IS153
- Family IS3
- Group IS3
Isoform Synonym(s) ISLsa5
Accession number | Transposition | Origin | Host |
---|---|---|---|
AJ239042 | ND | Lactobacillus sanfranciscensis | Lactobacillus sanfranciscensis |
DNA section
IS Length : 1127 bp
Ends
IR Length : 27/37
IRL : TGGATGTAAGCTGATTCCTGAGACAACTTTTAAGAGAGGGTATAATGAAT
IRR : TGGATTGAAGTCAATATTTGAGACAGATTTTAAGAGACATTCAGAACCGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
TGGATGTAAGCTGATTCCTGAGACAACTTTTAAGAGAGGGTATAATGAATAAATCGTCTCTCAAAAGGAAGGAATTTTTACATGCCAACTCGTTACGACA
AAGAATTCAAACAAAACATTATCAACCTATATAAGCAAGGCGAATCAGCTGCCCAACTGGCCAGAGAATATGGCATTGGCTATTCAACAGTTCATAAGTG
GATCCAGGGCCAGGCCAAAACTCAATCCGGTAAATCGCCAGACGAAATCAAAGCGATGGAAAAGCGACTGGCTTCGCTGTCTGAGGAGAACGAAATCCTA
AAAAAAGCCCTGGGCTTCCTTGCGCAGAAGTAACCAATATCTTTGATTACATTCACCAAGAAAGCCATCACCACCAGGTAACCAAGATGTGCCGAATCCT
CGGTGTTTCCAGAGCTCAGTATTATCGTTATCGATCCCCCAAACCTTCAAAACGCCGGGCCGAAGATGCGGACTTGAAACAACGGATTCTGCGGATCTTT
GCGGAATTTAAGCAACGATACGGTGTTATGAAGATCCACCATGAATTGAATCTGGAACTTCAACCACTGCAGCTTCGGTGCAGTCCACGACGGATTATCG
GCTATTCGTTCTCAAAAAAGATGAATACTGATTTAGTCTTAAAGACCCTTGAAAACGCGGTTAAAAATCGAACCATTACTGGGGACCTGATTATCCATAC
GGATTTAGGATCACAGTATACCAGCGATGATTACAACCAACGTTTAACTGAACTACATATCCGCCACTCATACAGCCGTAAGGGTTGTCCATATGATAAT
GCGCCAATGGAATCCTTTCACGCTTCCCTCAAAAAGGAATGTGTTTACCCAGTGCCGGTCTTTGAAGATTATGAAACTGCCGCTGCCGTCCTTTTTGAAT
ATGTGCATGCTATTCTACAATAGGAAGAGAATTCATAGTTCACTGGGCTACCAGACCCCCTTACAAGTTGAAATTGCAACACTTACGAGCCAAATGGCCA
CCTGATTTAATGCTTTCCAGGGTTCAAATAAGTTATTAATCGCGATTAATGATTTATTTGAGCTGTGGAAGGTAAACGCGGTTCTGAATGTCTCTTAAAA
TCTGTCTCAAATATTGACTTCAATCCA
AAGAATTCAAACAAAACATTATCAACCTATATAAGCAAGGCGAATCAGCTGCCCAACTGGCCAGAGAATATGGCATTGGCTATTCAACAGTTCATAAGTG
GATCCAGGGCCAGGCCAAAACTCAATCCGGTAAATCGCCAGACGAAATCAAAGCGATGGAAAAGCGACTGGCTTCGCTGTCTGAGGAGAACGAAATCCTA
AAAAAAGCCCTGGGCTTCCTTGCGCAGAAGTAACCAATATCTTTGATTACATTCACCAAGAAAGCCATCACCACCAGGTAACCAAGATGTGCCGAATCCT
CGGTGTTTCCAGAGCTCAGTATTATCGTTATCGATCCCCCAAACCTTCAAAACGCCGGGCCGAAGATGCGGACTTGAAACAACGGATTCTGCGGATCTTT
GCGGAATTTAAGCAACGATACGGTGTTATGAAGATCCACCATGAATTGAATCTGGAACTTCAACCACTGCAGCTTCGGTGCAGTCCACGACGGATTATCG
GCTATTCGTTCTCAAAAAAGATGAATACTGATTTAGTCTTAAAGACCCTTGAAAACGCGGTTAAAAATCGAACCATTACTGGGGACCTGATTATCCATAC
GGATTTAGGATCACAGTATACCAGCGATGATTACAACCAACGTTTAACTGAACTACATATCCGCCACTCATACAGCCGTAAGGGTTGTCCATATGATAAT
GCGCCAATGGAATCCTTTCACGCTTCCCTCAAAAAGGAATGTGTTTACCCAGTGCCGGTCTTTGAAGATTATGAAACTGCCGCTGCCGTCCTTTTTGAAT
ATGTGCATGCTATTCTACAATAGGAAGAGAATTCATAGTTCACTGGGCTACCAGACCCCCTTACAAGTTGAAATTGCAACACTTACGAGCCAAATGGCCA
