ISShfr5
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008345 | ND | Shewanella frigidimarina | Shewanella frigidimarina NCBM4000 |
DNA section
IS Length : 2634 bp
Ends
IR Length : 10/14
IRL : TGCATATTCTCATGCATCGCGATCACCTAATACCATCTAAGCCGATCACC
IRR : TGCGTAATACCATGATGCCGATCGGTCAATACCATTCAAGCCGATCACTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTGAATTTGG | GGTGAC | CTTTAAACAG | 6 |
GCTAAATGAG | CTAGT | TCCATATAGC | 5 |
GCTAAATGAG | CTAGT | TCCATATAGC | 5 |
DNA sequence
TGCATATTCTCATGCATCGCGATCACCTAATACCATCTAAGCCGATCACCTAATACCATTCATCGCGATCACTCAATACCATCGATGCCGATCACTTTTC
GGTCAAAATAGTATTGAGTGATCGGCTTGAATAGTACCGTTCGTTTTTTGTACTTTTTTGTCTGCCCGTAGGTGTTTTTAACCGTTATTCTTTTCATTTT
TGATGATGAGAATGACCATGCCAACGGCACCTATTTCAATGCGTAAACTCAAAGAAATTTTAAGACTAAAATACGGCTGTAAACTCAGTCATCGTCAGAT
AGCAAAAAGCTTATCTGTTTCACCCTCAATCGTGTCTAAATATGCCTGTAAATCAGCAGAGCTAGACATTACTTGCTGGCCGCTTGATGAGAAGTGGGAT
GATAACTCTCTACAACAAGCGTTTTTCAAAACAAAGCCTCGTTTAAAAGGCTTTACCATTCCTGACTGGTCGTTAGTTCAACAAGAGCTTCGGCCTAAAA
CCATGACGTTGTTGCTGCTTTGGGAAGAATACAAAGAGCGGCACGCGGAAGGTTTTTACAGTTACACTCACTTCTGCCGTCAGTACAAGGCATGGCTTAA
ATGCCAAAAACCCTCGATGCGACAAAACCATAAAGCTGGTGAAAAACTGTTTGTGGATTACTGTGGCCCAACCATGAGTATTGTTGATAGAAGTACAGGC
GAATGCCGTACTGCACAAGTATTCGTCGCGGTCATGGGGGCATCAAATTATACCTATGCCGAAGCGACTTACAGCCAGAAACTTGAAGATTGGGTGATGA
GTCATGCCCGTTGTTTTGAGTTTCTTGGTGGTGTTCCTGAGCAGATCATTCCTGACAACCTTAAAAGTGCCGTCACCAAACCCTGCCGATATGAGCCTGA
CTTAAACCCAACCTACCAACAACTAGCGACGCATTACGATACCGTCATTGTGCCTGCAAGACCCTATAAACCAAAGGATAAAGCCAAGGCTGAAGTGGGT
GTACAAATTGTTGAACGTTGGATCATGGCACGTCTTCGTAATGAAACCTTTTTTAGCTTGCGTCAATTAAATCTAAAGATTCAAGAATTACTCATCGATT
TAAATCAGCGACAAATGAAAAAACATCCTGGCTCACGATTAAGTCAATTTGAAGCCATTGATAAACCAGCGTTAAAACCATTGCCCTTGCAGCCTTACAG
CTACACCTTAGTGAAACAAGTGAGAGTACATATTGATTATCATATTGAGATTGAAAAGCACTATTACTCAGTGCCACATACCTTGATCAAGCAAAAACTT
GAAGCACATGCCTCAGGAAAATTGGTGACACTCTACCATCAAGGCATACGAGTCGCTGTTCACCCCAGATCATACCGAGAAGGTGCGCATACAACACTTG
