ISYps1
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
Y | Yersinia pseudotuberculosis | Yersinia pseudotuberculosis IP32637 plasmid pMT4 |
DNA section
IS Length : 809 bp
Ends
IR Length : 16
IRL : GGTTCTGTCGCATTAAGGCGTTATCAGGTAGCATGCTGTTTTTTTACTAT
IRR : GGTTCTGTCGCATTAACAGAGCAGAGTCAGCAAAAGTTGCGCTGCTGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
NNNNNNNNNN | AAAATAGG | NNNNNNNNNN | 8 |
NNNNNNNNNN | TATTTGAA | NNNNNNNNNN | 8 |
DNA sequence
GGTTCTGTCGCATTAAGGCGTTATCAGGTAGCATGCTGTTTTTTTACTATGTTGCCTGCCCATGTCTCTAATAAGAAAAGCCTTCCGTCGCCTGCATTAT
CCCACTGATGTTATCGTTCAGTGTGTTCGCTGGTATCTCGCTTATGCCCTCAGCCTGCGTAATCTCGAGGAGATGATGGCAGAGCGCGGTATTATTGTTG
ACCACTCCACGCTTCACCGTTGGGTCATCCGTATGGTGCCCTTGCTGGATAAGGTATTTCGACGACATAAACGCTCAGTAGGTCGTCGGTGGCGCATGGA
TGAAACCTACATCAAAGTCAAAGGTCAGTGGAAATATCTGTACCGCGCGGTCGATACTTCAGGCCAGACCATCGACTTCCTGCTGACCGCCAAACGGGAT
GCTGCAGCTGCATTACGCTTCTTTCGCAAAGCCATTCGACACCACGATGAACCTGAGATAGTGACCCTTGATAAAAGTGGTGCCAACACGGCAGCGCTGA
CTACACTCAACGCCGACAAACCAGAAGAAGAAACCATTACTGTCAGGCAGAACAAGTATCTGAATAACCTGATTGAGCAGGATCACCGAAATATCAAACG
TCGGATACGCCTGATGCTGGGATTCAAATCGTTCCGGCGGGCACAGACGCTCCTGATTGGCATCGAATTGATCCACATGATACGTAAAGGGCAATATCAG
CATCCCGCCGGAGCGCGTTTATCACCCGCGGAACAATTTTATCTGTTGGTTGCCTAATAAAGCAGCAGCGCAACTTTTGCTGACTCTGCTCTGTTAATGC
GACAGAACC
CCCACTGATGTTATCGTTCAGTGTGTTCGCTGGTATCTCGCTTATGCCCTCAGCCTGCGTAATCTCGAGGAGATGATGGCAGAGCGCGGTATTATTGTTG
ACCACTCCACGCTTCACCGTTGGGTCATCCGTATGGTGCCCTTGCTGGATAAGGTATTTCGACGACATAAACGCTCAGTAGGTCGTCGGTGGCGCATGGA
TGAAACCTACATCAAAGTCAAAGGTCAGTGGAAATATCTGTACCGCGCGGTCGATACTTCAGGCCAGACCATCGACTTCCTGCTGACCGCCAAACGGGAT
GCTGCAGCTGCATTACGCTTCTTTCGCAAAGCCATTCGACACCACGATGAACCTGAGATAGTGACCCTTGATAAAAGTGGTGCCAACACGGCAGCGCTGA
CTACACTCAACGCCGACAAACCAGAAGAAGAAACCATTACTGTCAGGCAGAACAAGTATCTGAATAACCTGATTGAGCAGGATCACCGAAATATCAAACG
TCGGATACGCCTGATGCTGGGATTCAAATCGTTCCGGCGGGCACAGACGCTCCTGATTGGCATCGAATTGATCCACATGATACGTAAAGGGCAATATCAG
CATCCCGCCGGAGCGCGTTTATCACCCGCGGAACAATTTTATCTGTTGGTTGCCTAATAAAGCAGCAGCGCAACTTTTGCTGACTCTGCTCTGTTAATGC
GACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
684 bp | 231 aa | 62 | 745 | + | No |
Chemistry : DDE
ORF sequence :
MSLIRKAFRRLHYPTDVIVQCVRWYLAYALSLRNLEEMMAERGIIVDHSTLHRWVIRMVPLLDKVFRRHKRSVGRRWRMDETYIKVKGQWKYLYRAVDTS
GQTIDFLLTAKRDAAAALRFFRKAIRHHDEPEIVTLDKSGANTAALTTLNADKPEEETITVRQNKYLNNLIEQDHRNIKRRIRLMLGFKSFRRAQTLLIG
IELIHMIRKGQYQHPAGARLSPAEQFYLLVA
GQTIDFLLTAKRDAAAALRFFRKAIRHHDEPEIVTLDKSGANTAALTTLNADKPEEETITVRQNKYLNNLIEQDHRNIKRRIRLMLGFKSFRRAQTLLIG
IELIHMIRKGQYQHPAGARLSPAEQFYLLVA
Blast result :
Comments
ISYps1 is 68% aa similar to IS240C.
References
1] Didier Mazel (2008) Direct submission.