ISBusp2

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AB035483 ND Burkholderia sp.
Burkholderia sp. TH2
DNA section
IS Length : 1349 bp

Ends


IR Length : 16/17

IRL : CAGGCTGTTGAAATTCGATCCCGTGTAAACGGGATCCTGGGGCCGAACGT
IRR : CAGGCTGTTGAAAATCGCCTCGTCATGAGGACCGAAGCGACGATCAGGAG

Insertion site


Left flankDirect repeatRight flankDR Length
GCTTTCGCCCTTAGGGGCAAAGCA4

DNA sequence

CAGGCTGTTGAAATTCGATCCCGTGTAAACGGGATCCTGGGGCCGAACGTTATGGATATCGTGTTCATGATCTTTGGCAGTGAATTCGATGCGCGGAATG
GATGAGATGCAGGAAGCCCTTTTTACGACGGTCAAGCTTGAGGACTTCGTTCCGGCCGATCATCCGTTGCGCCCCATACGGCTGCTGGTCAATCAGGCGT
TGAAGCGGCTCAACGGATTGTTCGGCATCATCTATGCGGACAGCGGCCGGGCCTCGATTGCACCGGAGAAACTGGTGCGTGCGCTTCTGTTGCAGGTGTT
CTACTCGGTGCGCAGCGAGCGCATGCTGATGGAGCAGATGCAGTACAACCTGCTGTTCCGCTGGTTCGTTGGACTGGCCATCGAGGACACTGTCTGGAAC
CACTCCGTCTTCTCGAAGAACCGTGACCGGCTGCTCGAGCATGAGGTCATCGAGTCGTTCTTCACGGAAGTGATGACTTTGGCCGACAGGCAGGGTCTGC
TGTCCCACGAGCATTTCTCGGTGGACGGCACGCTCATCCAGGCATGGGCGAGTCACAAGAGTTTTCGTCGCAAGGACGGATCGGACGATCCGCCAGTCGG
CGGCGGGCGCAATGCAGAGGCTGACTGGAAAGGCGAGCGGCGTAGTAATGAGACGCATGAGTCGAGCACTGATGCAGATGCGCGCCTGTTCAAGAAGAGC
AAGCAAAGCCCGGCCATCCTCTGTTACCAGGGGCATATCCTGATGGAGAACCGCTCCGGGCTGGTGGTCGGCGCCGTGGCAAGCCATGCAGATGGTTTTG
GCGAGCGGGCCAGTGCGCTGCGACTGCTCGACTGCGTGCCGGGCACTCACGCGAAGACGGTCGGTGCCGACAAGGCGTACGACACGCATGATTTCGTAAA
CGATTGCCGGGCGCGCAACATAACCCCGCATGTCGCACGCAACGACGCCCGCCAGGGCGGCAGCGCGATCGATGACCGTACATCGCGGCACGCGGGATAC
CAGATGAGTCAGGTCATCCGCAAGCGTATCGAGGAGCATTTCGGATGGGGCAAGACGGTCGGTCGGATCCGGCAGACGGTGTATCGCGGCATCAAGCGGG
TCGACCAGCACTTCAAGCTGACAATGGTCGCGAGCAATCTCACGCGCATGGCGCGAATAATGGACGCGGTGCACGCGGGATCGGTGCGATGAGCCGCCGA
TGCGCGCGGCCTGCGAGGCCTGGCACCCCCGCGCAGGCGCGTTGCCTGCGCAAACTGATCGGCGCATCCGAATTTCAATTGGATATTGCACGCGAAACAC
TCCTGATCGTCGCTTCGGTCCTCATGACGAGGCGATTTTCAACAGCCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1104 bp1104 aa891192+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MRGMDEMQEALFTTVKLEDFVPADHPLRPIRLLVNQALKRLNGLFGIIYADSGRASIAPEKLVRALLLQVFYSVRSERMLMEQMQYNLLFRWFVGLAIED
TVWNHSVFSKNRDRLLEHEVIESFFTEVMTLADRQGLLSHEHFSVDGTLIQAWASHKSFRRKDGSDDPPVGGGRNAEADWKGERRSNETHESSTDADARL
FKKSKQSPAILCYQGHILMENRSGLVVGAVASHADGFGERASALRLLDCVPGTHAKTVGADKAYDTHDFVNDCRARNITPHVARNDARQGGSAIDDRTSR
HAGYQMSQVIRKRIEEHFGWGKTVGRIRQTVYRGIKRVDQHFKLTMVASNLTRMARIMDAVHAGSVR

 

Blast result :
Comments
ISBusp2 is 73% aa similar to ISPa8.
TnpA of ISBusp2 is 54% identical with the transposase of ISRaleut2 from Wautersia metallidurans CH34 (AF236817). The sequence of ISBusp2 in AB035483 is complementary in relation to the tnpA gene.
References
1] Suzuki, K., Ichimura, A., Ogawa, N., Hasebe, A. and Miyashita, K. (2002) J. Bacteriol. 184, 5714-5722