ISShfr3

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008345 ND Shewanella frigidimarina
Shewanella frigidimarina NCBM4000
DNA section
IS Length : 1521 bp

Ends


IR Length : 13/14

IRL : TGGCCAAGGATGATGAGATGGACGCTCCCTAATGCGCCAAACTGATGTTG
IRR : ---------GGCCATATATGGACGCTCCCGGTGAGTCAAGATAATACTCT

Insertion site


Left flankDirect repeatRight flankDR Length
AAATTACGTGAGCTAGCTTTCGA3
CTAGCTTTCGTTATCGGAAGCG0
ATAGCGTGAGCCGCTAGCTTTC0

DNA sequence

TGGCCAAGGATGATGAGATGGACGCTCCCTAATGCGCCAAACTGATGTTGAACCACACAGTTACTTAAGGAGCGTCCACCATGAAAGTTACCACTATTTC
GATTGATTTGGCCAAGAATGTATTTCAAGTCCTTGGGATGGATTGTCATGCAAAACAAGTCTTCAATAAGCGTTTAAATCGCACTCAACTGACCGAATTT
ATGCTGCAACAACCCAATTGCGATGTGGTCTTCGAGGCTTGTTATTCATCCCATTACTGGGGGCGTAAGTTTCTCGCTATGGGGCATAACGTTAAGCTCA
TTCCTGCCCAACATGTCACCCCGTTCGTGCGAGGCAGTAAAAATGATAACAATGACACTATGGCGATTTATGAAGCCAGCTTTAGGCCTAACATTCGTTT
CGTGCCAGTGAAAACCGAAGAGCAGCAAGAGATATTGATGTTGCACCGTATCAGGGAGCGATTAGTAAAGGAGAAAACCGCCTGTACTAACCAAATTAGA
GGTGTCTTAGTTGATTTTGGCATTTGTTTTGCCCAAGGCTATAAAGCGTTTGAAGTGGCCATTTGGGACATCATTAATGATGCATCACAACGTCCCATAA
TCAAGCTGATGGCAAATGACTTCTGGGGTGAATATCAAAGTGTAAATACACGTTTAGACAGAATTAATACCTTGATAAAAAAGCTTATTGAGCGTGACCC
TAATGGCAAAATATTACTGAGTATTCCAGGTGTCGGCCCCATCATCGCTTCAGCATTTGTCGCATCAATTGGCCGAGGCCAGGCTTTTAATACCGCTAAA
GAGTTGGGTGTGTGGCTGGGGTTAACTCCTAAACAATTTGCCTCTGGCCATAGAAGTGTTAATGGCAGTATTACCAAACGAGGCAATGGCTATTTACGCA
AGCAACTTATTCATGGTGCCAGAGCAGTCGTCAGCCACGCTAGTAAAAAACAAGATGATTTAAACCTTTGGATAATGCAGTTAAGAAGCCGAAAAAGCAT
CTGCAGTACGGTGGTTGCCACCGCCCATAGACTCGCCAGACTAATATGGATTTTATTACAAAAACAAGTGCCTTATGTTCCGCAATATGCTGCAAATCAA
GGTGTAAACCATGGTACTTGTTAACACTGTTGTCGCTATCTTGCTGAGCTCGGGCTGGCCAAGGGTAATAAACCCGACTGGATGATAATAGCCGCAAGAT
AGCACATTAAACACTCACCAAGGTTGTTGTTAACGATGAATAAATGGCTCAGTCCAACCAGTGCTAGCCTGAATAGGCCAAGGATAGTGTAAACCTAATC
CGCATGGATGTTTCAATTGATAGGCGCAGTGGTACGGATTTCATTAGGGGCGCAGCTTGACTGTTAAGCCCGTATATATGGCAGTTCAACCGCTTCTAGC
GGTAAATGAGCCGCATCAAAAACAATGACAAGTGTGAAGCAATAGAATAGAAAACTAAGGCCAAAAAGCTTTGGGTAAGCAGAGTATTATCTTGACTCAC
CGGGAGCGTCCATATATGGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa811124+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKVTTISIDLAKNVFQVLGMDCHAKQVFNKRLNRTQLTEFMLQQPNCDVVFEACYSSHYWGRKFLAMGHNVKLIPAQHVTPFVRGSKNDNNDTMAIYEAS
FRPNIRFVPVKTEEQQEILMLHRIRERLVKEKTACTNQIRGVLVDFGICFAQGYKAFEVAIWDIINDASQRPIIKLMANDFWGEYQSVNTRLDRINTLIK
KLIERDPNGKILLSIPGVGPIIASAFVASIGRGQAFNTAKELGVWLGLTPKQFASGHRSVNGSITKRGNGYLRKQLIHGARAVVSHASKKQDDLNLWIMQ
LRSRKSICSTVVATAHRLARLIWILLQKQVPYVPQYAANQGVNHGTC

 

Blast result :
Comments
There are 3 copies of ISShfr3 encoded in the S. frigidimarina chromosome. The terminal inverted repeats begin at 16 bp from the left end and 7 bp from the right end. The ISShfr3 transposase has 42% identity to that encoded by ISShes7
References
1] Romine, M. F. (2008) Direct submission.