ISVch3

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EU272902 ND Vibrio cholerae
Vibrio cholerae Amazonia 3509
DNA section
IS Length : 2593 bp

Ends


IR Length : 40/49

IRL : TGCATATTTCGGAGCATTCCGATCAGTCATTTCGGTATTATCCGATCACC
IRR : TGCGTATTTCGGTGATTGCGATCGCTCGTTTCGGTTTATTCCGATCACCT

Insertion site


Left flankDirect repeatRight flankDR Length
AACGTATTACAGCGGCTGAACTTGAT6

DNA sequence

TGCATATTTCGGAGCATTCCGATCAGTCATTTCGGTATTATCCGATCACCCATTTCGGTTTAAACCGATCACTGATTCCGCGATTATCCGATCACTTTTA
GCCTAACTCCGAAATCGGTGATCGGAATAGCGAAAACCGCGATCGGAATGCCCGAAATCCTTCCTTTTTCTCTTTTAAATCAATCACTCGCTATTCTTTA
CTTCTTAAACAAGAACGTAAGGAAGCGACCATGGCTAAAAAGAGAACTCCAATGAACAAAATTAAAGAGGTATTACGCCTGAAGTACGACTGCGGTCTCT
CAAATCGCAGCATCGCTTCTTGCCTTAAACTCGGGCCGTCCACCATCTCGGAACTCCTCACTCGCTTTAAACAAAGCCAACTTGGCTGGCCTCTACCCGA
AGGTTGCAGTGACACAGAACTCACTCAGGTGTTGTATCACGGCAAGAAAGCCTGTCGCGATAAGGTGATGCCAGACTTTACGCAATACGCTGTCGAACTC
AGACGCAAAGGCATGACGAAGATGCTGCTCTGGCAGGAATATCATGAGCAATATCAAGAGCAGGCCTACGCTTACACTCAGTTCTGTGAACACTTCACTC
GTTGGTTCAAAACCCAAAAGCGCAGTATGCGTCAGCTCCATGTGGCAGGTGATAAGCTGTTTATCGATTACTGTGGGCCTCGGCTTCAGGTAGTCAATCC
TGACACAGGCGAAGTGCGCGAAGCAGAAGTGTTCGTAGCAAGCTTAGGCGCGTCCAACTACACCTATGTGGAAGCCTTCCCCAGCCAAGGGAAGTCTTAC
TGGTTAGAGGCGCATGCCAATGCCTTCGAGCACTTCGGTGGCGTCCCCCATCTCTTGGTCCCCGATAATCTACGCAGCGCGGTCACCAAAGCGAATCGTT
ATGAGCCGAGACTGAACGACAGCTATCAGAAACTGGCGAATCACTATCAAACCGCCGTAATGCCAGCTCGCCCCTACAAACCGAAAGACAAAGCCAAGGC
AGAGAATGCCGTCCTCCTAGTGGAACGTTGGATCATGATGCGACTTCGCCATCAAACCTTCCATACCTTCAAAGAGCTGAACCTCGCCATCCGTGAGCTT
ATGAATGACTTAAACGAACGTGAGATGAAGCAGTATGGTGCGAGCCGCAAAGCACTGTTCGACAAACTCGATAAACCCGCGTTAAAGCCCCTTCCTAAAC
AGCGATATCTCTATACCGAAACCAAGCGAGCCAAAGTTGGGCCTGATTATCACATCGAATATCGCCGTCACTACTACTCGGTTCCCCATCAACTGGTTGG
CCACCATGTCGAGCTGGAAGGCTCCAACCGTCTGGTGCAGATCTACCACCAAGGTAACTTGATCGCTCAACATCCACGCAGCCAAAGGGAACGTGGAAAC
AGCACTCAACCAGAGCACATGCCGAGTAACCATCAACATCAAAAGTGGTCGCCTGGACGCTTGCTCAACTGGGGAGCCAATATCGGCCCAGCCACACGAG
AGGTCGTCAATAAGATGCTGAACGCCAAACCTCATCCAGAGCAGGCCTATCGTTCCTGTCTTGGGCTGCTCAATCTGAGTAAAACCTATGGCGAGTCGCG
CCTCGAGCAAGCCTGTAAAGATGCATTGATGCTGACAAAACCCAATTACACCTTCGTCAACAATCTACTCAAGAACAATCGTGAAGGACAACTGAGTAAA
