ISTps1

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP000924 ND Thermoanaerobacter pseudethanolicus
Thermoanaerobacter pseudethanolicus ATCC 33223
DNA section
IS Length : 1349 bp

Ends


IR Length : 18/23

IRL : CGTTTTGTAAACTTAAATGAAAGTTGAGGACTTCAATCCTTTCTGGTACA
IRR : GGCTTTGTAAAGTAAATATGAAAAAATAGCATAGGATTTCTCATGATAGC

Insertion site


Left flankDirect repeatRight flankDR Length
TACACCTCTCCTCAAATGTGAAATTATTTAGTCATTAAA0

DNA sequence

CGTTTTGTAAACTTAAATGAAAGTTGAGGACTTCAATCCTTTCTGGTACAATGTTTTGCAGGAAAAACAAAATACCTCCCAGAAAGGATGAAGTCCTCAT
GCAAAACATTGTACCATTAAAGTGTCCAAAATGCAATAATACTAGTCTGTTCTACAAATATGGCAAAACTAAAGATGGTTATCAAAAGTATCTTTGCCGT
AAATGCCACCATCAATTTGCTCCTGATAAACCTTCTTCTAAAAAAACTCCTAAATATCCTCGCTGCCCTGTTTGTGGTAAAGCTTCTTTCCTTCATCATG
ATTATGAGTATTACTCTAATTACCGTTGTTGCGATAAAAAGTGTAATCATTCGTTTTTTGTCCCAAAACCTACTGCTATCCCCTCTACTTCTATGTCTAA
GCTCGTTGGCAAAACTAACTTTAAACGCATGCGCTATCCTCTACATATCATTCTCTCTGCTTTGTCTATGTTTTTTCTTGGTAAAAATTCATTTAGAAAT
ATTTCTTTAATTTTAAAAACTACCTTTAATGTTGAGGTCTCTCATACTACTATCAGTAATTGGTGTAGAAAGTTTGCTCCTTTGTTTCACAATATTTCTC
TAGAACTTATTCCTATGTTGAATTTTAATTCTGATGAATGGCATGTAGATGAAACTGTAGTTAAAATCGCTGGTGAAAAATATTATATCTGGTTTGTTAT
AGATTCTGAAACTCGTTTTATTCTGGGTTTTCACCTCACTCCTTATAGAGACTCTAGGCAAGCTTTTGCTTTGCTTAATTCTGTTAGAAATTTAGGAACT
CCTTCTGCTATTGTGAGTGATCGCTACAGTGCTTATAAAGTACCTGTTAAGTCTTTATTTGGTTACAGTGTTAAACATATTAGGGTTGAAAGCTTTAAGA
ATGACATCTCTAATAATTTGATAGAATCTTTCCACCATCAGTTTAAGGCCTGGTATAAGGCTAAACAGGGTTTTGCTTCTTTTGAATCAGCTAATAATTT
AATCAGTATGTTTGTGTTTTTTTACAATTTTGTAAGGCCTCATTCTTCTCTCAATGGTTGGACACCGGCTCAGGTGGCTGGTTTAAATCTTACTCCAAAA
GAAAAGAAAAAGTATTTGTTAGTTGCTTGAAGCAGTCTTCTCTTCTTAATCAATAAACTAGTAAATGGTTACCCTTGGAAATAGCAAGGGTATGCTTCCC
TATGCCTTTTTTGCTTTTGCTATAAATTGGATTTCGGTTTTCCTCATTCTTTTTATTGATTTTTTACCTCGTTTCGCTATATTTTGGACAAATTTTGAAG
CTATCATGAGAAATCCTATGCTATTTTTTCATATTTACTTTACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1032 bp343 aa991130+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQNIVPLKCPKCNNTSLFYKYGKTKDGYQKYLCRKCHHQFAPDKPSSKKTPKYPRCPVCGKASFLHHDYEYYSNYRCCDKKCNHSFFVPKPTAIPSTSMS
KLVGKTNFKRMRYPLHIILSALSMFFLGKNSFRNISLILKTTFNVEVSHTTISNWCRKFAPLFHNISLELIPMLNFNSDEWHVDETVVKIAGEKYYIWFV
IDSETRFILGFHLTPYRDSRQAFALLNSVRNLGTPSAIVSDRYSAYKVPVKSLFGYSVKHIRVESFKNDISNNLIESFHHQFKAWYKAKQGFASFESANN
LISMFVFFYNFVRPHSSLNGWTPAQVAGLNLTPKEKKKYLLVA

 

Blast result :
Comments
ISTps1 is 95% aa similar to ISTsp1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Bruce,D., Goodwin,L., Saunders,E., Brettin,T., Detter,J.C., Han,C., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Lykidis,A., Hemme,C., Fields,M.W., He,Z., Zhou,J. and Richardson,P. (2008) Direct submission GenBank.