ISGob3

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABGO00000000 ND Gemmata obscuriglobus
Gemmata obscuriglobus UQM 2246
DNA section
IS Length : 1597 bp

Ends


IR Length : 11/12

IRL : GTAACCGTTCACGGGGTGCGGGCCGTGCATTTTCCAGGCCTTTGTGACTC
IRR : GTAAGCGTTCACAGTTGATGCGGGTGTATCTCAACAGCCAGCGAAAGTTG

Insertion site


Left flankDirect repeatRight flankDR Length
TGTCGATGCCGACACGTCGACCGTCGCG8
ACGAGGGTTTGGTTTTTCGTTTACAGTT8
AGAAATACCTAATCTTTTCTTTGGCTTC8
GGTGGAGAAGGAGTTGGGAGCGGCGCTG8
GCGGGTGACGGACGCGGGTGTGAAGGAG8
AGTTTCAATACCACACGGTGGCATAAAT8
TGCCTCTACTTGCACTTCGTTAGTAACG8
CACCTCAACACGCATCGCAACCTCTTAC8

DNA sequence

GTAACCGTTCACGGGGTGCGGGCCGTGCATTTTCCAGGCCTTTGTGACTCGATTCTGCGCGGGGTTGCCTCAAGAGCCGGTGTTCCGTAATCGAACGGAC
GCGATGACATCTGTTCCTCAACCGCCGGAGCTACCGAGTGACCTGCCGCCAGCGGTGGTGGCGTACATTCGTGCGCTGGAAGCGACGGTTGCGCAGTTGC
AGGCCACGGTCGCGGCTCTCCAGGTCACGGTGGCCGACCTTCAGACCCGGCTCAACCAGAATTCCAGCAACTCGTCGAAACCGCCCTCGTCGGATGGTCC
GCAGGTGAAGCCGGCCCCGCCCAAGAGTCCCTCGGGGAAGCGGCGCGGCGGTCAATCGGGGCACCCCAAGGCCGAGCGCACCGTGCTGCCGCCCGACACG
GTCCACACCCTCAAACCGGACACCTGCCGCGGGTGTGCGTGCCCACTCACCGGGGACGACCCGAACCCGTCGATTCACCAGGTGCATGAGATCCCGGTCG
TCCGGCCGCAGGTGACCGAGTATCGGTGCCATCGGCTCCGGTGCCCGCACTGCGGCGCCGTGACGACCGCACCGGTGCCCGCCGACGCGGCTCCCGGGTA
CGGTCCCCGGGTCCAGGCGGTGGCCGCCATGCTCACCGGTTCGTGCCGCCTGGGCAAGCGGGTGGTGAGCCAACTGTTCGACGACCTGTTCGGGTTGCCC
ATCCGTCCGGCCACGGTGTGCAAACTCCAGCACACGACCGCGGCGGCTCTGGCCCCGGTGGCCGAAGCGGCTCTCGCGTACACCCGCGGGCACCCGGCGA
ACGTGGACGAAACGGGCTGGACGCAAGGGCGCCAGCGGGCCTGGTTGTGGGTCGCGGTGAGCACCTCGGTGGTCGCATTCCTGATCCGCGCCACCCGGGG
CCGGAGCGCGTTCGACGACCTGCGGGACGGGTCCGCCCAGGTCCACACGACCGATCGGTATCCGGTGTACACGCATCTGCCGGTGCATCGGCGCCAGGTG
TGCTGGGCGCACCTGCGGCGGGACTTCCAGGCGATGATCGATCGGGGCAACGACGGATCCCCGATCGGGGCCGCCCTGTTGGCCTGTTCCGACGAACTGT
TCGGGCACTGGTTCCGGGTGCGGGACGGGACGTTAGCCCGGTCCACGTTCGCTCGCGTGTACGCCCGCGCCGTGCGGGCCCGGTTCCGCACGCACCTGGG
GCACGGGGGCCGGTGCGGGTGCCCCAAGACCGGGGCCGTGTGCCGCGAGCTGTTGGCGGTGGAGCCGGCCCTGTGGACGTTCGCACGCGTGGGCGGGGTG
GAACCGACCAACAACGCGGCCGAGCGGGCCCTGCGTCACGCCGTGTGCTGGCGCAAGACCAGCTACGGCACCGACTCCGAACGCGGTAGCCGGTTCGTGG
AGCGGATCCTCACGGTCCTGGCCTCGTGTCGCCGGCAGGGCCGCAACGTGCTCGCATTCCTCACCGACGCCGTCACCGCACACCGTACCGGGGCAAAGCC
ACCAACACTGATCCCGGTCCCGGCTCAACAACCACCGATGATGAACCCAACTTTCGCTGGCTGTTGAGATACACCCGCATCAACTGTGAACGCTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1464 bp487 aa1041567+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTSVPQPPELPSDLPPAVVAYIRALEATVAQLQATVAALQVTVADLQTRLNQNSSNSSKPPSSDGPQVKPAPPKSPSGKRRGGQSGHPKAERTVLPPDTV
HTLKPDTCRGCACPLTGDDPNPSIHQVHEIPVVRPQVTEYRCHRLRCPHCGAVTTAPVPADAAPGYGPRVQAVAAMLTGSCRLGKRVVSQLFDDLFGLPI
RPATVCKLQHTTAAALAPVAEAALAYTRGHPANVDETGWTQGRQRAWLWVAVSTSVVAFLIRATRGRSAFDDLRDGSAQVHTTDRYPVYTHLPVHRRQVC
WAHLRRDFQAMIDRGNDGSPIGAALLACSDELFGHWFRVRDGTLARSTFARVYARAVRARFRTHLGHGGRCGCPKTGAVCRELLAVEPALWTFARVGGVE
PTNNAAERALRHAVCWRKTSYGTDSERGSRFVERILTVLASCRRQGRNVLAFLTDAVTAHRTGAKPPTLIPVPAQQPPMMNPTFAGC

 

Blast result :
Comments
ISGob3 is 85% aa similar to ISGob1.
References
1] ISfinder annotation (2008).
2] Ward,N. (2007) Direct Submission GenBank.