ISSba9

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009997 ND Shewanella baltica
Shewanella baltica OS195
DNA section
IS Length : 1296 bp

Ends


IR Length : 18/24

IRL : GGTAGTGTTCAGAAATCTGTGTCATTTCAGTATTATTAAGGAAAAAGGAA
IRR : GAGGGCGTTCAAAATTCTGTGTCAGCTTAAAATTCAATCACAGCCCCAGA

Insertion site


Left flankDirect repeatRight flankDR Length
CGTAAAGTTATGGTAATACTTGTTTATA8
AGATAACGAACCTTTTGAAGCTTATAGT8

DNA sequence

GGTAGTGTTCAGAAATCTGTGTCATTTCAGTATTATTAAGGAAAAAGGAATGACACATGAGTAAAGCATTTGATTTTGAAGCTGCCGTTAAAGCATTACG
TGATGGGCAAGGACTAAGTGGCACTGATGGGATCTTAACCCCTCTGATTAAGCAGTTAACTGAAGCTGCTTTAAACGCTGAACTTGAACAACATCTCGCA
AACGATGACCAGCCAAATCGTAAAAATGGCAAGGCTTCAAAAAAGATAAAGTCAATGGCAGGCAATTTCGAACTTGAAACGCCTCGAGATCGGGCGGGGT
CGTTCGAGCCACAACTGGTTAAGAAAAATCAGACTCGTTTAACTGATGATTTGGAACGTAAAATTCTATCCATGTTTGCTCTGGGCATGAGCTATCGAGA
TATGCGGGCCCATGTTCAAGAAATGTATGATATGGATATCTCTGAGGCCACCATCAGCTCTGTCACCGACCAACTTCTTCCTAAATTGAAAGAGTGGCGC
CAGCGTCAACTCGATGCCATTTATCCTATCGTTTGGCTCGATGCGATCCATTACAAAGTCAAAGATGAAGGTCGTTATGCCCACAAGGCCATCTATACGT
TACTGGGCGTTAATCTAGAAGGAAAAAAAGAACTTATAGGTCTCTATCTATCTGAAACTGAAGGTGCAAATCACTGGCTAACAGTGCTGACCGATCTTCA
CAACCGAGGGGTTGAAGACATATTAATTGCTTGTGTGGATGGGCTTACTGGCTTTCCTGAGGCCATTGCGGCCATCTATCCCAAGACTGAGGTACAGTTG
TGTATCATTCATCAGATCCGCAGCTCACTTAAATATGTTGCGTCAAAGGATCAAAAAGCCTTCATGGCAGATCTTAAACTGGTCTACCGCGCCTCGACAC
TGGAGGTCGCAGCAGCATCTCTGGATGATTTGGAGGAAAAATGGGGTGAGCAGTACCCGATAGTCATCAAGTCCTGGCGTAACAAATGGGTGAACCTGTC
TGCTTACTTTAAATACCCACACTATATCCGCAAGGCCATTTACACCACGAATGCTATTGAGGCTGTACACAGGCAGTTTAGGAAACTCACCAAAACTAAA
GGCGCTTTCCCGAATGAAAATAGCTTGCTGAAGTTATTATACGCGGGCATATTGAACGCCTCGAAAAAATGGACCATGCCAATCCAAAATTGGGGGCCTA
CGCTATCTCAATTGGCAATTCATTTTGATGGTCGCTTAGATGATGCTCTGGGGCTGTGATTGAATTTTAAGCTGACACAGAATTTTGAACGCCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1203 bp400 aa571259+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKAFDFEAAVKALRDGQGLSGTDGILTPLIKQLTEAALNAELEQHLANDDQPNRKNGKASKKIKSMAGNFELETPRDRAGSFEPQLVKKNQTRLTDDLE
RKILSMFALGMSYRDMRAHVQEMYDMDISEATISSVTDQLLPKLKEWRQRQLDAIYPIVWLDAIHYKVKDEGRYAHKAIYTLLGVNLEGKKELIGLYLSE
TEGANHWLTVLTDLHNRGVEDILIACVDGLTGFPEAIAAIYPKTEVQLCIIHQIRSSLKYVASKDQKAFMADLKLVYRASTLEVAAASLDDLEEKWGEQY
PIVIKSWRNKWVNLSAYFKYPHYIRKAIYTTNAIEAVHRQFRKLTKTKGAFPNENSLLKLLYAGILNASKKWTMPIQNWGPTLSQLAIHFDGRLDDALGL

 

Blast result :
Comments
There is one copy of ISSba9 on the chromosome and one on plasmid 3 from S. baltica OS195. The transposase encoded by ISSba8 has 72% identity with the ISSde5 transposase.
References
[1] Romine, M. (2008) Direct submission.