGATTAGACGCTGAACTTATCGCCCACTATGCCGAAGCCATCAAGCCTAAACTGACTGAGTTAAAACCTGAAAAAATAAGATTAATGAGTGATTT
AGTTACTCGAAGGAATCAACTTCTCACCATGCAGACCATGGAAAAAAATCGCCATCAAATCTTATCTAAAACACTCCTTTCTACCATTAAACCCATTCTT
ACAGCGCTAAAGAACCAGATAACAAAAATCGAGTTGAAAATACAAAAGTTAATTGAAGAATGTACCGAGTATCAAAGCAAAAACATCATATTGCAGAGCA
TGCCAGGGATAGGAAAAATAGCAGCCGCATCAATTATCAGTAATGTGCCAGAGCTAGGCTATATCACCAATAAACAAGCAGCTTCCCTCATCGGGGTTGC
CCCCATGACCAAAGAAAGTGGCGACTACAAAGGCAAGCGGGTCATCCAAGGCGGACGAGCACAAGTACGCACTGTACTCTATATGGCAATGATGTCGGCT
ATGCAGTGTAACCCAGTGTTTAAAGCCATATATCAGCGACTACTTGGACTAGGAAAGCCCAAGAAAGTGGCTATTATTGCATGCGTGCGAAAGATGGTCG
TCATCCTCAATTCGATGCTAAGAGATGGCGTCATGTGGGATGAGAATACAGGTGAAAATAAGTTGTTGACGCCATAGTCGTTTGTTATATTGCGAC
GAGAGACCGATAACAAACGTGAGCATCATGTAGAACTCCAAGCATTATACTCGAATAGTCGAATGGGTCTAGAACCCGTATTTCGCAATAAAGAGAACGC
TTATTATGAAGAGCCATCACATGCAAAACATCAATGTCGGAGTTGATATTGGTAAATCACAACTTGATATCTTTATCCGCCCCCTTGATATCTTTTTCAC
TGTTGCTAATGACGAAAAAGGGATTAGAGATGCCATCAATAAGATAAAAATTCACAAGCCTCAGTGCATTGTAGTAGAAGCCACTGGTCGACTGGAAATG
CCATTCATTCTAGCTTGTTCAGAAGCAAAGCTTCCCTTTGTTATCGCTAACCCTATGCACGTGAAACGATTTGCTGGCGCGATTGGTCGACGAGCCAAAA
ATGACCGATTAGACGCTGAACTTATCGCCCACTATGCCGAAGCCATCAAGCCTAAACTGACTGAGTTAAAACCTGAAAAAATAAGATTAATGAGTGATTT
AGTTACTCGAAGGAATCAACTTCTCACCATGCAGACCATGGAAAAAAATCGCCATCAAATCTTATCTAAAACACTCCTTTCTACCATTAAACCCATTCTT
ACAGCGCTAAAGAACCAGATAACAAAAATCGAGTTGAAAATACAAAAGTTAATTGAAGAATGTACCGAGTATCAAAGCAAAAACATCATATTGCAGAGCA
TGCCAGGGATAGGAAAAATAGCAGCCGCATCAATTATCAGTAATGTGCCAGAGCTAGGCTATATCACCAATAAACAAGCAGCTTCCCTCATCGGGGTTGC
CCCCATGACCAAAGAAAGTGGCGACTACAAAGGCAAGCGGGTCATCCAAGGCGGACGAGCACAAGTACGCACTGTACTCTATATGGCAATGATGTCGGCT
ATGCAGTGTAACCCAGTGTTTAAAGCCATATATCAGCGACTACTTGGACTAGGAAAGCCCAAGAAAGTGGCTATTATTGCATGCGTGCGAAAGATGGTCG
TCATCCTCAATTCGATGCTAAGAGATGGCGTCATGTGGGATGAGAATACAGGTGAAAATAAGTTGTTGACGCCATAGTCGTTTGTTATATTGCGAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
972 bp | 323 aa | 206 | 1177 | + | No |
Chemistry : DEDD
ORF sequence :
MKSHHMQNINVGVDIGKSQLDIFIRPLDIFFTVANDEKGIRDAINKIKIHKPQCIVVEATGRLEMPFILACSEAKLPFVIANPMHVKRFAGAIGRRAKND
RLDAELIAHYAEAIKPKLTELKPEKIRLMSDLVTRRNQLLTMQTMEKNRHQILSKTLLSTIKPILTALKNQITKIELKIQKLIEECTEYQSKNIILQSMP
GIGKIAAASIISNVPELGYITNKQAASLIGVAPMTKESGDYKGKRVIQGGRAQVRTVLYMAMMSAMQCNPVFKAIYQRLLGLGKPKKVAIIACVRKMVVI
LNSMLRDGVMWDENTGENKLLTP
RLDAELIAHYAEAIKPKLTELKPEKIRLMSDLVTRRNQLLTMQTMEKNRHQILSKTLLSTIKPILTALKNQITKIELKIQKLIEECTEYQSKNIILQSMP
GIGKIAAASIISNVPELGYITNKQAASLIGVAPMTKESGDYKGKRVIQGGRAQVRTVLYMAMMSAMQCNPVFKAIYQRLLGLGKPKKVAIIACVRKMVVI
LNSMLRDGVMWDENTGENKLLTP
Blast result :
Comments
There is one copy of ISSde13 encoded in the Shewanella denitrificans genome. The ISSde13 transposase has 75% identity to that IS492
References
1] Romine, M. F. (2008) Direct submission.