ISLhe7
- Family IS982
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_010080 | ND | Lactobacillus helveticus | Lactobacillus helveticus DPC 4571 |
DNA section
IS Length : 965 bp
Ends
IR Length : 27/28
IRL : ACGCGTGGTGCTAGTTAAATCGTTTTAGTTAAATAAAAAGTCCAATCTTG
IRR : ACGCGTGGTGCTAGTTAAATCGTTCTAGACAATATGCCATATTATAAGCT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TATATTTTAA | ATTTAATT | AAAAAAATGC | 8 |
| TTTGAAAGAG | CTTTTATT | ATAGCATGTA | 8 |
| GCAAATTTTA | ATTTAAAT | ACTTTATCTA | 8 |
DNA sequence
ACGCGTGGTGCTAGTTAAATCGTTTTAGTTAAATAAAAAGTCCAATCTTGTTAGACTTGACTTGTAAATAGTAATAATAGAAAAGAGTCTGACTAGATTG
AACTGTCTTAAGCTTAAGCGTTTTTCTCATCATTTACAAGTTAGTTTTACCCGTTTAAACAATATTTGTCGTTCTTGGTATAAGCTGTATGCTCCGAGCT
CCCTTAAGCATCGCAGAAATACAGATCAGATCAAGCTATCTGATAGTTCCATCTTAGCTATGCTTATCTGGCAAGCGGAATTAGGGATTGAATCACAAAG
AAGATTTTGCAGGTTCTTTGTAGGATTATCCCATTCCCGATTTAATCGCCGAGCTCGTCAACTTTTGCTTTTAATCTATCTGATTCGTCATACTTTGAAC
CAAGAAGTGGATCTTTCAGGTAAAATTCTGATTATTGATAGTTTCCCAGTTCCGGTCTGCCAACCTGTTCGTAATTATCGCGTCAAAATCTTTCATGATA
TTGCCGATATTGGTTATAAGGCGACTAAAAAAGTCTACTATTATGGGTTCAAGGTTCACGCAATAGTGAGCGATGATGGCTATCTGCTTGATTACGCAGT
CACTAAAGCATCGGTGCATGATGCTAAAGAAACAGTAGAATTGATGAATAATGCCCATCCTACTAATCATTATCTTTTAGGCGATGAAGGTTATTTAGGT
AAGGATTTAGCCGCTAAACTAAAACACATGGGCTATGTGCTTTGGACACCGTATCGTAAAAATATGCAAGGTGCTAAAAAACATAACAATCATCAACTAA
TAGCGGTCAGACGGACAATTGAGAGTGACTTTGCTTTGCTTAGTTATTACAATGCCGAAAATAATCGCGCTAGAAGTCTAGCGGGTTTTCAAGAACGCCT
AGAGGTTGCAGTGTTAGCTTATAATATGGCATATTGTCTAGAACGATTTAACTAGCACCACGCGT
AACTGTCTTAAGCTTAAGCGTTTTTCTCATCATTTACAAGTTAGTTTTACCCGTTTAAACAATATTTGTCGTTCTTGGTATAAGCTGTATGCTCCGAGCT
CCCTTAAGCATCGCAGAAATACAGATCAGATCAAGCTATCTGATAGTTCCATCTTAGCTATGCTTATCTGGCAAGCGGAATTAGGGATTGAATCACAAAG
AAGATTTTGCAGGTTCTTTGTAGGATTATCCCATTCCCGATTTAATCGCCGAGCTCGTCAACTTTTGCTTTTAATCTATCTGATTCGTCATACTTTGAAC
CAAGAAGTGGATCTTTCAGGTAAAATTCTGATTATTGATAGTTTCCCAGTTCCGGTCTGCCAACCTGTTCGTAATTATCGCGTCAAAATCTTTCATGATA
TTGCCGATATTGGTTATAAGGCGACTAAAAAAGTCTACTATTATGGGTTCAAGGTTCACGCAATAGTGAGCGATGATGGCTATCTGCTTGATTACGCAGT
CACTAAAGCATCGGTGCATGATGCTAAAGAAACAGTAGAATTGATGAATAATGCCCATCCTACTAATCATTATCTTTTAGGCGATGAAGGTTATTTAGGT
AAGGATTTAGCCGCTAAACTAAAACACATGGGCTATGTGCTTTGGACACCGTATCGTAAAAATATGCAAGGTGCTAAAAAACATAACAATCATCAACTAA
TAGCGGTCAGACGGACAATTGAGAGTGACTTTGCTTTGCTTAGTTATTACAATGCCGAAAATAATCGCGCTAGAAGTCTAGCGGGTTTTCAAGAACGCCT
AGAGGTTGCAGTGTTAGCTTATAATATGGCATATTGTCTAGAACGATTTAACTAGCACCACGCGT
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 858 bp | 285 aa | 98 | 955 | + | No |
Chemistry : DDE
ORF sequence :
LNCLKLKRFSHHLQVSFTRLNNICRSWYKLYAPSSLKHRRNTDQIKLSDSSILAMLIWQAELGIESQRRFCRFFVGLSHSRFNRRARQLLLLIYLIRHTL
NQEVDLSGKILIIDSFPVPVCQPVRNYRVKIFHDIADIGYKATKKVYYYGFKVHAIVSDDGYLLDYAVTKASVHDAKETVELMNNAHPTNHYLLGDEGYL
GKDLAAKLKHMGYVLWTPYRKNMQGAKKHNNHQLIAVRRTIESDFALLSYYNAENNRARSLAGFQERLEVAVLAYNMAYCLERFN
NQEVDLSGKILIIDSFPVPVCQPVRNYRVKIFHDIADIGYKATKKVYYYGFKVHAIVSDDGYLLDYAVTKASVHDAKETVELMNNAHPTNHYLLGDEGYL
GKDLAAKLKHMGYVLWTPYRKNMQGAKKHNNHQLIAVRRTIESDFALLSYYNAENNRARSLAGFQERLEVAVLAYNMAYCLERFN
Blast result :
Comments
ISLhe7 is 94% aa similar to ISLhe5.
References
1] Callanan,M., Kaleta,P., O'Callaghan,J., O'Sullivan,O., Jordan,K., McAuliffe,O., Sangrador-Vegas,A., Slattery,L., Fitzgerald,G.F., Beresford,T. and Ross,R.P. (2008) J Bacteriol.Jan;190(2):727-35
2] Callanan,M.J., Kaleta,P., O'Callaghan,J., O'Sullivan,O., Jordan,K., McAuliffe,O., Sangrador,A., Slattery,L., Ross,P. and Beresford,T. (2006) Direct Submission genBank.
2] Callanan,M.J., Kaleta,P., O'Callaghan,J., O'Sullivan,O., Jordan,K., McAuliffe,O., Sangrador,A., Slattery,L., Ross,P. and Beresford,T. (2006) Direct Submission genBank.