AGCTACATATGCCTATCGCTCACCAAAAACAACAGCAATGGACACCGCAGCGATTTGAGCGCTGGGCAAGTCAGTTTGGTAAATCAACCGAGCAGTTTGT
TATGCAATTGATGCAAGCTAAAAAGCATCCAGAGCAAAGCTACCGTGCTTGTATGGGGTTATTAAGCCTAGGCAAGAAGTTTACAGACCAACGTCTTGAA
GCCGCCTGTCATCGCGCATTAGCCACAGGTGTTACTCGCGTAAAACAAGTGAAAACCATCTTAGAAAAAGGCTTGGATAAGCAACCCTTGCCACAAGCTC
AGGGTGATTCGCTACAAGATATTGATCATAAAAATATCCGCGGCAATAACTATTACCATTAATAAAAACTAACCAATCAAAGGAAATCTTATGAAAAATA
TCAATCAACAAGTCAATAACCAGTTAAGTAACTTAAAGCTAAGCGGCATACGTGATGCGCTATTACAGCAACTTGAACAACCTAATCTATACGTAGAACA
AAGCTTCGAAGAGCGGCTAAGTTTATTGCTTGAGCATGAAATAACGCAGCGTGACCAGCGTAAAATTGACCGCCTAACTCGACAAGCAAAGTTCAGAGTT
GGCGGCACGCTTGCTCAACTCAACTATGGCGCAGCACGACAACTCGATAAAACTCAGATCCGTTCATTAGCACAAGGTGAATGGCTTCGCCTTCACCAAA
ATATTTTGATTACGGGAGCAACGGGGTGTGGCAAAACTTACCTCGCTTGCGCTCTTGGTCAAAACCACTGCCAACAAGGGAGTAGCGTTTATTATTTTAG
GCTCAAGGAGCTATTAGAAAAGATGTTCTTAGCGCAAGCCGATGGTAGTTATCGAAAACTGATCAACAAGCTTAGCTCTGCTAATTTACTGATCTTAGAT
GATTGGGGATTAGAGCCATTAACGGCTCAACAACGTAGTGATTTATTGGAATTAATTGATGCAAGATATGATACAAAATCGACATTAATTGCCAGTCAAT
TACCGATCGAAAATTGGTATGAAATGATAGGAGAATCGACACATGCTGATGCGATTCTAGATCGACTTGTTCACGGAGCAATAAAGTTGGAATTAAAAGG
CGAATCGATGCGAAAAAAACTAAATACCTTGACTGAAGCCGATCACTGAAGCTAGATTTTACGGAGGTCTACTGGCGAACAAAAAAGTGATCGGCTTGAA
TGGTATTGACCGATCGGCATCATGGTATTACGCA
GGTCAAAATAGTATTGAGTGATCGGCTTGAATAGTACCGTTCGTTTTTTGTACTTTTTTGTCTGCCCGTAGGTGTTTTTAACCGTTATTCTTTTCATTTT
TGATGATGAGAATGACCATGCCAACGGCACCTATTTCAATGCGTAAACTCAAAGAAATTTTAAGACTAAAATACGGCTGTAAACTCAGTCATCGTCAGAT
AGCAAAAAGCTTATCTGTTTCACCCTCAATCGTGTCTAAATATGCCTGTAAATCAGCAGAGCTAGACATTACTTGCTGGCCGCTTGATGAGAAGTGGGAT
GATAACTCTCTACAACAAGCGTTTTTCAAAACAAAGCCTCGTTTAAAAGGCTTTACCATTCCTGACTGGTCGTTAGTTCAACAAGAGCTTCGGCCTAAAA
CCATGACGTTGTTGCTGCTTTGGGAAGAATACAAAGAGCGGCACGCGGAAGGTTTTTACAGTTACACTCACTTCTGCCGTCAGTACAAGGCATGGCTTAA
ATGCCAAAAACCCTCGATGCGACAAAACCATAAAGCTGGTGAAAAACTGTTTGTGGATTACTGTGGCCCAACCATGAGTATTGTTGATAGAAGTACAGGC
