IS1021
- Family IS5
- Group IS5
Isoform Synonym(s) ISRso3
Accession number | Transposition | Origin | Host |
---|---|---|---|
AF183890 | ND | Ralstonia solanacearum | Ralstonia solanacearum |
DNA section
IS Length : 1209 bp
Ends
IR Length : 11/12
IRL : GGAAACGCTGATTTATCAGTCTCAGCCGTCATCGCTGACGCAGCTGAGGC
IRR : GGAACCGCTGATCAATGAAGTCGGCGAATGGAATCGCGAGTCATGCCATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTATATTCGT | CTAG | GTCAGGATTT | 4 |
CGGGTTTTCC | CTAG | GTTGATGGAA | 4 |
DNA sequence
GGAAACGCTGATTTATCAGTCTCAGCCGTCATCGCTGACGCAGCTGAGGCCGTTGTAGCAGGTAGCTCACGGAACGGAGCCATAGTGATGAAGCGGCAGA
TGAGCTTTGCAGAAGCGGAAAGCGCAGGTAAGAAGCGCGTGACCAAACGCCAGCGCTTCCTGGCAGAGATGGAGAAGGTCGTGCCGTGGCAGCGCTTGCT
GTCGGCGATTGGGCCCCACTATCCGAGAGGCGAGCGAGGTCGCCCGCCGATTGGTCTGGAGAGGATGCTGCGGATCTACTTCCTGCAGCAGTGGTACGGG
CTGTCGGACGAAGGTCTGGAAGACGCGCTGCACGACAGTATGGCGATGCGAGCCTTCGCCGGCATCGATCTGGCGGTCGAGGACGTGCCGGATGCGACCA
CGCTGTTGAAGTTCCGACGCCTGCTCAACGAACACGACTTGACGCGAAAGCTGTTCGACGAGATCGGCATCATGCTGTGCGAGCGGGGGCTGATGATGAA
GGAAGGCACGATCGTGGATGCCACCATCATTGAAGCGCCGCCGTCGACGAAGAACGCCGACAAGAGCCGCGACCCGGAGATGCATCAGACCAAGAAAGGC
AACGAGTGGCACTTCGGAATGAAGGCGCATATCGGAGTCGATGCGTCGTCGGGCTTGGTGCACAGCGTGGTTGGCACGGCAGCCAATGCGTCCGATGTGT
CGCAGGCCCACGCGCTGCTGCATGGCCACGAGACGGATGCGTTTGGCGATGCGGGCTACACCGGCGTTGAGAAGCGCGACGCGATGCAAGGCAAGCGAGC
GACGTGGCATGTCGCGATCAAGCGCGGCAAGATCAAAGCGATGCGCGAAGGCCCAATCAAGGACTTGCTGATCGCGGTGGAGCGAACCAAGGCACAGATT
CGGGCTCGGGTCGAACATCCGTTCCATGTCATCAAGAATCTGTTTGGTCATCGCAAGGTTCGTTACAAGGGCTTGGCCAAGAACACGGCGCAACTGTTCA
GCCTGTTTGGTTTGGCCAATCTGGTGCTCGCCAGGAGGCAGTTGCTGGCCAGTCCTGGGAGCATTGCGTCCTGAGCGCGCAAAGCGCGCCAAGATAGGTG
CGAAAGCAGCGAAAAACCGTGCTGAATCGAAGCATCCCTTCCTCAATCCGAAAAACCAAGATGGCATGACTCGCGATTCCATTCGCCGACTTCATTGATC
AGCGGTTCC
TGAGCTTTGCAGAAGCGGAAAGCGCAGGTAAGAAGCGCGTGACCAAACGCCAGCGCTTCCTGGCAGAGATGGAGAAGGTCGTGCCGTGGCAGCGCTTGCT
GTCGGCGATTGGGCCCCACTATCCGAGAGGCGAGCGAGGTCGCCCGCCGATTGGTCTGGAGAGGATGCTGCGGATCTACTTCCTGCAGCAGTGGTACGGG
