ISSde11
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_007954 | ND | Shewanella denitrificans | Shewanella denitrificans OS217 |
DNA section
IS Length : 1525 bp
Ends
IR Length : 12
IRL : tgatgagATGGACGCTCCCTAATACGGCGTCAATGCGCCAAACTGATGTT
IRR : -ccatatATGGACGCTCCCGGTGAGTCAAGGCAATAATCTGCTCACCTAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTTTTGTGGG | CCGAATTTTT | 0 | |
| ATAAATTGGA | TTTCGTTGTT | 0 |
DNA sequence
TGATGAGATGGACGCTCCCTAATACGGCGTCAATGCGCCAAACTGATGTTGAACCATACAGTTACTTAAGGAGCGTCCACCATGAAAGTTAGCACTATTT
CGATTGATTTGGCAAAAAATGTATTTCAACTATTGGGGATGGATAAACACGCCAAGCAAGTGTTCAGCAAGCGCTTAAATCGCACACAGCTGAGCGAGTT
CATGTCGCAGCAGCCAGTCTGTGATGTGGTCTTTGAGGCGTGTTATTCTTCCCATTACTGGGGGCGTAAGTTTCTTGCCATGGGGCATAACGTTAAGCTC
ATTCCAGCCCAGCATGTCACGCCCTTTGTACGCGGCAGCAAGAACGATAAAAATGATGCCATGGCGATTTATGAAGCCAATTTTAGGCCCAACATTCGCT
TTGTGCCGATTAAAACCGAAGCCCAACAAGAGATATTGATGCTGCACCGCGTCAGAGAGCGCTTGGTAAAACAAAGAACGGCCTGCACCAATCAAATTCG
TGGTGTGTTAGTGGATTTCGGTATTTGTTTTCCACAAGGTCACAGTGCGTTTGAGCGAGCCATGTGGGACATCATTAACGATGAGTCACAGCGGCCTATC
ATCAAGTTAATGGCCAATGATTTCTGGGATGAATACCAGACTGTGAGTACCCGCTTAGACCGCATTAACCGCCTGATAAAACAGCTGGTAGAGCAAGACC
CTAATGGCAAAATCTTATTAAGTATTCCAGGTGTTGGCCCCATTATCGCTTCAGCGTTTGCCGCTGCCATTGGTGCAGGGCAAGCCTTTAATAGCGCTAA
AGAATTAGCAGTCTGGCTAGGGTTAACCCCACAACAATTCGCCTCAGGCAATAAGAGTATTAATGGCAGTATCACCAAACGCGGCGACGGCTACTTACGC
AAACAACTTATTCACGGTGCCAGAACCGTAGTCAGCCATGCAAGTAAGAAAAATGATGATTTAAATCAGTGGATAACCCAATTAAGAAACCGTAAAAGCA
TCTGCACAACTGTGGTTGCCACCGCTCATCGACTCGCTAGGCTGATGTGGATTTTATTGCACAAGCAAGTGCCCTATGCGCCGCAATACGGCGCTTATCA
AGGCATAAGCCATGAAGCCAATTAACCCTGTTATCGCTATCTTGCTCAGCTCGGTCGTGCCAAGGGCTTATAGCCCGTCTGGATGATAAGAGCGGCAAGA
TAGCACCTAATACTCAAGGTTGTTGTTAACGATGAAGAAATGGCTCAGTCCAACCAGTGTAAGCCCGAACAGGCCAAGGATGGGGTAACCCAATCCGTAT
GGGTGTTTCACATTTACAGGCGCAGTGGTACGGATTTAATTAGGGGCAGCACATTCAGACGAATGCGTGCATAGCCCGTATATATGGCAGTACAACCGCT
TTTAGCGGAAATGAGTCGCATCAATAACAATGGCAGGAGTAAAGCAGTTGAACAGAAAACTAAGGCCCAAAAAGCCTTAGGTGAGCAGATTATTGCCTTG
ACTCACCGGGAGCGTCCATATATGG
CGATTGATTTGGCAAAAAATGTATTTCAACTATTGGGGATGGATAAACACGCCAAGCAAGTGTTCAGCAAGCGCTTAAATCGCACACAGCTGAGCGAGTT
CATGTCGCAGCAGCCAGTCTGTGATGTGGTCTTTGAGGCGTGTTATTCTTCCCATTACTGGGGGCGTAAGTTTCTTGCCATGGGGCATAACGTTAAGCTC
ATTCCAGCCCAGCATGTCACGCCCTTTGTACGCGGCAGCAAGAACGATAAAAATGATGCCATGGCGATTTATGAAGCCAATTTTAGGCCCAACATTCGCT
