ISCpe7

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008262 ND Clostridium perfringens
Clostridium perfringens SM101
DNA section
IS Length : 1274 bp

Ends


IR Length : 11/15

IRL : CGATCTGTTAAGTTAAATGAACATTGCTCTTTTCAACTTTTGAGAATACA
IRR : GAATCTGTTAAGTTGTTATGAAAAAATAGCTTAACTATTCTTAAAATTAC

Insertion site


Left flankDirect repeatRight flankDR Length
ATTTTCTCCTTTCACACTTACTTTTTATTACTA8

DNA sequence

CGATCTGTTAAGTTAAATGAACATTGCTCTTTTCAACTTTTGAGAATACAATGAGTTTGCGAAAAACATTTATCCCCCCTCAAGAAAGGAGAAAAAAGCA
ATGAACAAAACTAATATAAAATGCCCTCGTTGTCATTCGGAAAAACTATATAAGTTTGGATTTGACAAGCAGGCTAATCAAAAATATCAATGTAAAGAAT
GTGGTAGACAATTCGCGCCTGACTCCGTCAGTAGCCGTCCAAAGTCTAAGTACCCTAGATGTCCTAAATGTAATAAAGCCACATATCTTCACCATAAATA
CAAGCACTATAATCGTTATAAATGTGGAAGCAGAAAGTGTAATCATGCTTTCTCTCAATATCACAATTTAAACATAGATTTAGCTTCAAGTGAGAATTTA
ACCGGGTCCCTTTCTATGAAAGGAATGCGTTTTCCACTTCACACGATACTTACAGCTTTAACCTTATATTTTTTAAATAATACTTCAACTAGAGCAATTT
CTCAATTTTTAAAAGTAACATCTAATATCTCGGTTTCACATGTTACTATATCTAGTTGGGTACATAAATTTGCACCTTATTTTAAAGAAAAAGCTAAGAT
ATTTAACGCTCAATTAGATTTAAATTCTGATGATTGGCATGCCGATGAAACCGTGGTGTTTATAAGCGGTAAAAAATATTATCTATGGCTTGCTATAGAC
TCTGAAACACGTTTTGTGTTAGCTTTTCATCTAACACAAGCACGTGATTCTGATGCAGCATTTATTCTTATGAATCAAGCTAAATCTATGGGTAAACCTA
ATAACTTTATCACAGATAGACTACCGTCCTATAATGAAGCAGTTAAAACCGTATTAGACGAAAGTACTCATATTCCTGTACCACCTATGTCTAGTGATAC
AAATAATAACTTAATAGAGTCCTTCAATAAAACATTTAAAGCATGGTATAAAACTAAAAAAGGTTTTAATTCTTTTGAAAAAGCTAATAACTTAATATAT
ATGTTTATATTTCACTATAATTTCATTAGACCTCATGGATCATTAAACGGCTCTACGCCTGCCGAAGTAGCCGGTTTTAGTACTAATGATTCTAATAAAC
ATAATTGGTTTATTGCTGCTTAAATTATTAATATCTTTGATTAACCTGCAAAAAATCAAATCATCTTGCAGGTTTGTTTGCCATGCAAAAATTTATTCAA
ACTTATATAATTTTCAAAGAACGAGTAATTTTAAGAATAGTTAAGCTATTTTTTCATAACAACTTAACAGATTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1023 bp340 aa1011123+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNKTNIKCPRCHSEKLYKFGFDKQANQKYQCKECGRQFAPNSVSSRPKSKYPRCPKCNKATYLHHKYKHYNRYKCGSRKCNHAFSQYHNLNIDLASSENL
TGSLSMKGMRFPLHTILTALTLYFLNNTSTRAISQFLKVTSNISVSHVTISSWVHKFAPYFKEKAKIFNAQLDLNSDDWHADETVVFISGKKYYLWLAID
SETRFVLAFHLTQARDSDAAFILMNQAKSMGKPKHFITDRLPSYNEAVKTVLNESTHIPVPPMSSDTNNNLIESFNKTFKAWYKAKKGFNSFEKANNLVY
MFIFHYNFIRPHGSLNGSTPAEVAGFSTNDSSKHNWFITA

 

Blast result :
Comments
There are 14 copies of ISCpe7 in this strain.
ISCpe7 is 51% aa similar to ISBwe3.
References
1] Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S.A., Khouri,H., Dimitrov,G.I., Watkins,K.L., Mulligan,S., Benton,J., Radune,D., Fisher,D.J., Atkins,H.S., Hiscox,T., Jost,B.H., Billington,S.J., Songer,J.G., McClane,B.A., Titball,R.W., Rood,J.I., Melville,S.B. and Paulsen,I.T.(2006) Genome Res. 16 (8), 1031-1040