ISShfr3
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008345 | ND | Shewanella frigidimarina | Shewanella frigidimarina NCBM4000 |
DNA section
IS Length : 1521 bp
Ends
IR Length : 13/14
IRL : TGGCCAAGGATGATGAGATGGACGCTCCCTAATGCGCCAAACTGATGTTG
IRR : ---------GGCCATATATGGACGCTCCCGGTGAGTCAAGATAATACTCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAATTACGTG | AGC | TAGCTTTCGA | 3 |
CTAGCTTTCGT | TATCGGAAGCG | 0 | |
ATAGCGTGAGC | CGCTAGCTTTC | 0 |
DNA sequence
TGGCCAAGGATGATGAGATGGACGCTCCCTAATGCGCCAAACTGATGTTGAACCACACAGTTACTTAAGGAGCGTCCACCATGAAAGTTACCACTATTTC
GATTGATTTGGCCAAGAATGTATTTCAAGTCCTTGGGATGGATTGTCATGCAAAACAAGTCTTCAATAAGCGTTTAAATCGCACTCAACTGACCGAATTT
ATGCTGCAACAACCCAATTGCGATGTGGTCTTCGAGGCTTGTTATTCATCCCATTACTGGGGGCGTAAGTTTCTCGCTATGGGGCATAACGTTAAGCTCA
TTCCTGCCCAACATGTCACCCCGTTCGTGCGAGGCAGTAAAAATGATAACAATGACACTATGGCGATTTATGAAGCCAGCTTTAGGCCTAACATTCGTTT
CGTGCCAGTGAAAACCGAAGAGCAGCAAGAGATATTGATGTTGCACCGTATCAGGGAGCGATTAGTAAAGGAGAAAACCGCCTGTACTAACCAAATTAGA
GGTGTCTTAGTTGATTTTGGCATTTGTTTTGCCCAAGGCTATAAAGCGTTTGAAGTGGCCATTTGGGACATCATTAATGATGCATCACAACGTCCCATAA
TCAAGCTGATGGCAAATGACTTCTGGGGTGAATATCAAAGTGTAAATACACGTTTAGACAGAATTAATACCTTGATAAAAAAGCTTATTGAGCGTGACCC
TAATGGCAAAATATTACTGAGTATTCCAGGTGTCGGCCCCATCATCGCTTCAGCATTTGTCGCATCAATTGGCCGAGGCCAGGCTTTTAATACCGCTAAA
GAGTTGGGTGTGTGGCTGGGGTTAACTCCTAAACAATTTGCCTCTGGCCATAGAAGTGTTAATGGCAGTATTACCAAACGAGGCAATGGCTATTTACGCA
AGCAACTTATTCATGGTGCCAGAGCAGTCGTCAGCCACGCTAGTAAAAAACAAGATGATTTAAACCTTTGGATAATGCAGTTAAGAAGCCGAAAAAGCAT
CTGCAGTACGGTGGTTGCCACCGCCCATAGACTCGCCAGACTAATATGGATTTTATTACAAAAACAAGTGCCTTATGTTCCGCAATATGCTGCAAATCAA
GGTGTAAACCATGGTACTTGTTAACACTGTTGTCGCTATCTTGCTGAGCTCGGGCTGGCCAAGGGTAATAAACCCGACTGGATGATAATAGCCGCAAGAT
AGCACATTAAACACTCACCAAGGTTGTTGTTAACGATGAATAAATGGCTCAGTCCAACCAGTGCTAGCCTGAATAGGCCAAGGATAGTGTAAACCTAATC
CGCATGGATGTTTCAATTGATAGGCGCAGTGGTACGGATTTCATTAGGGGCGCAGCTTGACTGTTAAGCCCGTATATATGGCAGTTCAACCGCTTCTAGC
GGTAAATGAGCCGCATCAAAAACAATGACAAGTGTGAAGCAATAGAATAGAAAACTAAGGCCAAAAAGCTTTGGGTAAGCAGAGTATTATCTTGACTCAC
CGGGAGCGTCCATATATGGCC
GATTGATTTGGCCAAGAATGTATTTCAAGTCCTTGGGATGGATTGTCATGCAAAACAAGTCTTCAATAAGCGTTTAAATCGCACTCAACTGACCGAATTT
ATGCTGCAACAACCCAATTGCGATGTGGTCTTCGAGGCTTGTTATTCATCCCATTACTGGGGGCGTAAGTTTCTCGCTATGGGGCATAACGTTAAGCTCA