GAATGCCGTACTGCACAAGTATTCGTCGCGGTCATGGGGGCATCAAATTATACCTATGCCGAAGCGACTTACAGCCAGAAACTTGAAGATTGGGTGATGA
GTCATGCCCGTTGTTTTGAGTTTCTTGGTGGTGTTCCTGAGCAGATCATTCCTGACAACCTTAAAAGTGCCGTCACCAAACCCTGCCGATATGAGCCTGA
CTTAAACCCAACCTACCAACAACTAGCGACGCATTACGATACCGTCATTGTGCCTGCAAGACCCTATAAACCAAAGGATAAAGCCAAGGCTGAAGTGGGT
GTACAAATTGTTGAACGTTGGATCATGGCACGTCTTCGTAATGAAACCTTTTTTAGCTTGCGTCAATTAAATCTAAAGATTCAAGAATTACTCATCGATT
TAAATCAGCGACAAATGAAAAAACATCCTGGCTCACGATTAAGTCAATTTGAAGCCATTGATAAACCAGCGTTAAAACCATTGCCCTTGCAGCCTTACAG
CTACACCTTAGTGAAACAAGTGAGAGTACATATTGATTATCATATTGAGATTGAAAAGCACTATTACTCAGTGCCACATACCTTGATCAAGCAAAAACTT
GAAGCACATGCCTCAGGAAAATTGGTGACACTCTACCATCAAGGCATACGAGTCGCTGTTCACCCCAGATCATACCGAGAAGGTGCGCATACAACACTTG
AGCTACATATGCCTATCGCTCACCAAAAACAACAGCAATGGACACCGCAGCGATTTGAGCGCTGGGCAAGTCAGTTTGGTAAATCAACCGAGCAGTTTGT
TATGCAATTGATGCAAGCTAAAAAGCATCCAGAGCAAAGCTACCGTGCTTGTATGGGGTTATTAAGCCTAGGCAAGAAGTTTACAGACCAACGTCTTGAA
GCCGCCTGTCATCGCGCATTAGCCACAGGTGTTACTCGCGTAAAACAAGTGAAAACCATCTTAGAAAAAGGCTTGGATAAGCAACCCTTGCCACAAGCTC
AGGGTGATTCGCTACAAGATATTGATCATAAAAATATCCGCGGCAATAACTATTACCATTAATAAAAACTAACCAATCAAAGGAAATCTTATGAAAAATA
TCAATCAACAAGTCAATAACCAGTTAAGTAACTTAAAGCTAAGCGGCATACGTGATGCGCTATTACAGCAACTTGAACAACCTAATCTATACGTAGAACA
AAGCTTCGAAGAGCGGCTAAGTTTATTGCTTGAGCATGAAATAACGCAGCGTGACCAGCGTAAAATTGACCGCCTAACTCGACAAGCAAAGTTCAGAGTT
GGCGGCACGCTTGCTCAACTCAACTATGGCGCAGCACGACAACTCGATAAAACTCAGATCCGTTCATTAGCACAAGGTGAATGGCTTCGCCTTCACCAAA
ATATTTTGATTACGGGAGCAACGGGGTGTGGCAAAACTTACCTCGCTTGCGCTCTTGGTCAAAACCACTGCCAACAAGGGAGTAGCGTTTATTATTTTAG
GCTCAAGGAGCTATTAGAAAAGATGTTCTTAGCGCAAGCCGATGGTAGTTATCGAAAACTGATCAACAAGCTTAGCTCTGCTAATTTACTGATCTTAGAT
GATTGGGGATTAGAGCCATTAACGGCTCAACAACGTAGTGATTTATTGGAATTAATTGATGCAAGATATGATACAAAATCGACATTAATTGCCAGTCAAT
TACCGATCGAAAATTGGTATGAAATGATAGGAGAATCGACACATGCTGATGCGATTCTAGATCGACTTGTTCACGGAGCAATAAAGTTGGAATTAAAAGG
CGAATCGATGCGAAAAAAACTAAATACCTTGACTGAAGCCGATCACTGAAGCTAGATTTTACGGAGGTCTACTGGCGAACAAAAAAGTGATCGGCTTGAA
