ISSba11

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009052 ND Shewanella baltica
Shewanella baltica OS155
DNA section
IS Length : 2394 bp

Ends


IR Length : 44/54

IRL : TATTGCGCGACAATTACCCTGACCGGTTCAGCGACAATTAGAATGGCCGG
IRR : TATAGCGCGTCAATTAGCTTGGCCGATCCAGCGACAATTAACTTGGCCGG

Insertion site


Left flankDirect repeatRight flankDR Length
TGGTCAGGGCGAAGGCAATT0
CAGCGAAGGCGAACGTGATT0
TATGAACGTGCAGGGCGTAC0
CGTTGTCCTTGACGACTGAC0
TTGGCAAGGCGACAACTGCT0
CTGCATCGGGAACATACCAT0
ACCCTTAGACGTAGGAGCTT0
TTGTAACGTGAACGGGTGAT0
CAAACCCATCACCATCGAAA0
CTTACACACTCACGTTACTG0
TGTGCTTCCACGGCTTTGCCATTT4
AAACCTAACACATCATAATCAGTG4
ATCAAATACCCACTATGCTGGATTTA6
ATTTGAAAGTACCATTACTTCCTGAA6
TTACTTGAATGACTTCAATATTTTCT6
TACATTGTCCGACGACTAAAACGACA6
TCATAATTCATAGCCCCAACAACCAT6
GGGGCAACAAAGACATTTACTAAAAA6
ACATTTCAACTGTTCTTCCCTTCACA6
GCTTAGCAACAGCAAGAGAATGGGTG6
ATCGAATTAAGAAGGCGTAATTATAC6
TTTAACTTCCCTATAGACACTAGAGC6
TTGCAACTATCCCTTAAGTAATTATA6
TCAAAATTTGAACGTTACACTAAACG6
ACCACGGTATAAAGACTCAAAGCGAT6
TCTACCCATGATCCCCTGACCAAGTT6
AACAAGGTATCACCTTAGAAGAATCT6
CTGTAGAAACGGTGTCTATGACATCT6
TGCATCATTAAGCGAGCAAGTTTATT6
GCGTCTGTGACACCTGATAAACTGAG6
AAGTGTATCACTACGGGCTTAGTGACT7
GAAAGGCTAAGTGGGTGGGATTTATGA7
GAAAGTCAAACCACTACGCTGGCAGCG7
CTTTTATTTCGTCTCAGGCTAAATCTT7