TTGTGCCGATTAAAACCGAAGCCCAACAAGAGATATTGATGCTGCACCGCGTCAGAGAGCGCTTGGTAAAACAAAGAACGGCCTGCACCAATCAAATTCG
TGGTGTGTTAGTGGATTTCGGTATTTGTTTTCCACAAGGTCACAGTGCGTTTGAGCGAGCCATGTGGGACATCATTAACGATGAGTCACAGCGGCCTATC
ATCAAGTTAATGGCCAATGATTTCTGGGATGAATACCAGACTGTGAGTACCCGCTTAGACCGCATTAACCGCCTGATAAAACAGCTGGTAGAGCAAGACC
CTAATGGCAAAATCTTATTAAGTATTCCAGGTGTTGGCCCCATTATCGCTTCAGCGTTTGCCGCTGCCATTGGTGCAGGGCAAGCCTTTAATAGCGCTAA
AGAATTAGCAGTCTGGCTAGGGTTAACCCCACAACAATTCGCCTCAGGCAATAAGAGTATTAATGGCAGTATCACCAAACGCGGCGACGGCTACTTACGC
AAACAACTTATTCACGGTGCCAGAACCGTAGTCAGCCATGCAAGTAAGAAAAATGATGATTTAAATCAGTGGATAACCCAATTAAGAAACCGTAAAAGCA
TCTGCACAACTGTGGTTGCCACCGCTCATCGACTCGCTAGGCTGATGTGGATTTTATTGCACAAGCAAGTGCCCTATGCGCCGCAATACGGCGCTTATCA
AGGCATAAGCCATGAAGCCAATTAACCCTGTTATCGCTATCTTGCTCAGCTCGGTCGTGCCAAGGGCTTATAGCCCGTCTGGATGATAAGAGCGGCAAGA
TAGCACCTAATACTCAAGGTTGTTGTTAACGATGAAGAAATGGCTCAGTCCAACCAGTGTAAGCCCGAACAGGCCAAGGATGGGGTAACCCAATCCGTAT
GGGTGTTTCACATTTACAGGCGCAGTGGTACGGATTTAATTAGGGGCAGCACATTCAGACGAATGCGTGCATAGCCCGTATATATGGCAGTACAACCGCT
TTTAGCGGAAATGAGTCGCATCAATAACAATGGCAGGAGTAAAGCAGTTGAACAGAAAACTAAGGCCCAAAAAGCCTTAGGTGAGCAGATTATTGCCTTG
ACTCACCGGGAGCGTCCATATATGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1044 bp | 347 aa | 82 | 1125 | + | No |
Chemistry : DEDD
ORF sequence :
MKVSTISIDLAKNVFQLLGMDKHAKQVFSKRLNRTQLSEFMSQQPVCDVVFEACYSSHYWGRKFLAMGHNVKLIPAQHVTPFVRGSKNDKNDAMAIYEAN
FRPNIRFVPIKTEAQQEILMLHRVRERLVKQRTACTNQIRGVLVDFGICFPQGHSAFERAMWDIINDESQRPIIKLMANDFWDEYQTVSTRLDRINRLIK
QLVEQDPNGKILLSIPGVGPIIASAFAAAIGAGQAFNSAKELAVWLGLTPQQFASGNKSINGSITKRGDGYLRKQLIHGARTVVSHASKKNDDLNQWITQ
LRNRKSICTTVVATAHRLARLMWILLHKQVPYAPQYGAYQGISHEAN
FRPNIRFVPIKTEAQQEILMLHRVRERLVKQRTACTNQIRGVLVDFGICFPQGHSAFERAMWDIINDESQRPIIKLMANDFWDEYQTVSTRLDRINRLIK
QLVEQDPNGKILLSIPGVGPIIASAFAAAIGAGQAFNSAKELAVWLGLTPQQFASGNKSINGSITKRGDGYLRKQLIHGARTVVSHASKKNDDLNQWITQ
LRNRKSICTTVVATAHRLARLMWILLHKQVPYAPQYGAYQGISHEAN
Blast result :
Comments
There are 2 full length and 3 truncated copies of the ISSde11 transposase encoded in the Shewanella denitrificans genome. This transposase has 85% identity to the ISShfr3 transposase. The terminal repeat starts at position 8 and 7 relative to the 5' and 3' ends of the element, respectively.
References
1] Romine, M. F. (2008) Direct submission.