TGGTATTGACCGATCGGCATCATGGTATTACGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1545 bp | 514 aa | 218 | 1762 | + | No |
Chemistry : DDE
ORF sequence :
MPTAPISMRKLKEILRLKYGCKLSHRQIAKSLSVSPSIVSKYACKSAELDITCWPLDEKWDDNSLQQAFFKTKPRLKGFTIPDWSLVQQELRPKTMTLLL
LWEEYKERHAEGFYSYTHFCRQYKAWLKCQKPSMRQNHKAGEKLFVDYCGPTMSIVDRSTGECRTAQVFVAVMGASNYTYAEATYSQKLEDWVMSHARCF
EFLGGVPEQIIPDNLKSAVTKPCRYEPDLNPTYQQLATHYDTVIVPARPYKPKDKAKAEVGVQIVERWIMARLRNETFFSLRQLNLKIQELLIDLNQRQM
KKHPGSRLSQFEAIDKPALKPLPLQPYSYTLVKQVRVHIDYHIEIEKHYYSVPHTLIKQKLEAHASGKLVTLYHQGIRVAVHPRSYREGAHTTLELHMPI
AHQKQQQWTPQRFERWASQFGKSTEQFVMQLMQAKKHPEQSYRACMGLLSLGKKFTDQRLEAACHRALATGVTRVKQVKTILEKGLDKQPLPQAQGDSLQ
DIDHKNIRGNNYYH
LWEEYKERHAEGFYSYTHFCRQYKAWLKCQKPSMRQNHKAGEKLFVDYCGPTMSIVDRSTGECRTAQVFVAVMGASNYTYAEATYSQKLEDWVMSHARCF
EFLGGVPEQIIPDNLKSAVTKPCRYEPDLNPTYQQLATHYDTVIVPARPYKPKDKAKAEVGVQIVERWIMARLRNETFFSLRQLNLKIQELLIDLNQRQM
KKHPGSRLSQFEAIDKPALKPLPLQPYSYTLVKQVRVHIDYHIEIEKHYYSVPHTLIKQKLEAHASGKLVTLYHQGIRVAVHPRSYREGAHTTLELHMPI
AHQKQQQWTPQRFERWASQFGKSTEQFVMQLMQAKKHPEQSYRACMGLLSLGKKFTDQRLEAACHRALATGVTRVKQVKTILEKGLDKQPLPQAQGDSLQ
DIDHKNIRGNNYYH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
759 bp | 252 aa | 1791 | 2549 | + | No |
AG : IS21 helper
ORF sequence :
MKNINQQVNNQLSNLKLSGIRDALLQQLEQPNLYVEQSFEERLSLLLEHEITQRDQRKIDRLTRQAKFRVGGTLAQLNYGAARQLDKTQIRSLAQGEWLR
LHQNILITGATGCGKTYLACALGQNHCQQGSSVYYFRLKELLEKMFLAQADGSYRKLINKLSSANLLILDDWGLEPLTAQQRSDLLELIDARYDTKSTLI
ASQLPIENWYEMIGESTHADAILDRLVHGAIKLELKGESMRKKLNTLTEADH
LHQNILITGATGCGKTYLACALGQNHCQQGSSVYYFRLKELLEKMFLAQADGSYRKLINKLSSANLLILDDWGLEPLTAQQRSDLLELIDARYDTKSTLI
ASQLPIENWYEMIGESTHADAILDRLVHGAIKLELKGESMRKKLNTLTEADH
Blast result :
Comments
Three copies of ISShfr5 are encoded in the Shewanella frigidimarina chromosome. ISShfr5 transposase OrfA and OrfB have 60% identity with ISEc12 OrfA and OrfB, respectively.
References
1] Romine, M. F. (2008) Direct submission.