ISSba17
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009052 | ND | Shewanella baltica | Shewanella baltica OS233 Shewanella baltica OS155 |
DNA section
IS Length : 1072 bp
Ends
IR Length : 22/28
IRL : CAGAATTCAGATAATAAGTGCAACGCTCGGTCAAAATGGTGAGGAGGGAG
IRR : TGAATTCAAGTCCGAAGTGCAACGCTAGGCCGCCTTTCTTAGCTCTGCAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACAACGAGAC | CCAGATACTG | 0 | |
ACTTATTAGA | CC | GACAAACCTT | 2 |
TTTCACACCC | ACCACCTAAA | 0 | |
ACCAAAGACT | C | CACTCATAGT | 1 |
DNA sequence
CAGAATTCAGATAATAAGTGCAACGCTCGGTCAAAATGGTGAGGAGGGAGTTAGCTGCTGATAAGCTACCCCTCTTCCGACCAAAGATGAGCGAGTAACC
ATGAACTACCAGCAGCTAACTGAGGGGCAACGATACCAGATTGCCCTGCTTTATAAAGAGAATTGTAGTTGTCGTGAGATTGGGCAGCGGGTCGGGGTCA
GTAAATCTACGATTTCCCGTGAACTCAGGCGCAATGGTACAACAGCGGGTTATGTTGCGCAGCATGCTCATAGTCAGTGTGAGCAGCGACGGGGTGTGGC
AGCAAAGCGGTCTGTAAGCCAGAGTACCATTGAGTTTGTTGAGTTTGCTCTGGAGTGGAAGTGGAGCCCTGAGCAGATAAGTGCTGTGGCAAAATTGATT
GGTCTTTCGGTCAGTCATGAGTGGATTTATCAGTATGTCTTTGCGAATAAATCTCGTGGTGGCGTTCTGTATGAACATCTCAGGCAAGGTAAGCGTCGTT
ATCGCAAAGGGTATGGGCAGAAGCGAGGAGGTATCCCTGACGCGGTTTCCATAGAGCTACGCCCTGCTATTGTTGATGAGCGTGCTCGCCTTGGGGACTG
GGAGGCCGACCTGGTGCTGGGTAAACAGGGAACCGGTGCAATCGTCACGCTGGCTGAGCGTAAGAGTCGAATTTATCTGACAAAAAAAGTTTTTTCAAAG
GATGCGATGGAGGTCAGCAAAGCGATTATCTCAATGTTGAGTGACTACAAGGATGCGTGCCACACGATAACCTTCGACAATGGTCGTGAGTTCAGCGAGC
ACAAGGTGATAGCGGAGGCACTGGAGGCGGAGATGTATTTTGCCCATCCCTACTCGTCGCAGGAGCGTGGGCTCAACGAGAACACGAACGGACTTCTGCG
GCAGTTTATCCCTAAAGGAACAGATCTCAGAACAGTGTCAGATGAGGACTTACAGCGCTATCAGGGCGCACTGAACAGCAGGCCACGTAAGTGCCTAGGG
TTCAGACAACCTTCGGTGGTGTTTGCAGAGCTAAGAAAGGCGGCCTAGCGTTGCACTTCGGACTTGAATTCA
ATGAACTACCAGCAGCTAACTGAGGGGCAACGATACCAGATTGCCCTGCTTTATAAAGAGAATTGTAGTTGTCGTGAGATTGGGCAGCGGGTCGGGGTCA
GTAAATCTACGATTTCCCGTGAACTCAGGCGCAATGGTACAACAGCGGGTTATGTTGCGCAGCATGCTCATAGTCAGTGTGAGCAGCGACGGGGTGTGGC
AGCAAAGCGGTCTGTAAGCCAGAGTACCATTGAGTTTGTTGAGTTTGCTCTGGAGTGGAAGTGGAGCCCTGAGCAGATAAGTGCTGTGGCAAAATTGATT
GGTCTTTCGGTCAGTCATGAGTGGATTTATCAGTATGTCTTTGCGAATAAATCTCGTGGTGGCGTTCTGTATGAACATCTCAGGCAAGGTAAGCGTCGTT
ATCGCAAAGGGTATGGGCAGAAGCGAGGAGGTATCCCTGACGCGGTTTCCATAGAGCTACGCCCTGCTATTGTTGATGAGCGTGCTCGCCTTGGGGACTG
GGAGGCCGACCTGGTGCTGGGTAAACAGGGAACCGGTGCAATCGTCACGCTGGCTGAGCGTAAGAGTCGAATTTATCTGACAAAAAAAGTTTTTTCAAAG
GATGCGATGGAGGTCAGCAAAGCGATTATCTCAATGTTGAGTGACTACAAGGATGCGTGCCACACGATAACCTTCGACAATGGTCGTGAGTTCAGCGAGC
ACAAGGTGATAGCGGAGGCACTGGAGGCGGAGATGTATTTTGCCCATCCCTACTCGTCGCAGGAGCGTGGGCTCAACGAGAACACGAACGGACTTCTGCG
GCAGTTTATCCCTAAAGGAACAGATCTCAGAACAGTGTCAGATGAGGACTTACAGCGCTATCAGGGCGCACTGAACAGCAGGCCACGTAAGTGCCTAGGG
TTCAGACAACCTTCGGTGGTGTTTGCAGAGCTAAGAAAGGCGGCCTAGCGTTGCACTTCGGACTTGAATTCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 101 | 1048 | + | No |
Chemistry : DDE
ORF sequence :
MNYQQLTEGQRYQIALLYKENCSCREIGQRVGVSKSTISRELRRNGTTAGYVAQHAHSQCEQRRGVAAKRSVSQSTIEFVEFALEWKWSPEQISAVAKLI
GLSVSHEWIYQYVFANKSRGGVLYEHLRQGKRRYRKGYGQKRGGIPDAVSIELRPAIVDERARLGDWEADLVLGKQGTGAIVTLAERKSRIYLTKKVFSK
DAMEVSKAIISMLSDYKDACHTITFDNGREFSEHKVIAEALEAEMYFAHPYSSQERGLNENTNGLLRQFIPKGTDLRTVSDEDLQRYQGALNSRPRKCLG
FRQPSVVFAELRKAA
GLSVSHEWIYQYVFANKSRGGVLYEHLRQGKRRYRKGYGQKRGGIPDAVSIELRPAIVDERARLGDWEADLVLGKQGTGAIVTLAERKSRIYLTKKVFSK
DAMEVSKAIISMLSDYKDACHTITFDNGREFSEHKVIAEALEAEMYFAHPYSSQERGLNENTNGLLRQFIPKGTDLRTVSDEDLQRYQGALNSRPRKCLG
FRQPSVVFAELRKAA
Blast result :
Comments
There are 4 copies of ISSba17 encoded in the Shewanella baltica OS155 chromosome. The transposase in 1 copy is predicted to undergo a programmed frameshift. The ISSba17 transposase has 94% identity to ISSba10.
References
1] Romine, M. F. (2008) Direct submission.