ISMno3

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_011892 ND Methylobacterium nodulans
Methylobacterium nodulans ORS 2060 plasmid pMNOD01
DNA section
IS Length : 1364 bp

Ends


IR Length : 22/28

IRL : GTAATTACCCACGCCGCTTGCGCGGGGTGGATTTCGCTGCTTCCCTCGTG
IRR : GTATTTACCCACGCCCGTGACAGCGGGGGTTAGGCGCCGAGAGTCTTGAG

Insertion site


Left flankDirect repeatRight flankDR Length
GATCACAGCTGCTGATCGTTTCCCGTTC8

DNA sequence

GTAATTACCCACGCCGCTTGCGCGGGGTGGATTTCGCTGCTTCCCTCGTGGGATGGGCCGCCGCGAGCTTGAGCGCCTGAGCAAGGCGGAGCTGATCGAG
CTGGTGCTGCGGCTGCAGCGCCCAGACAAGACCTCGCGCACCTCCTCCACGCCGCCCTCGACCGATCGCAAGGAGCGGCGCGAGCAGGCCAAACCTGGCG
GCGCCAAGCCGGGTCACGAGGGGCACAGTCGGGTGAGCAGCCAGATCCCGGATGAGGTGGTCGCGCATCGCCCGGGTCACTGCTCCTGCGGTGGAGGCGT
GTTGGCTCCGGACCTTCCGGCCGAGATCGTCAGCTTGTCCGAGCGGATCGAGCTGCCCGAGGTCGCGCCAGTCGTCACCCAACACCAGCAACTGGCCGTG
CGCTGTCTCGCCTGTGGTGCACGGGTCCTCGCTCCGGTGCCGCAGGCCGCGCGCGGCACCCCGTTTGGCCCGCGCCTGCACGCGGTGGCTGTCTACCTGA
AGACCTTCCAGGCGCTGTCCTACGAGCGGCTACAGGCCCTGTTGGCGGACCTGTTCGGGCTGACGCTCAGCCAGGGCGGCCTGATGAATCTGCTCCGCCG
CGCGCAAGGGCGGTTCCGGCCCGGCCGCGCGGCGGCCGTGTCGGCGCTGCGCCGGGCTGCGGTCGTCGCCTCAGACGAGACTGGCGTGCGCATCGAGGGC
ACGAACAGCTACCATTGGGGCTTCCACTCGGCTGATGCGGTGGTCCATCACGCCGCCCCGACGCGGGTGGCCTGCGTCATCCGAGAGATGATGGACGGGC
ACCGGCCCGCGGTGTGGCTGTCGGACCGCTCCACGGCGCAGCAAGGCCATGGCGTGCGCCACCCAACCTGCCTGGCGCATCTGGTGCGCGACATCGCTTA
TGCGGTCGAGGCCAGCGAGGATCCCGTGCCGCTGCGCCTGCAGCTGTGGCTGGGATCCGTGTTCAGCTTGGCGGAGCGCGTCACGGATCTCGCCGCTTCA
ACCTTGGCGGCCAAGCGCCGGACGCTGGAGCGGCGGCTGGCCGAGATCCTGGCCGTCCCAAGCCGCTGCGACCTGACGCGAGCCTTGCAGGCCAAGATCG
GCCGTGCGCGCGACCAGCTTCTGGTCTTCCTCGCCCATCCCGGCCAGGTCGCGGTCACAAACAACGGCTGTAAGCGGGCCCTGCGCCCGGCGGTGGTGCA
GCGGAAGGTGACGAACGGCTATCGGGCGATGTGGGCGGCCGAAGGCGAGGCCGACGTGCGCACGGTCGTCGACACAGCCCGTCTGTCGGGTGCTGGCACC
TTTTCGGCACGATCCTCAAGACTCTCGGCGCCTAACCCCCGCTGTCACGGGCGTGGGTAAATAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1308 bp435 aa531360+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGRRELERLSKAELIELVLRLQRPDKTSRTSSTPPSTDRKERREQAKPGGAKPGHEGHSRVSSQIPDEVVAHRPGHCSCGGGVLAPDLPAEIVSLSERIE
LPEVAPVVTQHQQLAVRCLACGARVLAPVPQAARGTPFGPRLHAVAVYLKTFQALSYERLQALLADLFGLTLSQGGLMNLLRRAQGRFRPGRAAAVSALR
RAAVVASDETGVRIEGTNSYHWGFHSADAVVHHAAPTRVACVIREMMDGHRPAVWLSDRSTAQQGHGVRHPTCLAHLVRDIAYAVEASEDPVPLRLQLWL
GSVFSLAERVTDLAASTLAAKRRTLERRLAEILAVPSRCDLTRALQAKIGRARDQLLVFLAHPGQVAVTNNGCKRALRPAVVQRKVTNGYRAMWAAEGEA
DVRTVVDTARLSGAGTFSARSSRLSAPNPRCHGRG

 

Blast result :
Comments
ISMno3 is 90% aa similar to ISMno2.
References
1] ISfinder annotation (2008).
2] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Pitluck,S., Larimer,F., Land,M.L., Hauser,L., Marx,C.J. and Richardson,P. (2007) Direct Submission GenBank.