ISVch3
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
EU272902 | ND | Vibrio cholerae | Vibrio cholerae Amazonia 3509 |
DNA section
IS Length : 2593 bp
Ends
IR Length : 40/49
IRL : TGCATATTTCGGAGCATTCCGATCAGTCATTTCGGTATTATCCGATCACC
IRR : TGCGTATTTCGGTGATTGCGATCGCTCGTTTCGGTTTATTCCGATCACCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AACGTATTAC | AGCGGC | TGAACTTGAT | 6 |
DNA sequence
TGCATATTTCGGAGCATTCCGATCAGTCATTTCGGTATTATCCGATCACCCATTTCGGTTTAAACCGATCACTGATTCCGCGATTATCCGATCACTTTTA
GCCTAACTCCGAAATCGGTGATCGGAATAGCGAAAACCGCGATCGGAATGCCCGAAATCCTTCCTTTTTCTCTTTTAAATCAATCACTCGCTATTCTTTA
CTTCTTAAACAAGAACGTAAGGAAGCGACCATGGCTAAAAAGAGAACTCCAATGAACAAAATTAAAGAGGTATTACGCCTGAAGTACGACTGCGGTCTCT
CAAATCGCAGCATCGCTTCTTGCCTTAAACTCGGGCCGTCCACCATCTCGGAACTCCTCACTCGCTTTAAACAAAGCCAACTTGGCTGGCCTCTACCCGA
AGGTTGCAGTGACACAGAACTCACTCAGGTGTTGTATCACGGCAAGAAAGCCTGTCGCGATAAGGTGATGCCAGACTTTACGCAATACGCTGTCGAACTC
AGACGCAAAGGCATGACGAAGATGCTGCTCTGGCAGGAATATCATGAGCAATATCAAGAGCAGGCCTACGCTTACACTCAGTTCTGTGAACACTTCACTC
GTTGGTTCAAAACCCAAAAGCGCAGTATGCGTCAGCTCCATGTGGCAGGTGATAAGCTGTTTATCGATTACTGTGGGCCTCGGCTTCAGGTAGTCAATCC
TGACACAGGCGAAGTGCGCGAAGCAGAAGTGTTCGTAGCAAGCTTAGGCGCGTCCAACTACACCTATGTGGAAGCCTTCCCCAGCCAAGGGAAGTCTTAC
TGGTTAGAGGCGCATGCCAATGCCTTCGAGCACTTCGGTGGCGTCCCCCATCTCTTGGTCCCCGATAATCTACGCAGCGCGGTCACCAAAGCGAATCGTT
ATGAGCCGAGACTGAACGACAGCTATCAGAAACTGGCGAATCACTATCAAACCGCCGTAATGCCAGCTCGCCCCTACAAACCGAAAGACAAAGCCAAGGC
AGAGAATGCCGTCCTCCTAGTGGAACGTTGGATCATGATGCGACTTCGCCATCAAACCTTCCATACCTTCAAAGAGCTGAACCTCGCCATCCGTGAGCTT
ATGAATGACTTAAACGAACGTGAGATGAAGCAGTATGGTGCGAGCCGCAAAGCACTGTTCGACAAACTCGATAAACCCGCGTTAAAGCCCCTTCCTAAAC
AGCGATATCTCTATACCGAAACCAAGCGAGCCAAAGTTGGGCCTGATTATCACATCGAATATCGCCGTCACTACTACTCGGTTCCCCATCAACTGGTTGG
CCACCATGTCGAGCTGGAAGGCTCCAACCGTCTGGTGCAGATCTACCACCAAGGTAACTTGATCGCTCAACATCCACGCAGCCAAAGGGAACGTGGAAAC
AGCACTCAACCAGAGCACATGCCGAGTAACCATCAACATCAAAAGTGGTCGCCTGGACGCTTGCTCAACTGGGGAGCCAATATCGGCCCAGCCACACGAG
AGGTCGTCAATAAGATGCTGAACGCCAAACCTCATCCAGAGCAGGCCTATCGTTCCTGTCTTGGGCTGCTCAATCTGAGTAAAACCTATGGCGAGTCGCG
CCTCGAGCAAGCCTGTAAAGATGCATTGATGCTGACAAAACCCAATTACACCTTCGTCAACAATCTACTCAAGAACAATCGTGAAGGACAACTGAGTAAA
GATAAAGCGAATACGCCGAACCTTGTTCACAGCAATGTTCGTGGCCCGAACTGTTATCACTAGGAGAAAGGATATGAACGCACTGAATGACCAACTCAAA
ACCCTGCGCTTAAGTCATGCGGCGAAAGCGTTAGAGCAGCAACAAGAGCAACTGACCACCTACGCAGAGCTGGACTTCGAGGAGAGGTTAAGCCTACTTC
TGGAAAGTGAAATCTTGAATCGCAATCAAACCAAAATCCAACGCCTGAAACGACAAGCCAAGCTAAGAGTGGATGCTCAGCCGAGCCAACTTATTTACAA