GATAAAGCGAATACGCCGAACCTTGTTCACAGCAATGTTCGTGGCCCGAACTGTTATCACTAGGAGAAAGGATATGAACGCACTGAATGACCAACTCAAA
ACCCTGCGCTTAAGTCATGCGGCGAAAGCGTTAGAGCAGCAACAAGAGCAACTGACCACCTACGCAGAGCTGGACTTCGAGGAGAGGTTAAGCCTACTTC
TGGAAAGTGAAATCTTGAATCGCAATCAAACCAAAATCCAACGCCTGAAACGACAAGCCAAGCTAAGAGTGGATGCTCAGCCGAGCCAACTTATTTACAA
GGAGGGACGAAACCTCAACCGCAAGCAGATGAGCGAACTGCTAACGGGTGGCTATCTGCACAAGCACCAGAACATCTTGATCACAGGCCCAACAGGCGCA
GGTAAAACGTATCTTGGTTGCGCACTGGCAACCAGCGCCTGCGACCAACAGCAAACGGTCAGATACTACCGATTAACTCGCTTGCTCGATGACCTGACCG
CAGGTCGTCTAGATGGTAGTTATCAAAAGCAACTTCAATCGTTGGCTAAGAAAGCTCTACTGATCCTCGACGACTGGGGGATGGAGAAACTGACTCAAGA
ACATGCAGGTCACTTGTTAGAAGTGCTTGAAGACCGCTACCAAAACAGCAGCACAATCGTCATCAGTCAACTACCCGTAAAGGAGTGGTACAACATGATC
GGCAACGCCACCGTCGCAGACGCTCTCATGGATAGGCTGGTACACAATAGTCATCGAATAGAACTGGGAGGCGAGTCAATGAGAAAACTGGCGCAATCCG
ATCACTTAGAGTAAAAATAGGAAGAGAGAAAAACGGCAGGATCAGGTGATCGGAATAAACCGAAACGAGCGATCGCAATCACCGAAATACGCA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1533 bp510 aa2311763+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAKKRTPMNKIKEVLRLKYDCGLSNRSIASCLKLGPSTISELLTRFKQSQLGWPLPEGCSDTELTQVLYHGKKACRDKVMPDFTQYAVELRRKGMTKMLL
WQEYHEQYQEQAYAYTQFCEHFTRWFKTQKRSMRQLHVAGDKLFIDYCGPRLQVVNPDTGEVREAEVFVASLGASNYTYVEAFPSQGKSYWLEAHANAFE
HFGGVPHLLVPDNLRSAVTKANRYEPRLNDSYQKLANHYQTAVMPARPYKPKDKAKAENAVLLVERWIMMRLRHQTFHTFKELNLAIRELMNDLNEREMK
QYGASRKALFDKLDKPALKPLPKQRYLYTETKRAKVGPDYHIEYRRHYYSVPHQLVGHHVELEGSNRLVQIYHQGNLIAQHPRSQRERGNSTQPEHMPSN
HQHQKWSPGRLLNWGANIGPATREVVNKMLNAKPHPEQAYRSCLGLLNLSKTYGESRLEQACKDALMLTKPNYTFVNNLLKNNREGQLSKDKANTPNLVH
SNVRGPNCYH

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
780 bp259 aa17352514+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MFVARTVITRRKDMNALNDQLKTLRLSHAAKALEQQQEQLTTYAELDFEERLSLLLESEILNRNQTKIQRLKRQAKLRVDAQPSQLIYKEGRNLNRKQMS
ELLTGGYLHKHQNILITGPTGAGKTYLGCALATSACDQQQTVRYYRLTRLLDDLTAGRLDGSYQKQLQSLAKKALLILDDWGMEKLTQEHAGHLLEVLED
RYQNSSTIVISQLPVKEWYNMIGNATVADALMDRLVHNSHRIELGGESMRKLAQSDHLE

 

Blast result :
Comments
ISVch3 is 66% (ORFA) and 67% (ORFB) aa similar to ISSso4.
References