ISGob3
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABGO00000000 | ND | Gemmata obscuriglobus | Gemmata obscuriglobus UQM 2246 |
DNA section
IS Length : 1597 bp
Ends
IR Length : 11/12
IRL : GTAACCGTTCACGGGGTGCGGGCCGTGCATTTTCCAGGCCTTTGTGACTC
IRR : GTAAGCGTTCACAGTTGATGCGGGTGTATCTCAACAGCCAGCGAAAGTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGTCGATGCC | GACACGTC | GACCGTCGCG | 8 |
ACGAGGGTTT | GGTTTTTC | GTTTACAGTT | 8 |
AGAAATACCT | AATCTTTT | CTTTGGCTTC | 8 |
GGTGGAGAAG | GAGTTGGG | AGCGGCGCTG | 8 |
GCGGGTGACG | GACGCGGG | TGTGAAGGAG | 8 |
AGTTTCAATA | CCACACGG | TGGCATAAAT | 8 |
TGCCTCTACT | TGCACTTC | GTTAGTAACG | 8 |
CACCTCAACA | CGCATCGC | AACCTCTTAC | 8 |
DNA sequence
GTAACCGTTCACGGGGTGCGGGCCGTGCATTTTCCAGGCCTTTGTGACTCGATTCTGCGCGGGGTTGCCTCAAGAGCCGGTGTTCCGTAATCGAACGGAC
GCGATGACATCTGTTCCTCAACCGCCGGAGCTACCGAGTGACCTGCCGCCAGCGGTGGTGGCGTACATTCGTGCGCTGGAAGCGACGGTTGCGCAGTTGC
AGGCCACGGTCGCGGCTCTCCAGGTCACGGTGGCCGACCTTCAGACCCGGCTCAACCAGAATTCCAGCAACTCGTCGAAACCGCCCTCGTCGGATGGTCC
GCAGGTGAAGCCGGCCCCGCCCAAGAGTCCCTCGGGGAAGCGGCGCGGCGGTCAATCGGGGCACCCCAAGGCCGAGCGCACCGTGCTGCCGCCCGACACG
GTCCACACCCTCAAACCGGACACCTGCCGCGGGTGTGCGTGCCCACTCACCGGGGACGACCCGAACCCGTCGATTCACCAGGTGCATGAGATCCCGGTCG
TCCGGCCGCAGGTGACCGAGTATCGGTGCCATCGGCTCCGGTGCCCGCACTGCGGCGCCGTGACGACCGCACCGGTGCCCGCCGACGCGGCTCCCGGGTA
CGGTCCCCGGGTCCAGGCGGTGGCCGCCATGCTCACCGGTTCGTGCCGCCTGGGCAAGCGGGTGGTGAGCCAACTGTTCGACGACCTGTTCGGGTTGCCC
ATCCGTCCGGCCACGGTGTGCAAACTCCAGCACACGACCGCGGCGGCTCTGGCCCCGGTGGCCGAAGCGGCTCTCGCGTACACCCGCGGGCACCCGGCGA
ACGTGGACGAAACGGGCTGGACGCAAGGGCGCCAGCGGGCCTGGTTGTGGGTCGCGGTGAGCACCTCGGTGGTCGCATTCCTGATCCGCGCCACCCGGGG
CCGGAGCGCGTTCGACGACCTGCGGGACGGGTCCGCCCAGGTCCACACGACCGATCGGTATCCGGTGTACACGCATCTGCCGGTGCATCGGCGCCAGGTG
TGCTGGGCGCACCTGCGGCGGGACTTCCAGGCGATGATCGATCGGGGCAACGACGGATCCCCGATCGGGGCCGCCCTGTTGGCCTGTTCCGACGAACTGT
TCGGGCACTGGTTCCGGGTGCGGGACGGGACGTTAGCCCGGTCCACGTTCGCTCGCGTGTACGCCCGCGCCGTGCGGGCCCGGTTCCGCACGCACCTGGG
GCACGGGGGCCGGTGCGGGTGCCCCAAGACCGGGGCCGTGTGCCGCGAGCTGTTGGCGGTGGAGCCGGCCCTGTGGACGTTCGCACGCGTGGGCGGGGTG
GAACCGACCAACAACGCGGCCGAGCGGGCCCTGCGTCACGCCGTGTGCTGGCGCAAGACCAGCTACGGCACCGACTCCGAACGCGGTAGCCGGTTCGTGG
AGCGGATCCTCACGGTCCTGGCCTCGTGTCGCCGGCAGGGCCGCAACGTGCTCGCATTCCTCACCGACGCCGTCACCGCACACCGTACCGGGGCAAAGCC
ACCAACACTGATCCCGGTCCCGGCTCAACAACCACCGATGATGAACCCAACTTTCGCTGGCTGTTGAGATACACCCGCATCAACTGTGAACGCTTAC
GCGATGACATCTGTTCCTCAACCGCCGGAGCTACCGAGTGACCTGCCGCCAGCGGTGGTGGCGTACATTCGTGCGCTGGAAGCGACGGTTGCGCAGTTGC
AGGCCACGGTCGCGGCTCTCCAGGTCACGGTGGCCGACCTTCAGACCCGGCTCAACCAGAATTCCAGCAACTCGTCGAAACCGCCCTCGTCGGATGGTCC
