ISSba12

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009036 ND Shewanella baltica
Shewanella baltica OS155
DNA section
IS Length : 1257 bp

Ends


IR Length : 17/19

IRL : GTAGTGTTCAAATTTCTGTGTCATTTCTTTAAGCTATACCAAAAAGAGAT
IRR : GAGGCTGTTCATAATTCTGTGTCAGGTTAATTTCACAGATCGATATGGTT

Insertion site


Left flankDirect repeatRight flankDR Length
ACTTTGCTTGGGTAAGTCTG0

DNA sequence

GTAGTGTTCAAATTTCTGTGTCATTTCTTTAAGCTATACCAAAAAGAGATGATTTATGACCACACCTACTTTTGATATCAATGCTGCCATTCAAGCACTA
CGTGAAGGTAAAGACCTCACCGGCAAGGATGGCATCTTAACCCCTTTGATTAAGCAACTCACTGAAGCGGCCTTAGCGGCAGAGTTGGACGGCCATTTGG
CGAGCACTGAAGGTGCCAATCGTAAAAACGGTAAAACCACTAAAACGGTTAAAAGCCCCATTGGCAACTTCGAGCCTCAATTAGTCAAAAAGCACCAAAC
CCAACTTACCGATGAAATGGAGCGTAAAATCATAGGCTTATTTTCATTAGGCTCCAGCTACCAAGATATTCGCGCGCATATCGAAGACATGTACGGCATG
TCGGTGTCCAACGGCACGGTGAACGCCATTACAGACAAGTTACTACCTGAGCTTCAAGCATGGCGTGAACGCGAGCTAGAGCCGCTTTACCCCGTCATAT
GGCTCGATGCCATTCACTATAAAATCAAAGAGAATGGCCGCTTTATCAGCAAAGCGGTTTATACTATTTTGGCGCTTAATGTCGAAGGTAAAAAAGAGCT
ATTAGGCTTATATCTGTCTGATAATGAAGGCGCTCACCATTGGCTAAGCGTGCTGACCGACCTGTATAACCGTGGCGTCAAAGACATCCTCATTGCCTGC
GTTGATGGCCTTAAAGGCTTTCCTGAAGCGATTGAAACCATTTACCCGCAGACGGAAGTACAACTGTGTGTCATCCACCAAATTCGCAACTCAATGAAGT
ATGTTGCTTCAAAGCATCAAAAGGCCTTCATGGCGGATTTAAAGTGCGTTTATAAGGCAGCCACCTTGAATGCGGCCGAGATGGCACTGGATGAGCTCGA
GACAAAATGGGGCGATAAATACCCCGTGGTGATTAAATCATGGCGTAACAAATGGGCGCTGCTATCGGTTTATTTCAAATACCCTGACTACGTTCGCACC
GCTATCTACACCACCAATGCGGTTGAAGCGGTACATCGACAATTCAGGAAGTTAACCAAAACGAAGGGCGGTTTTGCTAACGAGAACAGTTTACTCAAGC
TGCTTTACGCGGGTATATTGAAGGCCTCTGAGCGCTGGACCCACCCCATCCAAAATTGGAATTTGACACTATCACAGCTCTCAATCCATTTTGAGGGGCG
CTTAGAAAACCATATCGATCTGTGAAATTAACCTGACACAGAATTATGAACAGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1170 bp389 aa561225+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTTPTFDINAAIQALREGKDLTGKDGILTPLIKQLTEAALAAELDGHLASTEGANRKNGKTTKTVKSPIGNFEPQLVKKHQTQLTDEMERKIIGLFSLGS
SYQDIRAHIEDMYGMSVSNGTVNAITDKLLPELQAWRERELEPLYPVIWLDAIHYKIKENGRFISKAVYTILALNVEGKKELLGLYLSDNEGAHHWLSVL
TDLYNRGVKDILIACVDGLKGFPEAIETIYPQTEVQLCVIHQIRNSMKYVASKHQKAFMADLKCVYKAATLNAAEMALDELETKWGDKYPVVIKSWRNKW
ALLSVYFKYPDYVRTAIYTTNAVEAVHRQFRKLTKTKGGFANENSLLKLLYAGILKASERWTHPIQNWNLTLSQLSIHFEGRLENHIDL

 

Blast result :
Comments
There is one copy of ISSba12 encoded on plasmid 2 of Shewanella baltica OS155. The ISSba12 transposase has 96% identity with ISSod5.
References
[1] Romine, M. F. (2008) Direct submission.