ISSba12
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009036 | ND | Shewanella baltica | Shewanella baltica OS155 |
DNA section
IS Length : 1257 bp
Ends
IR Length : 17/19
IRL : GTAGTGTTCAAATTTCTGTGTCATTTCTTTAAGCTATACCAAAAAGAGAT
IRR : GAGGCTGTTCATAATTCTGTGTCAGGTTAATTTCACAGATCGATATGGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACTTTGCTTG | GGTAAGTCTG | 0 |
DNA sequence
GTAGTGTTCAAATTTCTGTGTCATTTCTTTAAGCTATACCAAAAAGAGATGATTTATGACCACACCTACTTTTGATATCAATGCTGCCATTCAAGCACTA
CGTGAAGGTAAAGACCTCACCGGCAAGGATGGCATCTTAACCCCTTTGATTAAGCAACTCACTGAAGCGGCCTTAGCGGCAGAGTTGGACGGCCATTTGG
CGAGCACTGAAGGTGCCAATCGTAAAAACGGTAAAACCACTAAAACGGTTAAAAGCCCCATTGGCAACTTCGAGCCTCAATTAGTCAAAAAGCACCAAAC
CCAACTTACCGATGAAATGGAGCGTAAAATCATAGGCTTATTTTCATTAGGCTCCAGCTACCAAGATATTCGCGCGCATATCGAAGACATGTACGGCATG
TCGGTGTCCAACGGCACGGTGAACGCCATTACAGACAAGTTACTACCTGAGCTTCAAGCATGGCGTGAACGCGAGCTAGAGCCGCTTTACCCCGTCATAT
GGCTCGATGCCATTCACTATAAAATCAAAGAGAATGGCCGCTTTATCAGCAAAGCGGTTTATACTATTTTGGCGCTTAATGTCGAAGGTAAAAAAGAGCT
ATTAGGCTTATATCTGTCTGATAATGAAGGCGCTCACCATTGGCTAAGCGTGCTGACCGACCTGTATAACCGTGGCGTCAAAGACATCCTCATTGCCTGC
GTTGATGGCCTTAAAGGCTTTCCTGAAGCGATTGAAACCATTTACCCGCAGACGGAAGTACAACTGTGTGTCATCCACCAAATTCGCAACTCAATGAAGT
ATGTTGCTTCAAAGCATCAAAAGGCCTTCATGGCGGATTTAAAGTGCGTTTATAAGGCAGCCACCTTGAATGCGGCCGAGATGGCACTGGATGAGCTCGA
GACAAAATGGGGCGATAAATACCCCGTGGTGATTAAATCATGGCGTAACAAATGGGCGCTGCTATCGGTTTATTTCAAATACCCTGACTACGTTCGCACC
GCTATCTACACCACCAATGCGGTTGAAGCGGTACATCGACAATTCAGGAAGTTAACCAAAACGAAGGGCGGTTTTGCTAACGAGAACAGTTTACTCAAGC
TGCTTTACGCGGGTATATTGAAGGCCTCTGAGCGCTGGACCCACCCCATCCAAAATTGGAATTTGACACTATCACAGCTCTCAATCCATTTTGAGGGGCG
CTTAGAAAACCATATCGATCTGTGAAATTAACCTGACACAGAATTATGAACAGCCTC
CGTGAAGGTAAAGACCTCACCGGCAAGGATGGCATCTTAACCCCTTTGATTAAGCAACTCACTGAAGCGGCCTTAGCGGCAGAGTTGGACGGCCATTTGG
CGAGCACTGAAGGTGCCAATCGTAAAAACGGTAAAACCACTAAAACGGTTAAAAGCCCCATTGGCAACTTCGAGCCTCAATTAGTCAAAAAGCACCAAAC
CCAACTTACCGATGAAATGGAGCGTAAAATCATAGGCTTATTTTCATTAGGCTCCAGCTACCAAGATATTCGCGCGCATATCGAAGACATGTACGGCATG