GCAGGTGAAGCCGGCCCCGCCCAAGAGTCCCTCGGGGAAGCGGCGCGGCGGTCAATCGGGGCACCCCAAGGCCGAGCGCACCGTGCTGCCGCCCGACACG
GTCCACACCCTCAAACCGGACACCTGCCGCGGGTGTGCGTGCCCACTCACCGGGGACGACCCGAACCCGTCGATTCACCAGGTGCATGAGATCCCGGTCG
TCCGGCCGCAGGTGACCGAGTATCGGTGCCATCGGCTCCGGTGCCCGCACTGCGGCGCCGTGACGACCGCACCGGTGCCCGCCGACGCGGCTCCCGGGTA
CGGTCCCCGGGTCCAGGCGGTGGCCGCCATGCTCACCGGTTCGTGCCGCCTGGGCAAGCGGGTGGTGAGCCAACTGTTCGACGACCTGTTCGGGTTGCCC
ATCCGTCCGGCCACGGTGTGCAAACTCCAGCACACGACCGCGGCGGCTCTGGCCCCGGTGGCCGAAGCGGCTCTCGCGTACACCCGCGGGCACCCGGCGA
ACGTGGACGAAACGGGCTGGACGCAAGGGCGCCAGCGGGCCTGGTTGTGGGTCGCGGTGAGCACCTCGGTGGTCGCATTCCTGATCCGCGCCACCCGGGG
CCGGAGCGCGTTCGACGACCTGCGGGACGGGTCCGCCCAGGTCCACACGACCGATCGGTATCCGGTGTACACGCATCTGCCGGTGCATCGGCGCCAGGTG
TGCTGGGCGCACCTGCGGCGGGACTTCCAGGCGATGATCGATCGGGGCAACGACGGATCCCCGATCGGGGCCGCCCTGTTGGCCTGTTCCGACGAACTGT
TCGGGCACTGGTTCCGGGTGCGGGACGGGACGTTAGCCCGGTCCACGTTCGCTCGCGTGTACGCCCGCGCCGTGCGGGCCCGGTTCCGCACGCACCTGGG
GCACGGGGGCCGGTGCGGGTGCCCCAAGACCGGGGCCGTGTGCCGCGAGCTGTTGGCGGTGGAGCCGGCCCTGTGGACGTTCGCACGCGTGGGCGGGGTG
GAACCGACCAACAACGCGGCCGAGCGGGCCCTGCGTCACGCCGTGTGCTGGCGCAAGACCAGCTACGGCACCGACTCCGAACGCGGTAGCCGGTTCGTGG
AGCGGATCCTCACGGTCCTGGCCTCGTGTCGCCGGCAGGGCCGCAACGTGCTCGCATTCCTCACCGACGCCGTCACCGCACACCGTACCGGGGCAAAGCC
ACCAACACTGATCCCGGTCCCGGCTCAACAACCACCGATGATGAACCCAACTTTCGCTGGCTGTTGAGATACACCCGCATCAACTGTGAACGCTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1464 bp | 487 aa | 104 | 1567 | + | No |
Chemistry : DDE
ORF sequence :
MTSVPQPPELPSDLPPAVVAYIRALEATVAQLQATVAALQVTVADLQTRLNQNSSNSSKPPSSDGPQVKPAPPKSPSGKRRGGQSGHPKAERTVLPPDTV
HTLKPDTCRGCACPLTGDDPNPSIHQVHEIPVVRPQVTEYRCHRLRCPHCGAVTTAPVPADAAPGYGPRVQAVAAMLTGSCRLGKRVVSQLFDDLFGLPI
RPATVCKLQHTTAAALAPVAEAALAYTRGHPANVDETGWTQGRQRAWLWVAVSTSVVAFLIRATRGRSAFDDLRDGSAQVHTTDRYPVYTHLPVHRRQVC
WAHLRRDFQAMIDRGNDGSPIGAALLACSDELFGHWFRVRDGTLARSTFARVYARAVRARFRTHLGHGGRCGCPKTGAVCRELLAVEPALWTFARVGGVE
PTNNAAERALRHAVCWRKTSYGTDSERGSRFVERILTVLASCRRQGRNVLAFLTDAVTAHRTGAKPPTLIPVPAQQPPMMNPTFAGC
HTLKPDTCRGCACPLTGDDPNPSIHQVHEIPVVRPQVTEYRCHRLRCPHCGAVTTAPVPADAAPGYGPRVQAVAAMLTGSCRLGKRVVSQLFDDLFGLPI
RPATVCKLQHTTAAALAPVAEAALAYTRGHPANVDETGWTQGRQRAWLWVAVSTSVVAFLIRATRGRSAFDDLRDGSAQVHTTDRYPVYTHLPVHRRQVC
WAHLRRDFQAMIDRGNDGSPIGAALLACSDELFGHWFRVRDGTLARSTFARVYARAVRARFRTHLGHGGRCGCPKTGAVCRELLAVEPALWTFARVGGVE
PTNNAAERALRHAVCWRKTSYGTDSERGSRFVERILTVLASCRRQGRNVLAFLTDAVTAHRTGAKPPTLIPVPAQQPPMMNPTFAGC
Blast result :
Comments
ISGob3 is 85% aa similar to ISGob1.
References
1] ISfinder annotation (2008).
2] Ward,N. (2007) Direct Submission GenBank.
2] Ward,N. (2007) Direct Submission GenBank.