ISBusp2
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AB035483 | ND | Burkholderia sp. | Burkholderia sp. TH2 |
DNA section
IS Length : 1349 bp
Ends
IR Length : 16/17
IRL : CAGGCTGTTGAAATTCGATCCCGTGTAAACGGGATCCTGGGGCCGAACGT
IRR : CAGGCTGTTGAAAATCGCCTCGTCATGAGGACCGAAGCGACGATCAGGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCTTTCGCCC | TTAG | GGGCAAAGCA | 4 |
DNA sequence
CAGGCTGTTGAAATTCGATCCCGTGTAAACGGGATCCTGGGGCCGAACGTTATGGATATCGTGTTCATGATCTTTGGCAGTGAATTCGATGCGCGGAATG
GATGAGATGCAGGAAGCCCTTTTTACGACGGTCAAGCTTGAGGACTTCGTTCCGGCCGATCATCCGTTGCGCCCCATACGGCTGCTGGTCAATCAGGCGT
TGAAGCGGCTCAACGGATTGTTCGGCATCATCTATGCGGACAGCGGCCGGGCCTCGATTGCACCGGAGAAACTGGTGCGTGCGCTTCTGTTGCAGGTGTT
CTACTCGGTGCGCAGCGAGCGCATGCTGATGGAGCAGATGCAGTACAACCTGCTGTTCCGCTGGTTCGTTGGACTGGCCATCGAGGACACTGTCTGGAAC
CACTCCGTCTTCTCGAAGAACCGTGACCGGCTGCTCGAGCATGAGGTCATCGAGTCGTTCTTCACGGAAGTGATGACTTTGGCCGACAGGCAGGGTCTGC
TGTCCCACGAGCATTTCTCGGTGGACGGCACGCTCATCCAGGCATGGGCGAGTCACAAGAGTTTTCGTCGCAAGGACGGATCGGACGATCCGCCAGTCGG
CGGCGGGCGCAATGCAGAGGCTGACTGGAAAGGCGAGCGGCGTAGTAATGAGACGCATGAGTCGAGCACTGATGCAGATGCGCGCCTGTTCAAGAAGAGC
AAGCAAAGCCCGGCCATCCTCTGTTACCAGGGGCATATCCTGATGGAGAACCGCTCCGGGCTGGTGGTCGGCGCCGTGGCAAGCCATGCAGATGGTTTTG
GCGAGCGGGCCAGTGCGCTGCGACTGCTCGACTGCGTGCCGGGCACTCACGCGAAGACGGTCGGTGCCGACAAGGCGTACGACACGCATGATTTCGTAAA
CGATTGCCGGGCGCGCAACATAACCCCGCATGTCGCACGCAACGACGCCCGCCAGGGCGGCAGCGCGATCGATGACCGTACATCGCGGCACGCGGGATAC
CAGATGAGTCAGGTCATCCGCAAGCGTATCGAGGAGCATTTCGGATGGGGCAAGACGGTCGGTCGGATCCGGCAGACGGTGTATCGCGGCATCAAGCGGG
TCGACCAGCACTTCAAGCTGACAATGGTCGCGAGCAATCTCACGCGCATGGCGCGAATAATGGACGCGGTGCACGCGGGATCGGTGCGATGAGCCGCCGA
TGCGCGCGGCCTGCGAGGCCTGGCACCCCCGCGCAGGCGCGTTGCCTGCGCAAACTGATCGGCGCATCCGAATTTCAATTGGATATTGCACGCGAAACAC
TCCTGATCGTCGCTTCGGTCCTCATGACGAGGCGATTTTCAACAGCCTG
GATGAGATGCAGGAAGCCCTTTTTACGACGGTCAAGCTTGAGGACTTCGTTCCGGCCGATCATCCGTTGCGCCCCATACGGCTGCTGGTCAATCAGGCGT
TGAAGCGGCTCAACGGATTGTTCGGCATCATCTATGCGGACAGCGGCCGGGCCTCGATTGCACCGGAGAAACTGGTGCGTGCGCTTCTGTTGCAGGTGTT
CTACTCGGTGCGCAGCGAGCGCATGCTGATGGAGCAGATGCAGTACAACCTGCTGTTCCGCTGGTTCGTTGGACTGGCCATCGAGGACACTGTCTGGAAC
CACTCCGTCTTCTCGAAGAACCGTGACCGGCTGCTCGAGCATGAGGTCATCGAGTCGTTCTTCACGGAAGTGATGACTTTGGCCGACAGGCAGGGTCTGC