TCGGTGTCCAACGGCACGGTGAACGCCATTACAGACAAGTTACTACCTGAGCTTCAAGCATGGCGTGAACGCGAGCTAGAGCCGCTTTACCCCGTCATAT
GGCTCGATGCCATTCACTATAAAATCAAAGAGAATGGCCGCTTTATCAGCAAAGCGGTTTATACTATTTTGGCGCTTAATGTCGAAGGTAAAAAAGAGCT
ATTAGGCTTATATCTGTCTGATAATGAAGGCGCTCACCATTGGCTAAGCGTGCTGACCGACCTGTATAACCGTGGCGTCAAAGACATCCTCATTGCCTGC
GTTGATGGCCTTAAAGGCTTTCCTGAAGCGATTGAAACCATTTACCCGCAGACGGAAGTACAACTGTGTGTCATCCACCAAATTCGCAACTCAATGAAGT
ATGTTGCTTCAAAGCATCAAAAGGCCTTCATGGCGGATTTAAAGTGCGTTTATAAGGCAGCCACCTTGAATGCGGCCGAGATGGCACTGGATGAGCTCGA
GACAAAATGGGGCGATAAATACCCCGTGGTGATTAAATCATGGCGTAACAAATGGGCGCTGCTATCGGTTTATTTCAAATACCCTGACTACGTTCGCACC
GCTATCTACACCACCAATGCGGTTGAAGCGGTACATCGACAATTCAGGAAGTTAACCAAAACGAAGGGCGGTTTTGCTAACGAGAACAGTTTACTCAAGC
TGCTTTACGCGGGTATATTGAAGGCCTCTGAGCGCTGGACCCACCCCATCCAAAATTGGAATTTGACACTATCACAGCTCTCAATCCATTTTGAGGGGCG
CTTAGAAAACCATATCGATCTGTGAAATTAACCTGACACAGAATTATGAACAGCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1170 bp | 389 aa | 56 | 1225 | + | No |
Chemistry : DDE
ORF sequence :
MTTPTFDINAAIQALREGKDLTGKDGILTPLIKQLTEAALAAELDGHLASTEGANRKNGKTTKTVKSPIGNFEPQLVKKHQTQLTDEMERKIIGLFSLGS
SYQDIRAHIEDMYGMSVSNGTVNAITDKLLPELQAWRERELEPLYPVIWLDAIHYKIKENGRFISKAVYTILALNVEGKKELLGLYLSDNEGAHHWLSVL
TDLYNRGVKDILIACVDGLKGFPEAIETIYPQTEVQLCVIHQIRNSMKYVASKHQKAFMADLKCVYKAATLNAAEMALDELETKWGDKYPVVIKSWRNKW
ALLSVYFKYPDYVRTAIYTTNAVEAVHRQFRKLTKTKGGFANENSLLKLLYAGILKASERWTHPIQNWNLTLSQLSIHFEGRLENHIDL
SYQDIRAHIEDMYGMSVSNGTVNAITDKLLPELQAWRERELEPLYPVIWLDAIHYKIKENGRFISKAVYTILALNVEGKKELLGLYLSDNEGAHHWLSVL
TDLYNRGVKDILIACVDGLKGFPEAIETIYPQTEVQLCVIHQIRNSMKYVASKHQKAFMADLKCVYKAATLNAAEMALDELETKWGDKYPVVIKSWRNKW
ALLSVYFKYPDYVRTAIYTTNAVEAVHRQFRKLTKTKGGFANENSLLKLLYAGILKASERWTHPIQNWNLTLSQLSIHFEGRLENHIDL
Blast result :
Comments
There is one copy of ISSba12 encoded on plasmid 2 of Shewanella baltica OS155. The ISSba12 transposase has 96% identity with ISSod5.
References
[1] Romine, M. F. (2008) Direct submission.