ISYps1

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
Y Yersinia pseudotuberculosis
Yersinia pseudotuberculosis IP32637 plasmid pMT4
DNA section
IS Length : 809 bp

Ends


IR Length : 16

IRL : GGTTCTGTCGCATTAAGGCGTTATCAGGTAGCATGCTGTTTTTTTACTAT
IRR : GGTTCTGTCGCATTAACAGAGCAGAGTCAGCAAAAGTTGCGCTGCTGCTT

Insertion site


Left flankDirect repeatRight flankDR Length
NNNNNNNNNNAAAATAGGNNNNNNNNNN8
NNNNNNNNNNTATTTGAANNNNNNNNNN8

DNA sequence

GGTTCTGTCGCATTAAGGCGTTATCAGGTAGCATGCTGTTTTTTTACTATGTTGCCTGCCCATGTCTCTAATAAGAAAAGCCTTCCGTCGCCTGCATTAT
CCCACTGATGTTATCGTTCAGTGTGTTCGCTGGTATCTCGCTTATGCCCTCAGCCTGCGTAATCTCGAGGAGATGATGGCAGAGCGCGGTATTATTGTTG
ACCACTCCACGCTTCACCGTTGGGTCATCCGTATGGTGCCCTTGCTGGATAAGGTATTTCGACGACATAAACGCTCAGTAGGTCGTCGGTGGCGCATGGA
TGAAACCTACATCAAAGTCAAAGGTCAGTGGAAATATCTGTACCGCGCGGTCGATACTTCAGGCCAGACCATCGACTTCCTGCTGACCGCCAAACGGGAT
GCTGCAGCTGCATTACGCTTCTTTCGCAAAGCCATTCGACACCACGATGAACCTGAGATAGTGACCCTTGATAAAAGTGGTGCCAACACGGCAGCGCTGA
CTACACTCAACGCCGACAAACCAGAAGAAGAAACCATTACTGTCAGGCAGAACAAGTATCTGAATAACCTGATTGAGCAGGATCACCGAAATATCAAACG
TCGGATACGCCTGATGCTGGGATTCAAATCGTTCCGGCGGGCACAGACGCTCCTGATTGGCATCGAATTGATCCACATGATACGTAAAGGGCAATATCAG
CATCCCGCCGGAGCGCGTTTATCACCCGCGGAACAATTTTATCTGTTGGTTGCCTAATAAAGCAGCAGCGCAACTTTTGCTGACTCTGCTCTGTTAATGC
GACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
684 bp231 aa62745+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSLIRKAFRRLHYPTDVIVQCVRWYLAYALSLRNLEEMMAERGIIVDHSTLHRWVIRMVPLLDKVFRRHKRSVGRRWRMDETYIKVKGQWKYLYRAVDTS
GQTIDFLLTAKRDAAAALRFFRKAIRHHDEPEIVTLDKSGANTAALTTLNADKPEEETITVRQNKYLNNLIEQDHRNIKRRIRLMLGFKSFRRAQTLLIG
IELIHMIRKGQYQHPAGARLSPAEQFYLLVA

 

Blast result :
Comments
ISYps1 is 68% aa similar to IS240C.
References
1] Didier Mazel (2008) Direct submission.