GGAGGGACGAAACCTCAACCGCAAGCAGATGAGCGAACTGCTAACGGGTGGCTATCTGCACAAGCACCAGAACATCTTGATCACAGGCCCAACAGGCGCA
GGTAAAACGTATCTTGGTTGCGCACTGGCAACCAGCGCCTGCGACCAACAGCAAACGGTCAGATACTACCGATTAACTCGCTTGCTCGATGACCTGACCG
CAGGTCGTCTAGATGGTAGTTATCAAAAGCAACTTCAATCGTTGGCTAAGAAAGCTCTACTGATCCTCGACGACTGGGGGATGGAGAAACTGACTCAAGA
ACATGCAGGTCACTTGTTAGAAGTGCTTGAAGACCGCTACCAAAACAGCAGCACAATCGTCATCAGTCAACTACCCGTAAAGGAGTGGTACAACATGATC
GGCAACGCCACCGTCGCAGACGCTCTCATGGATAGGCTGGTACACAATAGTCATCGAATAGAACTGGGAGGCGAGTCAATGAGAAAACTGGCGCAATCCG
ATCACTTAGAGTAAAAATAGGAAGAGAGAAAAACGGCAGGATCAGGTGATCGGAATAAACCGAAACGAGCGATCGCAATCACCGAAATACGCA
GCCTAACTCCGAAATCGGTGATCGGAATAGCGAAAACCGCGATCGGAATGCCCGAAATCCTTCCTTTTTCTCTTTTAAATCAATCACTCGCTATTCTTTA
CTTCTTAAACAAGAACGTAAGGAAGCGACCATGGCTAAAAAGAGAACTCCAATGAACAAAATTAAAGAGGTATTACGCCTGAAGTACGACTGCGGTCTCT
CAAATCGCAGCATCGCTTCTTGCCTTAAACTCGGGCCGTCCACCATCTCGGAACTCCTCACTCGCTTTAAACAAAGCCAACTTGGCTGGCCTCTACCCGA
AGGTTGCAGTGACACAGAACTCACTCAGGTGTTGTATCACGGCAAGAAAGCCTGTCGCGATAAGGTGATGCCAGACTTTACGCAATACGCTGTCGAACTC
AGACGCAAAGGCATGACGAAGATGCTGCTCTGGCAGGAATATCATGAGCAATATCAAGAGCAGGCCTACGCTTACACTCAGTTCTGTGAACACTTCACTC
GTTGGTTCAAAACCCAAAAGCGCAGTATGCGTCAGCTCCATGTGGCAGGTGATAAGCTGTTTATCGATTACTGTGGGCCTCGGCTTCAGGTAGTCAATCC
TGACACAGGCGAAGTGCGCGAAGCAGAAGTGTTCGTAGCAAGCTTAGGCGCGTCCAACTACACCTATGTGGAAGCCTTCCCCAGCCAAGGGAAGTCTTAC
TGGTTAGAGGCGCATGCCAATGCCTTCGAGCACTTCGGTGGCGTCCCCCATCTCTTGGTCCCCGATAATCTACGCAGCGCGGTCACCAAAGCGAATCGTT
ATGAGCCGAGACTGAACGACAGCTATCAGAAACTGGCGAATCACTATCAAACCGCCGTAATGCCAGCTCGCCCCTACAAACCGAAAGACAAAGCCAAGGC
AGAGAATGCCGTCCTCCTAGTGGAACGTTGGATCATGATGCGACTTCGCCATCAAACCTTCCATACCTTCAAAGAGCTGAACCTCGCCATCCGTGAGCTT
ATGAATGACTTAAACGAACGTGAGATGAAGCAGTATGGTGCGAGCCGCAAAGCACTGTTCGACAAACTCGATAAACCCGCGTTAAAGCCCCTTCCTAAAC
AGCGATATCTCTATACCGAAACCAAGCGAGCCAAAGTTGGGCCTGATTATCACATCGAATATCGCCGTCACTACTACTCGGTTCCCCATCAACTGGTTGG
CCACCATGTCGAGCTGGAAGGCTCCAACCGTCTGGTGCAGATCTACCACCAAGGTAACTTGATCGCTCAACATCCACGCAGCCAAAGGGAACGTGGAAAC
AGCACTCAACCAGAGCACATGCCGAGTAACCATCAACATCAAAAGTGGTCGCCTGGACGCTTGCTCAACTGGGGAGCCAATATCGGCCCAGCCACACGAG
AGGTCGTCAATAAGATGCTGAACGCCAAACCTCATCCAGAGCAGGCCTATCGTTCCTGTCTTGGGCTGCTCAATCTGAGTAAAACCTATGGCGAGTCGCG
CCTCGAGCAAGCCTGTAAAGATGCATTGATGCTGACAAAACCCAATTACACCTTCGTCAACAATCTACTCAAGAACAATCGTGAAGGACAACTGAGTAAA
GATAAAGCGAATACGCCGAACCTTGTTCACAGCAATGTTCGTGGCCCGAACTGTTATCACTAGGAGAAAGGATATGAACGCACTGAATGACCAACTCAAA
ACCCTGCGCTTAAGTCATGCGGCGAAAGCGTTAGAGCAGCAACAAGAGCAACTGACCACCTACGCAGAGCTGGACTTCGAGGAGAGGTTAAGCCTACTTC
