ISSba9
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009997 | ND | Shewanella baltica | Shewanella baltica OS195 |
DNA section
IS Length : 1296 bp
Ends
IR Length : 18/24
IRL : GGTAGTGTTCAGAAATCTGTGTCATTTCAGTATTATTAAGGAAAAAGGAA
IRR : GAGGGCGTTCAAAATTCTGTGTCAGCTTAAAATTCAATCACAGCCCCAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGTAAAGTTA | TGGTAATA | CTTGTTTATA | 8 |
AGATAACGAA | CCTTTTGA | AGCTTATAGT | 8 |
DNA sequence
GGTAGTGTTCAGAAATCTGTGTCATTTCAGTATTATTAAGGAAAAAGGAATGACACATGAGTAAAGCATTTGATTTTGAAGCTGCCGTTAAAGCATTACG
TGATGGGCAAGGACTAAGTGGCACTGATGGGATCTTAACCCCTCTGATTAAGCAGTTAACTGAAGCTGCTTTAAACGCTGAACTTGAACAACATCTCGCA
AACGATGACCAGCCAAATCGTAAAAATGGCAAGGCTTCAAAAAAGATAAAGTCAATGGCAGGCAATTTCGAACTTGAAACGCCTCGAGATCGGGCGGGGT
CGTTCGAGCCACAACTGGTTAAGAAAAATCAGACTCGTTTAACTGATGATTTGGAACGTAAAATTCTATCCATGTTTGCTCTGGGCATGAGCTATCGAGA
TATGCGGGCCCATGTTCAAGAAATGTATGATATGGATATCTCTGAGGCCACCATCAGCTCTGTCACCGACCAACTTCTTCCTAAATTGAAAGAGTGGCGC
CAGCGTCAACTCGATGCCATTTATCCTATCGTTTGGCTCGATGCGATCCATTACAAAGTCAAAGATGAAGGTCGTTATGCCCACAAGGCCATCTATACGT
TACTGGGCGTTAATCTAGAAGGAAAAAAAGAACTTATAGGTCTCTATCTATCTGAAACTGAAGGTGCAAATCACTGGCTAACAGTGCTGACCGATCTTCA
CAACCGAGGGGTTGAAGACATATTAATTGCTTGTGTGGATGGGCTTACTGGCTTTCCTGAGGCCATTGCGGCCATCTATCCCAAGACTGAGGTACAGTTG
TGTATCATTCATCAGATCCGCAGCTCACTTAAATATGTTGCGTCAAAGGATCAAAAAGCCTTCATGGCAGATCTTAAACTGGTCTACCGCGCCTCGACAC
TGGAGGTCGCAGCAGCATCTCTGGATGATTTGGAGGAAAAATGGGGTGAGCAGTACCCGATAGTCATCAAGTCCTGGCGTAACAAATGGGTGAACCTGTC
TGCTTACTTTAAATACCCACACTATATCCGCAAGGCCATTTACACCACGAATGCTATTGAGGCTGTACACAGGCAGTTTAGGAAACTCACCAAAACTAAA
GGCGCTTTCCCGAATGAAAATAGCTTGCTGAAGTTATTATACGCGGGCATATTGAACGCCTCGAAAAAATGGACCATGCCAATCCAAAATTGGGGGCCTA
CGCTATCTCAATTGGCAATTCATTTTGATGGTCGCTTAGATGATGCTCTGGGGCTGTGATTGAATTTTAAGCTGACACAGAATTTTGAACGCCCTC
TGATGGGCAAGGACTAAGTGGCACTGATGGGATCTTAACCCCTCTGATTAAGCAGTTAACTGAAGCTGCTTTAAACGCTGAACTTGAACAACATCTCGCA
AACGATGACCAGCCAAATCGTAAAAATGGCAAGGCTTCAAAAAAGATAAAGTCAATGGCAGGCAATTTCGAACTTGAAACGCCTCGAGATCGGGCGGGGT
CGTTCGAGCCACAACTGGTTAAGAAAAATCAGACTCGTTTAACTGATGATTTGGAACGTAAAATTCTATCCATGTTTGCTCTGGGCATGAGCTATCGAGA