DNA sequence

TATTGCGCGACAATTACCCTGACCGGTTCAGCGACAATTAGAATGGCCGGTTGATCTGATACATTCTGGACAAAGATTCTAAGGGAGTTCTTTGTGCCAG
GTCATCGAATTACAGATCAACAAATAAGGCTATTTATGTCTAAACGAAAAGATCACCTTCAAGTTACTGCGGCGAGCAAAGCTGGCATTTCGGAACGCTC
TGCAAGACGAATTGAATCCGGCCAGCGACAATTAGGCCCATCAAAACCTCGAAACTACCGTACTCGTACCGACCCCCTAGAACTTGTATGGGACCCCGTC
GTTTTACCACTCCTACAACTTTCTGACACTATTACTCCTGTTGGCGTGTTTGATTATCTTTGCGAAGAATATTCAGATGTTTTCGCTGTAACGCTAAGGC
GAACCCTTGAACGACGTATTCAAAAATGGCGACAGATAAATGGCCAAGATAAAGAGGTTATTTTTCGCCAAGTTAAAGAATTCGGTCAGTTGGGGATCAT
GGATTTCACTTGGGCGGATTTCATTGTCACGATTAGAGGAACAACTCTTAAGCATCGATTTTTTAACTATCGATTACCTGCAAGTGGTTGGAGTTACGTT
CAAGTCGTATACGGCGGAGAAAGCTTCGTAGCTGTTGCTACAGGCTTACAAAATGCCTTTGAACAATCAAATGGTGTTCCACAGGAAGTCAGAACGGATA
GCTTGAGCGCTGCTTATAAAAACCATTCCAACGAAACATTATTTACTGAACGATTTTCAGAATTATCGATTCATTATGGTTTCAAACCTTCTAAAAATAA
CACCGGCATTGCCCATGAAAATGGTGCCATTGAAAGCGCCAACAATCATCTAAAAAACCAAATCCGACAAGCTTTGGCTATTCGTGGTTCAAGTGACTTT
GATAGCATTGACGAGTATGAAACATTTATTGATGACGTCGTCCAAAGACGTAATCGCCGTATTATGGCACTTCTCATCGATGAGCAACGACAATTACAAC
CCTTACCTAAATTTGAAAGTGTTAATTACGAAATTTACCCAGTAAAAGTATCGAGCACCAGTACGTTTCAGTTAAAACGAGTGACTTATTCAGTACCATC
CAGACTCGTCGGTGCAACATTGCGCGTGCATCTTTTCGATAAAAAATTAGATATCTATTGCCATGGAGTGCACACCGCCACGCTCACTCGCGTACATGCG
TCAGCAAATAATCGCGGTCATCAAATTAATTATCGTCACTTAATCGGTGCACTGATGAAAAAACCTCGAGCATTCAGGGGGGGCCAATGGCGAGACCAAC
TGCTTCCAAATGAAGACTATCGCCAAATATGGAAGAATGTCGATGCTCTACTAAGTGCTGATGAAGCAAGTCTTTATATGGTTAGGTTACTCAATATCGC
CAGTAAATCAGATCGTGAAGAAGCGGTAGGAAGATTCGTTCTCGAAGGGATAAATCTAGGGCAACGGCCAAACATAGTTGACTGTGAAGAACGTTTTTTA
AAAGACGAAGAGTGGGAATTTAACCCTAAAGTACAACAACATAGCTTAGCGTCTTATCAGCAAATTCTTGACGAGGTGAATGAATATGTCAGTTGAAACG
TTGCCTATTATTCTCAAAGAGCTTCGACTAGTGAGCTTACTTCCACATTGGCAACCGTTGGCTGAGAAAGCACGAGAGCAGCATTGGCCGGTGGAGCGTT
ACTTAGCTGAATTATGCCAATTAGAACTCAGTTGCAGAGAACAAAAGCGATTGCACCGAGGCTTAAAAGAAGCAACGTTACCAATAGGTAAATATCTTGA
CACCTATGATTTTAGCGAAGTTGAAGGCTTATCCAAGAAGCAAGTCTGGCATTTAGCCGATAATGCTGAGTGGTTGAAAACAGGAGATAATATCTTGCTG
TTCGGTGCCAGTGGTTTAGGTAAAACACATATTGCCGCTGGACTTGGTTATCGTCTTGTAGAGCAAGGGCATAGAGTTAAATTTATGAGTGCGAGCCTAC
TTGTGCAGCACCTGCAAAAAGCGAAAGAAGAGCTGAGATTGCCAGAAGCCCTAGTCAAATTGGACAGATTTGCAGTGTTAATCTTAGACGATCTAGGCTA
CGTGCAAAAAAGTACAGAAGAAACTAGCGTCTTGTTCGAGCTTATCGCGCATCGTTATGAAAGATATAGCCTAATAATAACCTCAAACCAATCATTCGAA
GATTGGGATAAGTTATTCAGTGACACAGTGATGACCGTAGCTGCAATCGATAGGCTGATCCACCACGCGAAAATTTTGCAATGCAAAGGAGAAAGCTACA
GGCGAAAAGAAGCCCAAAACAAACTAAATTAAACCGAGTCTCAACCGGCCAAGTTAATTGTCGCTGGATCGGCCAAGCTAATTGACGCGCTATA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1503 bp500 aa941596+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPGHRITDQQIRLFMSKRKDHLQVTAASKAGISERSARRIESGQRQLGPSKPRNYRTRTDPLELVWDPVVLPLLQLSDTITPVGVFDYLCEEYSDVFAVT
LRRTLERRIQKWRQINGQDKEVIFRQVKEFGQLGIMDFTWADFIVTIRGTTLKHRFFNYRLPASGWSYVQVVYGGESFVAVATGLQNAFEQSNGVPQEVR
TDSLSAAYKNHSNETLFTERFSELSIHYGFKPSKNNTGIAHENGAIESANNHLKNQIRQALAIRGSSDFDSIDEYETFIDDVVQRRNRRIMALLIDEQRQ
LQPLPKFESVNYEIYPVKVSSTSTFQLKRVTYSVPSRLVGATLRVHLFDKKLDIYCHGVHTATLTRVHASANNRGHQINYRHLIGALMKKPRAFRGGQWR
DQLLPNEDYRQIWKNVDALLSADEASLYMVRLLNIASKSDREEAVGRFVLEGINLGQRPNIVDCEERFLKDEEWEFNPKVQQHSLASYQQILDEVNEYVS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
745 bp248 aa15882332+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MSVETLPIILKELRLVSLLPHWQPLAEKAREQHWPVERYLAELCQLELSCREQKRLHRGLKEATLPIGKYLDTYDFSEVEGLSKKQVWHLADNAEWLKTG
DNILLFGASGLGKTHIAAGLGYRLVEQGHRVKFMSASLLVQHLQKAKEELRLPEALVKLDRFAVLILDDLGYVQKSTEETSVLFELIAHRYERYSLIITS
NQSFEDWDKLFSDTVMTVAAIDRLIHHAKILQCKGESYRRKEAQNKL

 

Blast result :
Comments
There are 33 intact and 3 degenerate copies of ISSba11 encoded in the S. baltica OS155 genome. All but 2 copies are encoded on the chromosome with the remaining to are encoded in plasmid 2. Orf1 has 40% identity with ISEc10 and Orf2 has 51% identity with ISAli13.
References
1] Romine, M. F. (2008) Direct submission