TGGAAAGTGAAATCTTGAATCGCAATCAAACCAAAATCCAACGCCTGAAACGACAAGCCAAGCTAAGAGTGGATGCTCAGCCGAGCCAACTTATTTACAA
GGAGGGACGAAACCTCAACCGCAAGCAGATGAGCGAACTGCTAACGGGTGGCTATCTGCACAAGCACCAGAACATCTTGATCACAGGCCCAACAGGCGCA
GGTAAAACGTATCTTGGTTGCGCACTGGCAACCAGCGCCTGCGACCAACAGCAAACGGTCAGATACTACCGATTAACTCGCTTGCTCGATGACCTGACCG
CAGGTCGTCTAGATGGTAGTTATCAAAAGCAACTTCAATCGTTGGCTAAGAAAGCTCTACTGATCCTCGACGACTGGGGGATGGAGAAACTGACTCAAGA
ACATGCAGGTCACTTGTTAGAAGTGCTTGAAGACCGCTACCAAAACAGCAGCACAATCGTCATCAGTCAACTACCCGTAAAGGAGTGGTACAACATGATC
GGCAACGCCACCGTCGCAGACGCTCTCATGGATAGGCTGGTACACAATAGTCATCGAATAGAACTGGGAGGCGAGTCAATGAGAAAACTGGCGCAATCCG
ATCACTTAGAGTAAAAATAGGAAGAGAGAAAAACGGCAGGATCAGGTGATCGGAATAAACCGAAACGAGCGATCGCAATCACCGAAATACGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1533 bp | 510 aa | 231 | 1763 | + | No |
Chemistry : DDE
ORF sequence :
MAKKRTPMNKIKEVLRLKYDCGLSNRSIASCLKLGPSTISELLTRFKQSQLGWPLPEGCSDTELTQVLYHGKKACRDKVMPDFTQYAVELRRKGMTKMLL
WQEYHEQYQEQAYAYTQFCEHFTRWFKTQKRSMRQLHVAGDKLFIDYCGPRLQVVNPDTGEVREAEVFVASLGASNYTYVEAFPSQGKSYWLEAHANAFE
HFGGVPHLLVPDNLRSAVTKANRYEPRLNDSYQKLANHYQTAVMPARPYKPKDKAKAENAVLLVERWIMMRLRHQTFHTFKELNLAIRELMNDLNEREMK
QYGASRKALFDKLDKPALKPLPKQRYLYTETKRAKVGPDYHIEYRRHYYSVPHQLVGHHVELEGSNRLVQIYHQGNLIAQHPRSQRERGNSTQPEHMPSN
HQHQKWSPGRLLNWGANIGPATREVVNKMLNAKPHPEQAYRSCLGLLNLSKTYGESRLEQACKDALMLTKPNYTFVNNLLKNNREGQLSKDKANTPNLVH
SNVRGPNCYH
WQEYHEQYQEQAYAYTQFCEHFTRWFKTQKRSMRQLHVAGDKLFIDYCGPRLQVVNPDTGEVREAEVFVASLGASNYTYVEAFPSQGKSYWLEAHANAFE
HFGGVPHLLVPDNLRSAVTKANRYEPRLNDSYQKLANHYQTAVMPARPYKPKDKAKAENAVLLVERWIMMRLRHQTFHTFKELNLAIRELMNDLNEREMK
QYGASRKALFDKLDKPALKPLPKQRYLYTETKRAKVGPDYHIEYRRHYYSVPHQLVGHHVELEGSNRLVQIYHQGNLIAQHPRSQRERGNSTQPEHMPSN
HQHQKWSPGRLLNWGANIGPATREVVNKMLNAKPHPEQAYRSCLGLLNLSKTYGESRLEQACKDALMLTKPNYTFVNNLLKNNREGQLSKDKANTPNLVH
SNVRGPNCYH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
780 bp | 259 aa | 1735 | 2514 | + | No |
AG : IS21 helper
ORF sequence :
MFVARTVITRRKDMNALNDQLKTLRLSHAAKALEQQQEQLTTYAELDFEERLSLLLESEILNRNQTKIQRLKRQAKLRVDAQPSQLIYKEGRNLNRKQMS
ELLTGGYLHKHQNILITGPTGAGKTYLGCALATSACDQQQTVRYYRLTRLLDDLTAGRLDGSYQKQLQSLAKKALLILDDWGMEKLTQEHAGHLLEVLED
RYQNSSTIVISQLPVKEWYNMIGNATVADALMDRLVHNSHRIELGGESMRKLAQSDHLE
ELLTGGYLHKHQNILITGPTGAGKTYLGCALATSACDQQQTVRYYRLTRLLDDLTAGRLDGSYQKQLQSLAKKALLILDDWGMEKLTQEHAGHLLEVLED
RYQNSSTIVISQLPVKEWYNMIGNATVADALMDRLVHNSHRIELGGESMRKLAQSDHLE
Blast result :
Comments
ISVch3 is 66% (ORFA) and 67% (ORFB) aa similar to ISSso4.
References