CTGTCGGACGAAGGTCTGGAAGACGCGCTGCACGACAGTATGGCGATGCGAGCCTTCGCCGGCATCGATCTGGCGGTCGAGGACGTGCCGGATGCGACCA
CGCTGTTGAAGTTCCGACGCCTGCTCAACGAACACGACTTGACGCGAAAGCTGTTCGACGAGATCGGCATCATGCTGTGCGAGCGGGGGCTGATGATGAA
GGAAGGCACGATCGTGGATGCCACCATCATTGAAGCGCCGCCGTCGACGAAGAACGCCGACAAGAGCCGCGACCCGGAGATGCATCAGACCAAGAAAGGC
AACGAGTGGCACTTCGGAATGAAGGCGCATATCGGAGTCGATGCGTCGTCGGGCTTGGTGCACAGCGTGGTTGGCACGGCAGCCAATGCGTCCGATGTGT
CGCAGGCCCACGCGCTGCTGCATGGCCACGAGACGGATGCGTTTGGCGATGCGGGCTACACCGGCGTTGAGAAGCGCGACGCGATGCAAGGCAAGCGAGC
GACGTGGCATGTCGCGATCAAGCGCGGCAAGATCAAAGCGATGCGCGAAGGCCCAATCAAGGACTTGCTGATCGCGGTGGAGCGAACCAAGGCACAGATT
CGGGCTCGGGTCGAACATCCGTTCCATGTCATCAAGAATCTGTTTGGTCATCGCAAGGTTCGTTACAAGGGCTTGGCCAAGAACACGGCGCAACTGTTCA
GCCTGTTTGGTTTGGCCAATCTGGTGCTCGCCAGGAGGCAGTTGCTGGCCAGTCCTGGGAGCATTGCGTCCTGAGCGCGCAAAGCGCGCCAAGATAGGTG
CGAAAGCAGCGAAAAACCGTGCTGAATCGAAGCATCCCTTCCTCAATCCGAAAAACCAAGATGGCATGACTCGCGATTCCATTCGCCGACTTCATTGATC
AGCGGTTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
987 bp | 328 aa | 88 | 1074 | + | No |
Chemistry : DDE
ORF sequence :
MKRQMSFAEAESAGKKRVTKRQRFLAEMEKVVPWQRLLSAIGPHYPRGERGRPPIGLERMLRIYFLQQWYGLSDEGLEDALHDSMAMRAFAGIDLAVEDV
PDATTLLKFRRLLNEHDLTRKLFDEIGIMLCERGLMMKEGTIVDATIIEAPPSTKNADKSRDPEMHQTKKGNEWHFGMKAHIGVDASSGLVHSVVGTAAN
ASDVSQAHALLHGHETDAFGDAGYTGVEKRDAMQGKRATWHVAIKRGKIKAMREGPIKDLLIAVERTKAQIRARVEHPFHVIKNLFGHRKVRYKGLAKNT
AQLFSLFGLANLVLARRQLLASPGSIAS
PDATTLLKFRRLLNEHDLTRKLFDEIGIMLCERGLMMKEGTIVDATIIEAPPSTKNADKSRDPEMHQTKKGNEWHFGMKAHIGVDASSGLVHSVVGTAAN
ASDVSQAHALLHGHETDAFGDAGYTGVEKRDAMQGKRATWHVAIKRGKIKAMREGPIKDLLIAVERTKAQIRARVEHPFHVIKNLFGHRKVRYKGLAKNT
AQLFSLFGLANLVLARRQLLASPGSIAS
Blast result :
Comments
70% aa homologous with IS1646, 71% with IS1384 and 73% with ISPssy.
There are 2 copies of IS1021 on the megaplasmid of Ralstonia solanacearum.
There are 2 copies of IS1021 on the megaplasmid of Ralstonia solanacearum.
References
1] Jeong,E.-L. and Timmis,J.N. (1999) Direct submission GenBank.