TGTCCCACGAGCATTTCTCGGTGGACGGCACGCTCATCCAGGCATGGGCGAGTCACAAGAGTTTTCGTCGCAAGGACGGATCGGACGATCCGCCAGTCGG
CGGCGGGCGCAATGCAGAGGCTGACTGGAAAGGCGAGCGGCGTAGTAATGAGACGCATGAGTCGAGCACTGATGCAGATGCGCGCCTGTTCAAGAAGAGC
AAGCAAAGCCCGGCCATCCTCTGTTACCAGGGGCATATCCTGATGGAGAACCGCTCCGGGCTGGTGGTCGGCGCCGTGGCAAGCCATGCAGATGGTTTTG
GCGAGCGGGCCAGTGCGCTGCGACTGCTCGACTGCGTGCCGGGCACTCACGCGAAGACGGTCGGTGCCGACAAGGCGTACGACACGCATGATTTCGTAAA
CGATTGCCGGGCGCGCAACATAACCCCGCATGTCGCACGCAACGACGCCCGCCAGGGCGGCAGCGCGATCGATGACCGTACATCGCGGCACGCGGGATAC
CAGATGAGTCAGGTCATCCGCAAGCGTATCGAGGAGCATTTCGGATGGGGCAAGACGGTCGGTCGGATCCGGCAGACGGTGTATCGCGGCATCAAGCGGG
TCGACCAGCACTTCAAGCTGACAATGGTCGCGAGCAATCTCACGCGCATGGCGCGAATAATGGACGCGGTGCACGCGGGATCGGTGCGATGAGCCGCCGA
TGCGCGCGGCCTGCGAGGCCTGGCACCCCCGCGCAGGCGCGTTGCCTGCGCAAACTGATCGGCGCATCCGAATTTCAATTGGATATTGCACGCGAAACAC
TCCTGATCGTCGCTTCGGTCCTCATGACGAGGCGATTTTCAACAGCCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1104 bp | 1104 aa | 89 | 1192 | + | No |
Chemistry : DDE
ORF sequence :
MRGMDEMQEALFTTVKLEDFVPADHPLRPIRLLVNQALKRLNGLFGIIYADSGRASIAPEKLVRALLLQVFYSVRSERMLMEQMQYNLLFRWFVGLAIED
TVWNHSVFSKNRDRLLEHEVIESFFTEVMTLADRQGLLSHEHFSVDGTLIQAWASHKSFRRKDGSDDPPVGGGRNAEADWKGERRSNETHESSTDADARL
FKKSKQSPAILCYQGHILMENRSGLVVGAVASHADGFGERASALRLLDCVPGTHAKTVGADKAYDTHDFVNDCRARNITPHVARNDARQGGSAIDDRTSR
HAGYQMSQVIRKRIEEHFGWGKTVGRIRQTVYRGIKRVDQHFKLTMVASNLTRMARIMDAVHAGSVR
TVWNHSVFSKNRDRLLEHEVIESFFTEVMTLADRQGLLSHEHFSVDGTLIQAWASHKSFRRKDGSDDPPVGGGRNAEADWKGERRSNETHESSTDADARL
FKKSKQSPAILCYQGHILMENRSGLVVGAVASHADGFGERASALRLLDCVPGTHAKTVGADKAYDTHDFVNDCRARNITPHVARNDARQGGSAIDDRTSR
HAGYQMSQVIRKRIEEHFGWGKTVGRIRQTVYRGIKRVDQHFKLTMVASNLTRMARIMDAVHAGSVR
Blast result :
Comments
ISBusp2 is 73% aa similar to ISPa8.
TnpA of ISBusp2 is 54% identical with the transposase of ISRaleut2 from Wautersia metallidurans CH34 (AF236817). The sequence of ISBusp2 in AB035483 is complementary in relation to the tnpA gene.
TnpA of ISBusp2 is 54% identical with the transposase of ISRaleut2 from Wautersia metallidurans CH34 (AF236817). The sequence of ISBusp2 in AB035483 is complementary in relation to the tnpA gene.
References
1] Suzuki, K., Ichimura, A., Ogawa, N., Hasebe, A. and Miyashita, K. (2002) J. Bacteriol. 184, 5714-5722