ISLla2
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009004 | ND | Lactococcus lactis | Lactococcus lactis subsp. cremoris MG1363 |
DNA section
IS Length : 998 bp
Ends
IR Length : 21/27
IRL : ATCAGAATTCTAGTTGATTTCATTGAAAAATATATAAGTCGTGCTATCCT
IRR : ACCCGAATTGCTAGTTGATTATTTAGCCATGACTTGATACCCGATAGAAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATCTAGTAT | GGAGCTATAC | 0 |
DNA sequence
ATCAGAATTCTAGTTGATTTCATTGAAAAATATATAAGTCGTGCTATCCTAATCTTAAACCACTAAGCATTAGAAAGCGCACGACCTATATGACTTATAA
TAGCACACTTACAAAAGTTTTTGTTTATTTACTGATAAGCATTGAAGCGATTTATCAAACAAGCGTTCCACTCGAAATACAAAATCGGAAGAACGTCCAT
CTCGCAACATCAGATTGCTTAGTTATCGCTTGTTACCTATGGGGGGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAACTTGCTCAAAGTTTAT
TTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGA
AGGAATTAGTGTATCCATTATTGACAGCTTCCCCATTCCTTTATGTCAGCCGATTCGTAACTTCAGAAGCAAAGTTCTTGGAGATTATGCAAATGTTGGC
TACAATGCTACAAAGGGACAGTACTTCTATGGATGTAAATGTCATGCTTTAGTCAGTGAATCAGGCTATGTCATAGACTACACAATTACTCCTGCTTCAA
TGGCTGATAGTTCAATGGCCAAGGAAGTATTGTCTCAATTTGGCACACCCATAGTCCTTGGAGATATGGGCTATTTAGGTCAAGTGCTTCATGACAGGCT
TGAACTCAAAGAAATTGAACTGATTACACCCGTCAGAATGAACATGAAGAAAAAGGACATAACTTTTCCTATTTTTTCAAAACGTCGAAAAGTCATTGAA
CGCGTATTCTCTTTTCTGACAAACCTCGGAGCTGAACGCTGTAAAAATCGTTCGCCTCAAGGTTTTCAATTGAAATTAGAGATGATACTTTTAGCGTATT
CTTTACTGTTAAAATCAGCTAAATCACTGGAACCAGAGACTTTAAGATATTCTATCGGGTATCAAGTCATGGCTAAATAATCAACTAGCAATTCGGGT
TAGCACACTTACAAAAGTTTTTGTTTATTTACTGATAAGCATTGAAGCGATTTATCAAACAAGCGTTCCACTCGAAATACAAAATCGGAAGAACGTCCAT
CTCGCAACATCAGATTGCTTAGTTATCGCTTGTTACCTATGGGGGGTACTGCATTTTAGTGAAACGCTTAAAGCTAAGCACCAACTTGCTCAAAGTTTAT
TTCCTAATTTCCTAGAATATTCTCGCTTTGTCCGCCGTTGTAATGCCCTCTTACCGAGTATCCAAGTCATTCGCCAAGCACTCGTCTTTAAAGAGGTTGA
AGGAATTAGTGTATCCATTATTGACAGCTTCCCCATTCCTTTATGTCAGCCGATTCGTAACTTCAGAAGCAAAGTTCTTGGAGATTATGCAAATGTTGGC
TACAATGCTACAAAGGGACAGTACTTCTATGGATGTAAATGTCATGCTTTAGTCAGTGAATCAGGCTATGTCATAGACTACACAATTACTCCTGCTTCAA
TGGCTGATAGTTCAATGGCCAAGGAAGTATTGTCTCAATTTGGCACACCCATAGTCCTTGGAGATATGGGCTATTTAGGTCAAGTGCTTCATGACAGGCT
TGAACTCAAAGAAATTGAACTGATTACACCCGTCAGAATGAACATGAAGAAAAAGGACATAACTTTTCCTATTTTTTCAAAACGTCGAAAAGTCATTGAA
CGCGTATTCTCTTTTCTGACAAACCTCGGAGCTGAACGCTGTAAAAATCGTTCGCCTCAAGGTTTTCAATTGAAATTAGAGATGATACTTTTAGCGTATT
CTTTACTGTTAAAATCAGCTAAATCACTGGAACCAGAGACTTTAAGATATTCTATCGGGTATCAAGTCATGGCTAAATAATCAACTAGCAATTCGGGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
891 bp | 296 aa | 90 | 980 | + | No |
Chemistry : DDE
ORF sequence :
MTYNSTLTKVFVYLLISIEAIYQTSVPLEIQNRKNVHLATSDCLVIACYLWGVLHFSETLKAKHQLAQSLFPNFLEYSRFVRRCNALLPSIQVIRQALVF
KEVEGISVSIIDSFPIPLCQPIRNFRSKVLGDYANVGYNATKGQYFYGCKCHALVSESGYVIDYTITPASMADSSMAKEVLSQFGTPIVLGDMGYLGQVL
HDRLELKEIELITPVRMNMKKKDITFPIFSKRRKVIERVFSFLTNLGAERCKNRSPQGFQLKLEMILLAYSLLLKSAKSLEPETLRYSIGYQVMAK
KEVEGISVSIIDSFPIPLCQPIRNFRSKVLGDYANVGYNATKGQYFYGCKCHALVSESGYVIDYTITPASMADSSMAKEVLSQFGTPIVLGDMGYLGQVL
HDRLELKEIELITPVRMNMKKKDITFPIFSKRRKVIERVFSFLTNLGAERCKNRSPQGFQLKLEMILLAYSLLLKSAKSLEPETLRYSIGYQVMAK
Blast result :
Comments
ISLla2 is 95% aa similar to IS982B.
References
1] Wegmann,U., O'connell-Motherway,M., Zomer,A., Buist,G., Shearman,C., Canchaya,C., Ventura,M., Goesmann,A., Gasson,M.J., Kuipers,O.P., van Sinderen,D. and Kok,J. (2007) J. Bacteriol. 189 (8), 3256-3270.
2] Wegmann,U. and Linke,B. (2006) Direct Submission genBank.
2] Wegmann,U. and Linke,B. (2006) Direct Submission genBank.