TTCCTGCCCAACATGTCACCCCGTTCGTGCGAGGCAGTAAAAATGATAACAATGACACTATGGCGATTTATGAAGCCAGCTTTAGGCCTAACATTCGTTT
CGTGCCAGTGAAAACCGAAGAGCAGCAAGAGATATTGATGTTGCACCGTATCAGGGAGCGATTAGTAAAGGAGAAAACCGCCTGTACTAACCAAATTAGA
GGTGTCTTAGTTGATTTTGGCATTTGTTTTGCCCAAGGCTATAAAGCGTTTGAAGTGGCCATTTGGGACATCATTAATGATGCATCACAACGTCCCATAA
TCAAGCTGATGGCAAATGACTTCTGGGGTGAATATCAAAGTGTAAATACACGTTTAGACAGAATTAATACCTTGATAAAAAAGCTTATTGAGCGTGACCC
TAATGGCAAAATATTACTGAGTATTCCAGGTGTCGGCCCCATCATCGCTTCAGCATTTGTCGCATCAATTGGCCGAGGCCAGGCTTTTAATACCGCTAAA
GAGTTGGGTGTGTGGCTGGGGTTAACTCCTAAACAATTTGCCTCTGGCCATAGAAGTGTTAATGGCAGTATTACCAAACGAGGCAATGGCTATTTACGCA
AGCAACTTATTCATGGTGCCAGAGCAGTCGTCAGCCACGCTAGTAAAAAACAAGATGATTTAAACCTTTGGATAATGCAGTTAAGAAGCCGAAAAAGCAT
CTGCAGTACGGTGGTTGCCACCGCCCATAGACTCGCCAGACTAATATGGATTTTATTACAAAAACAAGTGCCTTATGTTCCGCAATATGCTGCAAATCAA
GGTGTAAACCATGGTACTTGTTAACACTGTTGTCGCTATCTTGCTGAGCTCGGGCTGGCCAAGGGTAATAAACCCGACTGGATGATAATAGCCGCAAGAT
AGCACATTAAACACTCACCAAGGTTGTTGTTAACGATGAATAAATGGCTCAGTCCAACCAGTGCTAGCCTGAATAGGCCAAGGATAGTGTAAACCTAATC
CGCATGGATGTTTCAATTGATAGGCGCAGTGGTACGGATTTCATTAGGGGCGCAGCTTGACTGTTAAGCCCGTATATATGGCAGTTCAACCGCTTCTAGC
GGTAAATGAGCCGCATCAAAAACAATGACAAGTGTGAAGCAATAGAATAGAAAACTAAGGCCAAAAAGCTTTGGGTAAGCAGAGTATTATCTTGACTCAC
CGGGAGCGTCCATATATGGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1044 bp | 347 aa | 81 | 1124 | + | No |
Chemistry : DEDD
ORF sequence :
MKVTTISIDLAKNVFQVLGMDCHAKQVFNKRLNRTQLTEFMLQQPNCDVVFEACYSSHYWGRKFLAMGHNVKLIPAQHVTPFVRGSKNDNNDTMAIYEAS
FRPNIRFVPVKTEEQQEILMLHRIRERLVKEKTACTNQIRGVLVDFGICFAQGYKAFEVAIWDIINDASQRPIIKLMANDFWGEYQSVNTRLDRINTLIK
KLIERDPNGKILLSIPGVGPIIASAFVASIGRGQAFNTAKELGVWLGLTPKQFASGHRSVNGSITKRGNGYLRKQLIHGARAVVSHASKKQDDLNLWIMQ
LRSRKSICSTVVATAHRLARLIWILLQKQVPYVPQYAANQGVNHGTC
FRPNIRFVPVKTEEQQEILMLHRIRERLVKEKTACTNQIRGVLVDFGICFAQGYKAFEVAIWDIINDASQRPIIKLMANDFWGEYQSVNTRLDRINTLIK
KLIERDPNGKILLSIPGVGPIIASAFVASIGRGQAFNTAKELGVWLGLTPKQFASGHRSVNGSITKRGNGYLRKQLIHGARAVVSHASKKQDDLNLWIMQ
LRSRKSICSTVVATAHRLARLIWILLQKQVPYVPQYAANQGVNHGTC
Blast result :
Comments
There are 3 copies of ISShfr3 encoded in the S. frigidimarina chromosome. The terminal inverted repeats begin at 16 bp from the left end and 7 bp from the right end. The ISShfr3 transposase has 42% identity to that encoded by ISShes7
References
1] Romine, M. F. (2008) Direct submission.