ISLla2

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009004 ND Lactococcus lactis
Lactococcus lactis subsp. cremoris MG1363
DNA section
IS Length : 998 bp

Ends


IR Length : 21/27

IRL : ATCAGAATTCTAGTTGATTTCATTGAAAAATATATAAGTCGTGCTATCCT
IRR : ACCCGAATTGCTAGTTGATTATTTAGCCATGACTTGATACCCGATAGAAT

Insertion site


Left flankDirect repeatRight flankDR Length
TATCTAGTATGGAGCTATAC0

DNA sequence

ATCAGAATTCTAGTTGATTTCATTGAAAAATATATAAGTCGTGCTATCCTAATCTTAAACCACTAAGCATTAGAAAGCGCACGACCTATATGACTTATAA
TAGCACACTTACAAAAGTTTTTGTTTATTTACTGATAAGCATTGAAGCGATTTATCAAACAAGCGTTCCACTCGAAATACAAAATCGGAAGAACGTCCAT
CTCGCAACATCAGATTGCTTAGTTATCGCTTGTTACCTATGGGGGGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAACTTGCTCAAAGTTTAT
TTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGA
AGGAATTAGTGTATCCATTATTGACAGCTTCCCCATTCCTTTATGTCAGCCGATTCGTAACTTCAGAAGCAAAGTTCTTGGAGATTATGCAAATGTTGGC
TACAATGCTACAAAGGGACAGTACTTCTATGGATGTAAATGTCATGCTTTAGTCAGTGAATCAGGCTATGTCATAGACTACACAATTACTCCTGCTTCAA
TGGCTGATAGTTCAATGGCCAAGGAAGTATTGTCTCAATTTGGCACACCCATAGTCCTTGGAGATATGGGCTATTTAGGTCAAGTGCTTCATGACAGGCT
TGAACTCAAAGAAATTGAACTGATTACACCCGTCAGAATGAACATGAAGAAAAAGGACATAACTTTTCCTATTTTTTCAAAACGTCGAAAAGTCATTGAA
CGCGTATTCTCTTTTCTGACAAACCTCGGAGCTGAACGCTGTAAAAATCGTTCGCCTCAAGGTTTTCAATTGAAATTAGAGATGATACTTTTAGCGTATT
CTTTACTGTTAAAATCAGCTAAATCACTGGAACCAGAGACTTTAAGATATTCTATCGGGTATCAAGTCATGGCTAAATAATCAACTAGCAATTCGGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
891 bp296 aa90980+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTYNSTLTKVFVYLLISIEAIYQTSVPLEIQNRKNVHLATSDCLVIACYLWGVLHFSETLKAKHQLAQSLFPNFLEYSRFVRRCNALLPSIQVIRQALVF
KEVEGISVSIIDSFPIPLCQPIRNFRSKVLGDYANVGYNATKGQYFYGCKCHALVSESGYVIDYTITPASMADSSMAKEVLSQFGTPIVLGDMGYLGQVL
HDRLELKEIELITPVRMNMKKKDITFPIFSKRRKVIERVFSFLTNLGAERCKNRSPQGFQLKLEMILLAYSLLLKSAKSLEPETLRYSIGYQVMAK

 

Blast result :
Comments
ISLla2 is 95% aa similar to IS982B.
References
1] Wegmann,U., O'connell-Motherway,M., Zomer,A., Buist,G., Shearman,C., Canchaya,C., Ventura,M., Goesmann,A., Gasson,M.J., Kuipers,O.P., van Sinderen,D. and Kok,J. (2007) J. Bacteriol. 189 (8), 3256-3270.
2] Wegmann,U. and Linke,B. (2006) Direct Submission genBank.