TATGCGGGCCCATGTTCAAGAAATGTATGATATGGATATCTCTGAGGCCACCATCAGCTCTGTCACCGACCAACTTCTTCCTAAATTGAAAGAGTGGCGC
CAGCGTCAACTCGATGCCATTTATCCTATCGTTTGGCTCGATGCGATCCATTACAAAGTCAAAGATGAAGGTCGTTATGCCCACAAGGCCATCTATACGT
TACTGGGCGTTAATCTAGAAGGAAAAAAAGAACTTATAGGTCTCTATCTATCTGAAACTGAAGGTGCAAATCACTGGCTAACAGTGCTGACCGATCTTCA
CAACCGAGGGGTTGAAGACATATTAATTGCTTGTGTGGATGGGCTTACTGGCTTTCCTGAGGCCATTGCGGCCATCTATCCCAAGACTGAGGTACAGTTG
TGTATCATTCATCAGATCCGCAGCTCACTTAAATATGTTGCGTCAAAGGATCAAAAAGCCTTCATGGCAGATCTTAAACTGGTCTACCGCGCCTCGACAC
TGGAGGTCGCAGCAGCATCTCTGGATGATTTGGAGGAAAAATGGGGTGAGCAGTACCCGATAGTCATCAAGTCCTGGCGTAACAAATGGGTGAACCTGTC
TGCTTACTTTAAATACCCACACTATATCCGCAAGGCCATTTACACCACGAATGCTATTGAGGCTGTACACAGGCAGTTTAGGAAACTCACCAAAACTAAA
GGCGCTTTCCCGAATGAAAATAGCTTGCTGAAGTTATTATACGCGGGCATATTGAACGCCTCGAAAAAATGGACCATGCCAATCCAAAATTGGGGGCCTA
CGCTATCTCAATTGGCAATTCATTTTGATGGTCGCTTAGATGATGCTCTGGGGCTGTGATTGAATTTTAAGCTGACACAGAATTTTGAACGCCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1203 bp | 400 aa | 57 | 1259 | + | No |
Chemistry : DDE
ORF sequence :
MSKAFDFEAAVKALRDGQGLSGTDGILTPLIKQLTEAALNAELEQHLANDDQPNRKNGKASKKIKSMAGNFELETPRDRAGSFEPQLVKKNQTRLTDDLE
RKILSMFALGMSYRDMRAHVQEMYDMDISEATISSVTDQLLPKLKEWRQRQLDAIYPIVWLDAIHYKVKDEGRYAHKAIYTLLGVNLEGKKELIGLYLSE
TEGANHWLTVLTDLHNRGVEDILIACVDGLTGFPEAIAAIYPKTEVQLCIIHQIRSSLKYVASKDQKAFMADLKLVYRASTLEVAAASLDDLEEKWGEQY
PIVIKSWRNKWVNLSAYFKYPHYIRKAIYTTNAIEAVHRQFRKLTKTKGAFPNENSLLKLLYAGILNASKKWTMPIQNWGPTLSQLAIHFDGRLDDALGL
RKILSMFALGMSYRDMRAHVQEMYDMDISEATISSVTDQLLPKLKEWRQRQLDAIYPIVWLDAIHYKVKDEGRYAHKAIYTLLGVNLEGKKELIGLYLSE
TEGANHWLTVLTDLHNRGVEDILIACVDGLTGFPEAIAAIYPKTEVQLCIIHQIRSSLKYVASKDQKAFMADLKLVYRASTLEVAAASLDDLEEKWGEQY
PIVIKSWRNKWVNLSAYFKYPHYIRKAIYTTNAIEAVHRQFRKLTKTKGAFPNENSLLKLLYAGILNASKKWTMPIQNWGPTLSQLAIHFDGRLDDALGL
Blast result :
Comments
There is one copy of ISSba9 on the chromosome and one on plasmid 3 from S. baltica OS195. The transposase encoded by ISSba8 has 72% identity with the ISSde5 transposase.
References
[1] Romine, M. (2008) Direct submission.