ISMno4

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011894 ND Methylobacterium nodulans
Methylobacterium nodulans ORS 2060
DNA section
IS Length : 1385 bp

Ends


IR Length : 17/23

IRL : GAATTACACGCTCTATGGGGACATGAGCGCCCGCGCCAACGTTGCAGGGA
IRR : GTAATTACCCACGCCTGTGATGGCGGATTCAGGCGCCGATGGTCTGGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
TGTTCTCCTCGTAGTTTACG0

DNA sequence

GAATTACACGCTCTATGGGGACATGAGCGCCCGCGCCAACGTTGCAGGGATCGGATTTCGCTGATTCCCTCGTGGGATGAGCCGCCGCGAGCTTGAGCGC
CTGAGCAAGGAGGAGCTGATCGAGCTGGTGCTGCGGCTGCAGCGCCCAGAGAAGACCTCGCGCACCTCCTCCAAGCCGCCCTCCACCGATCGCAAGGAGC
GGCGCGAGCAGGCCAGACCCGGCGGCGCCAAGCCCGGCCACGAAGGCCACAGCCGGGTGATCAGCGGGGATCCCGATGCGGTCGTCGAGCATCGTCCGGA
TCGCTGCTCGTGCTGTGGCGGCGCTCTGCACGGTGATCTTCCCGCCGAGGTCGTCAGCGTCGCCGAGCAGGTCGAGTTGCCCGAGGTGACGCCGATCGTC
ACCCAGCATCAGCGGCTCGCGGTTCTCTGCCCGTCGTGCGGGGCTCACGTCGTCGCTCCGGTGCCTTCGGCCGCGCGCGGCACTCCGTTCGGCCCGCGGC
TGCACGCGGTGGCGACCTACCTCAAGACCTTCCAGGCGCTCTCGTATGAGCGGCTGCAGGCGGCGCTGTCGGATTTGTTCGGGCTCACGCTCAGCCAGGG
CGGGCTGATGAACATGCTCCGCCGCGCACAGGGCTACTTCCGTCCTGGCCGCGAGGCGGCCGTGTCGGCGCTGCGCCGGGCCGCGGTCGTCGCCTCCGAC
GAGACGGGCGTCCGGATCGAGGGCTGCACCGCCTACCATTGGGTGTTCCGCTCAGCCGAGGCGGTGGTCCATCACGCCTCCCCGACGCGCGGCGCCGTCG
TGGTGCACGAGATGATGGACGGCCATCGGCCCGTGGTGTGGATCTCTGATCGCTACACCGCCCAACAAGGCCACGCGGCCAAACATCAGACCTGCCTGGC
GCATCTGGCCCGTGACGTCGCCTATGCGGTCGAGGTCAGCGACGACCCGGGGCCACTTCGCCTGCAGCTCTGGCTGCAGGCGGTGTTCGCGCTGGCCGAG
CGCGTCACCGACTTGGCGGCCTCGACGCTCTCGGCCAAGCGCCGGGCGCTGGAGCGGCGGCTGTCGGAGATCCTGTCCGCCCCGAGCCGCTGCGATCTGA
CCCGCGATCTGCAGGCCAAGATCGGCCGCGCCCGCGATCAGCTCCTGGTCTTCCTCGATCATCCCGGCACAGTCGAGATTACCAACAACGGCTGCGAGCG
CCTGCTGCGCCCGGCTGTCGTGCAGCGCAAGGTCACCAACGGCTACCGTGCGAGGTGGGCGGCCAACGGAGAGGCCGATCTCCGCACCGTCGTCGACACA
GCCCGCCTCACCGGCGCCAGGCCGTTCGCCACCATCCTCCAGACCATCGGCGCCTGAATCCGCCATCACAGGCGTGGGTAATTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1281 bp426 aa771357+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRRELERLSKEELIELVLRLQRPEKTSRTSSKPPSTDRKERREQARPGGAKPGHEGHSRVISGDPDAVVEHRPDRCSCCGGALHGDLPAEVVSVAEQVE
LPEVTPIVTQHQRLAVLCPSCGAHVVAPVPSAARGTPFGPRLHAVATYLKTFQALSYERLQAALSDLFGLTLSQGGLMNMLRRAQGYFRPGREAAVSALR
RAAVVASDETGVRIEGCTAYHWVFRSAEAVVHHASPTRGAVVVHEMMDGHRPVVWISDRYTAQQGHAAKHQTCLAHLARDVAYAVEVSDDPGPLRLQLWL
QAVFALAERVTDLAASTLSAKRRALERRLSEILSAPSRCDLTRDLQAKIGRARDQLLVFLDHPGTVEITNNGCERLLRPAVVQRKVTNGYRARWAANGEA
DLRTVVDTARLTGARPFATILQTIGA

 

Blast result :
Comments
ISMno4 is 88% aa similar to ISMno2.
References
1] ISfinder annotation (2008).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Marx,C.J. and Richardson,P. (2007) Direct Submission GenBank.