ISShfr7

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008345 ND Shewanella frigidimarina
Shewanella frigidimarina NCBM4000
DNA section
IS Length : 1611 bp

Ends


IR Length : 12/19

IRL : CTTGATACTCATTGAGCCCCCTCCCTAGCAAGCCGCATCAGCGGTATGCT
IRR : -----ACACATATGAGCCTTCCACCAGTCAATAGGCGAGCCTAACTTATT

Insertion site


Left flankDirect repeatRight flankDR Length
AACAGCAGCGCCGATTCACGGT0
TGTTTAACAATAGGCTTCTT0
TTTTGAGCAGTATGTGTATT0

DNA sequence

CTTGATACTCATTGAGCCCCCTCCCTAGCAAGCCGCATCAGCGGTATGCTTAAGGTGACTAAACCAACAGGAGAAAGCTCAATGAGATTTTATAATAACT
CACATCCATACTACTGTGGTATCGATTTACATGCGCGTTTACTTTATGTCTGTATCATTGATTCTAAAGGGGAAGTTGTAGCTCATAAAAAGATAGGTGC
CAGTAAAGATGACTTATTACTCATTCTAGAACCTTATATCGGCAATGTAATTGTCGGGGTTGAGTGCATGCATTGCTGGTATTGGGTGTCAGACTGGTGT
GCTGAACTTGGGATTGATTTTATCTTAGGTCATGCGCTTTATATGAAGGCGATTCACGGTGGTAAAACCAAAAATGATAAAGTCGATTCCTTTAAAATTT
CCACACTACTGCGTGGTGGTAACTTTCCAATAGCTTATGATTATCCAAGTGAAATGCGCGCAGCTCGTGATCTACTGCGCCGAAGAATGAAGATTGTCCG
TCACGGGGCCATGCTCAAAGGTCATGTGGTTAACACCAACAGCCAATACAATTTACCTGCCACTGAACTTAACCTTAAAAACATCTCTGCAAGAAAAAAA
CTTCGCGAGCAATATCAAGATCCTATCGTACAACGCAACATTGATTTAGACATGGCACTACTTGATTGTTATGCAAAGGAACTCGCACAGGTTGAATGGT
TCATTGAAAAACAGGCCAAAAATCATAATCCCGTCTATTTAGAATTACTGAAAACAGTACCAGGTATTGGCAAGATTTTGTCACTGACAATCCTCTATGA
AATCGGTGATATCAGTCGATTTGAGTCAGTACAAAAGTTTGCTTCATACTCTCGATTGGTCAAATGCAAAGCAGAATCAGCGGGTAAAACCTATGGTACC
AATGGCAATAAAATCGGTAATGCTCATTTGAAATGGGCATTCTCAGAAGCAGCGGTGCTGTACCTGCGAGGCAATGACAAAGCACGTAACTACCTTAATC
GATTACAAAAACGAATGAGTAAAGCAAAGGCGTTGTCTGCACTGGCACATAAGCTTGGTCGCTGCGTCTATTTCATGCTGAAGAACAAAACGGTGTTTGA
TGAACAACGATTCTTAAAAGGATAAGTCGCGCAATAAGGTGAGCTGAACGTCTAACTAGATACTCTTAAAAAGAGAAGCGAGCATGACCGTGAATGATGT
GGCTAATGAAGCAATGACTTCTCACCATCATCACTATGCCAAATGCTATTTAAGCTACATTGCCTTGATTAGACACCTTATTGGCGCGCATTGATAAATA
CAATCAACAAAGTCGTTTACACCCTAAATGAGCCTGAAACTAACTGTGCAAAAAGCACCTCTGACTTGAATAGTGCCATCTTAGGGTTAACCGATAAATG
TCTAGTGCCCCTGATATTTCAACGGATTGAAAAGAGTCAGGCAGCGATAAGATCGCACTAAGAGAGCCTCTATATGTGTTTGCTGTAAACGATGATTTGA
CAGCTAAATGACAGACGAAGTAGATGAATTTGTTGATTGATTTTAATTTGACTGCAAAAGCAGTCAAATAAGTTAGGCTCGCCTATTGACTGGTGGAAGG
CTCATATGTGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa821125+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MRFYNNSHPYYCGIDLHARLLYVCIIDSKGEVVAHKKIGASKDDLLLILEPYIGNVIVGVECMHCWYWVSDWCAELGIDFILGHALYMKAIHGGKTKNDK
VDSFKISTLLRGGNFPIAYDYPSEMRAARDLLRRRMKIVRHGAMLKGHVVNTNSQYNLPATELNLKNISARKKLREQYQDPIVQRNIDLDMALLDCYAKE
LAQVEWFIEKQAKNHNPVYLELLKTVPGIGKILSLTILYEIGDISRFESVQKFASYSRLVKCKAESAGKTYGTNGNKIGNAHLKWAFSEAAVLYLRGNDK
ARNYLNRLQKRMSKAKALSALAHKLGRCVYFMLKNKTVFDEQRFLKG

 

Blast result :
Comments
There are 3 copies of ISShfr7 encoded in the Shewanella frigidimarina chromosome. The terminal inverted repeats begin at 13 and 8 bp from the left and right end of the element, respectively. The ISShfr7 transposase has 52% identity with that of ISGsu4.
References
1] Romine, M. F. (2008) Direct submission.