CCTGATTTAATGCTTTCCAGGGTTCAAATAAGTTATTAATCGCGATTAATGATTTATTTGAGCTGTGGAAGGTAAACGCGGTTCTGAATGTCTCTTAAAA
TCTGTCTCAAATATTGACTTCAATCCA
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
252 bp | 83 aa | 82 | 333 | + | No |
Description : First part of the transposase
ORF sequence :
MPTRYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLASLSEENEILKKALGFLAQK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
639 bp | 212 aa | 285 | 923 | + | No |
Description : Second part of the transposase
ORF sequence :
GERNPKKSPGLPCAEVTNIFDYIHQESHHHQVTKMCRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQLRCS
PRRIIGYSFSKKMNTDLVLKTLENAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAA
AVLFEYVHAILQ
PRRIIGYSFSKKMNTDLVLKTLENAVKNRTITGDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAA
AVLFEYVHAILQ
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
842 bp | 280 aa | 82 | 923 | + | Yes |
Chemistry : DDE
ORF sequence :
MPTRYDKEFKQNIINLYKQGESAAQLAREYGIGYSTVHKWIQGQAKTQSGKSPDEIKAMEKRLASLSEENEILKKSPGLPCAEVTNIFDYIHQESHHHQV
TKMCRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQLRCSPRRIIGYSFSKKMNTDLVLKTLENAVKNRTIT
GDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAILQ
TKMCRILGVSRAQYYRYRSPKPSKRRAEDADLKQRILRIFAEFKQRYGVMKIHHELNLELQPLQLRCSPRRIIGYSFSKKMNTDLVLKTLENAVKNRTIT
GDLIIHTDLGSQYTSDDYNQRLTELHIRHSYSRKGCPYDNAPMESFHASLKKECVYPVPVFEDYETAAAVLFEYVHAILQ
Blast result :
Comments
IS153 is 62% (ORF1) and 75% (ORF2) aa similar to IS981.
Note : there is several differencies between the NCBI sequence and the sequence of the paper ...
There is a potential frameshift window 5'- AAAAAAG-3'.
ISLsa5 is an isoform of IS153. Accession number : EU402605. The IS is mutated and carries an indel.
Note : there is several differencies between the NCBI sequence and the sequence of the paper ...
There is a potential frameshift window 5'- AAAAAAG-3'.
ISLsa5 is an isoform of IS153. Accession number : EU402605. The IS is mutated and carries an indel.
References
1] Ehrmann,M.A. and Vogel,R.F. (2001) System Appl. Microbiol. 24, 443-450.
2] Chaillou,S., Daty,M., Baraige,F., Dudez,A.M., Anglade,P., Jones,R., Alpert,C.A., Champomier-Verges,M.C. and Zagorec,M. (2009) Appl. Environ. Microbiol. 75 (4), 970-980.
2] Chaillou,S., Daty,M., Baraige,F., Dudez,A.M., Anglade,P., Jones,R., Alpert,C.A., Champomier-Verges,M.C. and Zagorec,M. (2009) Appl. Environ. Microbiol. 75 (4), 970-980.